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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0194900 |
| Transcript ID | LotjaGi3g1v0194900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear matrix protein 1; TAIR: AT5G17620.1 nuclear matrix protein; Swiss-Prot: sp|Q0WTP1|AUG7_ARATH AUGMIN subunit 7; TrEMBL-Plants: tr|A0A0S3SWY5|A0A0S3SWY5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0194900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28321675..28329171) extracted from Lotus japonicus Gifu genome v1.2.
CAGTTATCTAATTTTGAAAATGCAGGTCCAGTATTTTTACATCTGCTGAGTAAAACGTTATTCAGTTAACGTGAGAGAGA GAGAGAGAAACTCGCCGGCGATAGGGTAGAGAGATTGAGCTCGCGACGGAGCTGCTTTTCACGGAGGCACTTCAACGGTC AAGCCTCAGCCAAACCCACTCTAAGTCGTGCAGAACCCTCATCCACCACCACCGTCATCGTCGGCTGAAGCTCGATCCCG CCACCGCGAGATGGCATCGAGGCAAATGGAAGAGATTCAGAAGAAACTGGGAATCCTAAATTACCCGAGAGCCAATGCAC CTGCTCAGTCCCTCCTTTTCGCCGGCATGGAACGCTATTCCCTTCTCGAATGGCTCTTCTTTCGGTATCCCCATTCTCAC TTTTCTCTCATCTATTCATTCTTATTCTTTTGGGTACTTGTAAATTGTAATTCATCAATTACAGGCTCTTAGGTGATAAA TCACCATTTTCTCAACAAAACTTACAAGGAGATGCCCTTGATCGTGATGACGAGACCCCTCGAATTCAGTGTATGAGTTC TAATTTTCCTTCTTTTTAAAGTTCCTAATTAGCTTTTGTTAGAAGTCCCACATTGGCTAGAGATGTGGCCAAACACGCGT TTATATAGGGTAGAGTAACCCTCAACTCTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCGAATTCTAATAGCTTTGTT TGTGACTAAGTAACTGTTTTAACTGTTTGTGACTAAGTATGTTTCTTATAGTATGATTCATACACATGGAATATTCTTTG TATGTGCTGCATCCGAACTGAATGCATTTGTACTCTGCTATTCCACATTTATTAACGCATTGCAATTTGTTCTTTTATTC TTTTGTTTTTCTTTAAACACTGATGAAAGACTCAATTTTGCCCCGCTCTTTAAGCATCCGAACTGAATGCATTTGAGTGA CTATTTACTTGCCAATTGCTCTCTGTCTACTTCACTTTTGTCATACATCATGCACCCTGTGTCTGTGTTTAGTGGCTTAT AATTTTGAAACAAGTTTGCCTCTCTTGCACCCTTTGATTGTCTCTTCTTGTAGTGACTTTGCTTCCTATGACTGATAAAT TTGCAGATTTGGCAGAGATTGCAAAGTTTTTGGGGATTACGACAACTGTAGATATAGAAGCCATTCAAGTGAGTCATTTT GATTTTCTCGTATTGCTATTTTACCAAATTCATAAACGTAGCTATAGGAAGCATAGATGACTAGCTGCTGGATACATGTT TTTATGGTTAAGTTTTAATTCCTATTGTTTTCTCTGTTTTTTTAAGCTTGAGTTGTTGAATTGTTCTAATTTTCCATAAT ATTTTCTTTTTCATTGTATTTCTTTCTTATATATATACAATTTGGCATGTGGTCTTGCTCTAACAGTAGTTAGCAATATA CTTATTGCTCTTATCTTTACAACTCTCTCAACTACATCCTTCTGTCTTCATATGAGCATACCTTCTGAATTGTTTTGTAG TTGTCCCTTTCTTTGTGGGCTTTGTTTAATGATTTTGATTTCCTGCAATATCTGATCTCAATGTGGGAAGGACTATTAGA ATATTTTAGCCTGACATTGTTGTTGGGGAAAAGTTGCTTATAAGTTTACTAATTTATTTCTGAATTATATGTACTGTTTT TAGTCATATCTGTGGAAAACTATTTTTAAAAGAGGCCTTTAAAGTGGTACTGGGTATGGCATCACTACGAACTAGAATGC TTGGAAGCAGTAACTACCTGCATTAAGTTTTAAGCGTATTTTAGCTATCTTCCTGGCCCCTTGTCTTGGTTTTCATAGAC AGATAGTTGTTATGATTTAAGGGCTTAATGCCAAAAGAGCCACAAGCAATCAGGTGAATTGGGAAAAACCAGTGCACAGA AGAAGATTGAGCTGGTTCTGTCTTATTTGTGTCTAACCAACATGTGCTATTTGTGATTTATAGCTAACCCGTTGAAAACT TTCCTTAAAAAACCTATCTAGTTATGGTTTAACAAGAAGAGAAAAATATTCTTTGCATTTCAAGAATGCGAGGAGGTTAT TGATAGCTTGCTTCTAGATTTGATATTTTCCCCTTGGATGCAGTGGTCACTCTGTTTATTAGAGAAAAATGAAAAATTAG TGTTTTATGTCCAAATTTGATGTGCCATGCATCATAGCAAGATTCATAATTTCGTACACATTTTGTCTAGAATTTACCTG GAAAGCTAGATAATACTAAGCAAATATGTGACAGGGACATGGAAGCTATGAAGACCGAACTGAAATGCTTCGTCTTATAG TAGATCTAGTGGAGGCAACCATTTATGCTGATAATCCGGAATGGAGGTTGTCTATATATATATATATATATTTCTTAGTG GTGCTATCTCTTTTTATATTAGTATGACTATGCACAGATGGAATTGACATAAATTTGTTTGTACTCTTATTTCTGTAGTG TTGACGAACAGGTAGTAAAGGACATCCAATTGATAGATTCAATTGCAGAAAAACAAGCTCAAATATTTTCTGAAGAATGT AAATTGTTTCCTGCAGATGTTCAGATTCAGTCCATATATCCATTGTAAATGTTTCTTGCTTCCTTTTCTTATAATTTTTT TTCCCATTCTTGAATTATTGAATTGAGAATAGTGAAATTATAGGGTTTTAGCCTTTTAGTTATAGACGGAGAAAAAGGAG AGAAAGAGACGTTGAAAGATCTTATTAAAAGCGACCTCAGGGTCAATAATATCGCACAAATTTGGTTTTGATCAAGCGCA ATGGGGTTGGGTGATCCATATAGCCGACCTCAGTTAGTGGGATAAGACTTTTGTTGTTTGTTTGTTTGTTTGTTTATTTG AGATTACTGTGTTTCCTTGTCTTAAGTATTACACAAACATATCTTACTAACACTTTGAATTTGACAGTTGAATATTATGC AATCAGTTTATATAAATGATTAAAAATTAGAAGTTCATTTGATGGAAATGGTTTATTTTTTACTTGGAAAAGAACTTTCT ATCACGAAAGATGTAGTAACATTCTGTTTCTTCAATCTAACTATTTTCAGGCCAGAGGTATCCGAGCTGGAGTCAAAGCT TTCTGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCTAAGGTTAACACACTTCTTGTCC TCTGATCTGATGGTGACATGTATCTGTAAGATCTGCTGGAAAATATTCAGCAGCTTGATATTATTTCTCCTATATATATA CATATATTTTTCAAGCCATATTGTTTCACCTAGTTAATATCCTGTATTTTCCTATATTTTGTTATTACCAAAATAAGCCT ATGATTGTTCTATTTTGTGTTTCTTGGTAAATGTTTAGAAATTTCAAGTTTCTGGTTAATTATTTTCCTCAATCATCTTT CTTAGCCTGTCTTGTTCTTGCTTTTTCAATGCCTTCCAAGGATTTACTAAATGGGGACATAAAACCAGATTTCTCATTGA CAAACATCATGTTTTGCCCCCCCCCCCCCTGTTTGCTGATTCTTTGCAATTTTAGCTTTTGGGCAGCTGTCAGCCATTTC TTATTGAAAGCTAAATTTTGCTAGTAATGTTGTGGCTTGGATTAATTTTTGCAGCAAGTCTTAGACTAATCTACCAAAAG CTTGGAAAAAATATCACTATTTGTTTGCTTCATTCAATTTTATTCATGTTAGAGTTCGCTTGGAAGAGTCTATCTTATAG AATAAATAAACACTCAGGTGGGTGTTTGGTTAAGCATATGAGAATAGTTTATTACCTGCTTATAAAATCTTGAGCTTATT TCTCATTTTAGTTTATGAATAAGTGCTTATAGATAGACTCTTTGAGCTTATTTCATTAAGCTTTTCAAATAATCTTATGG TTAAGCGCTTACGTGATTAGTACTTTTTGACATAAGCACTTAATTAAGTTGTTAACCCAAACACACCCATAGGGCCTATT TGGTTTGAGAAAAATAATGTTTTCACGATTCCGTATACAAAATTGTGTGTAATTTTTTTTTTTCCAGTTTTTTAAGCTCT TGTTCTCTTATGATCTAGTTTCTTCTTCTTTTTCCTTTAATGAAGAGATTATAACGTAAATATGCTTCTAATTATTTTTC TTGTTCTTATTTTTATCCTTTTTGTAGCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAGCTGCGGGC ACATTTGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTATACCAAGGTTTGACCAGGATTTTCCCTATTGT GTTTTGAAAATCCTATTACCCGATTTGTTCAAACCTACTCAAATTAGGAGTTAGTATATTATAAGTGTAAGAAAAAAATA TGGGGATAAATTAGACTATCATTGCAATTTGTGAAGTTTTGGTTGCAGTTAGTTAGAGACATTATATACTTCTAACTATC TCATAATTTGAGTACCTAGACCAGAATAGTTGGTTCATATGGAATTATGGATCAATGGATTTGGCCACTGTATTGCCAGG GGTGAAACTTGTAATTGTAATTGGCCCTTCTTAAAAAACCGGATACCTCTGCTTGTAATCGGTACATGATAAACCTGGTC TCATCATTGAGTAAGGCTTGGCTGATTTTAGTGTGTGACTGGGTAGCTATGAAAGGCATCAAGGCCCTTTAATAAATTAG AGAGGGTCATAGAAGTAGAATGTTTATCCACTGATTATAACAAACTAATTTGTCTTAAACTTAGCCGATTGTGATGTATT TTATTGACTATTAAATGTTGATAGTAAATGTATGCTTACCAATGATTGTACTATTGTGTTTTTCTTTATTTATAAACTTT GTTTAATTTTTTTTGGTTTTGATAAAAGGCTATAATCATCATTTTGTTAATATTCTGTACTTAATCTAATGGTATTATTA TACTAATTTTTACGGTGCTGATACTCATTCCTATGCACCAGCACAAGCAATAGGATTGGAAGATGGACCAACTTGGGAGC TTGCTCGCAACTTGGTTTATTAACATCTTAATTTGCTGTGTGTGAGGTTATGAGCTTTCATATGTCGACTCATTAGCTGG TGAGCTGGTTCAATATATGAACAAATGAACATTTTTAAATGAATATATGTAAAAATTATAGAATATCTAAATTATACCAA GCTCAGTATTAGCTCTTAAGTTTGAGAAGCTCAGGAGCTTAAGGTGACCCATGTTTGAGCCAAGAGGCTTGACAATTCCT TCCTCCATTATTAACAGTATACCCAAAATCGTTTAGTGGGAGTCGACCATAAATTGTTCTGAGGAAGCTAGGACACACCT ATGTAGCAGCAGACTATTTTTGAATGATATGATGAGGCTATCGTGGTGTTTCATGTACACTTGTATTCCTTGGAATTAAT GATCTATCATTTCCATGGATAAATATTGAAGGAGTCCTTAAACAGTCACCCGAAAGTTAATAACATGACATTTAAGTAGT TTTTAATCTTAACCATCCATGGGAGATTGAATGATCAGTGTTTGCTTTTAATAACAATGCTCTCACTTTACATGTAACTT GCAATAGCTGACTTTTGTATAGGAAATTCGTCCATGGACGCATATGATGGAGGTTCCACAGCTTCATGGATTCGGACCAG CTGCCAATCGTTTATTGGAGGCATACAAAATGCTTTTGAAGGTAACCTACCTATGATGGCATATATATTTTCCTTAAACC TATGACACTGACTGAATTATTAGAAACTTAAAATCAAGGATTGATGCTAGGTTTCTAAATTCATCTATTAATGGTTAGTT ACAAAAGTATTTAAACAAATATGGAATACCTTTTATTGCTTAAGCTAATCATTCTTGTCATGAACCAACTATTCCAAAAG CTTAAACCACTTTGTCGTAGAGGTTCTGAACTTACCATATTATGAAGAAGCTATCCTAAACTTTTTGGTGAAGACACAAA TTATTTAATACTATATTTCTAACAATTCTGATACATGATTTCATTTGTGTGTATATTAGATTATTAGATTAGTTTATGTA TGAGTGAAATTCTTACTGTTTGTTTTTCTTCAATCCTTCAGTTTTCCTTCTCATGTTGAACTTGCTCATTTGCATTAGTT CATTATTCTCATCCTCCCTCCCTCCTTCAATGGTGTCTGGTCTTAACCTTTTACCCCTATTTCCTTATGGACTTCACATT TATTTTGTTTGAGACTAAACTAAACATCATGTCAGAATTTCAAATCTCTGTGTGGAAGGGATAAAAAGGTGGCAAACAGA GTATATGATTATCCCATCTTGCTGTTTAAGATGATTAAAAGTTATTATGATTCATATAACAAATATAATCGATTCCTCGT TGCAGTTTAATGGCTTGATATGTTTGCACCAAATTGTTAAGGGTTCTAGACTTTGTACTGAACAAGACCTGTGAAGCTTG CAATTTTATTGGTGCTTGAGCGCCTCTATTGGGGGCTCTGCTATTTTATTACACACTATACAGCTACCTGACTAAAAATT ATCAATGGGTTGAGATTCTACTTCCTTAATCAGTTCATCCAAGGTTTGGGATATCAATATTAAATGCTAAATTGTTAACT TGGGCTCTTTATTCATTTTTCTACAATTACTCTGGTAAAATCTGATGAAACTAGTCAAAGATGATTCACTGTAAATTATT GAAGTGCATGATTTAATTTAATTCACCCCATTGTAAACGTATTCTAAACTGGAAGTTTACATGATGAATGCATTTGTGCT CAAATAATGCCTTATTAATATAGTTGAGTAAAAGTACTGCATGTTGGTCTCCATAATAAATTGCTCAATTTCTTATCATT GATTGCATTTATAAAATCCTTTTTATTTGTATCTGTTTGTTTTCAACAGTTTTTGGGTAACCTGCGGAATCTTAGAGACT CTCATGCAGCTCTTGCTTTTGGATCTTCCGAGACTTCTGAAGGGCCTTCTTCTGTCACAAGAATAATCTCTGAATGTGAA TCTTCATTGACTGATTTAAACCACGATCTAGGAATTCTCGCTGCTTCCATTGCTCGTGAGCAGGGAGAGAAGAGCATTTG ACGAAAGAGTATGAGAAGTAAAAGATTAATTCTTGAAGTCTTCTTCTGGACTTTGTGATCTTTTTGTGCATAGTATTCAT ATTTCTGACACGAGATGTGATAATGTGTGACATTGTATTATCCAGGCTTAAATTTATATATTGCAGTTTCTTTTGTTGAA AAACACCAGCTGAGGTTGGCTGTAAATTTGGAATATTTTGATCTACAAGAGGTTAAAATTGGTTTGGGGATGTTTGTACT GTATAAATTATACACTTCTGAAAATTACAGGAACACTTAACTACTAGAACTAAGTTGTTAACTTCAACTGAATGGTGCGA GAGACATAAAGATGAATCTGCCTGAATTACATTACAGGATGAATTATATATAATACA
CDS sequence (LotjaGi3g1v0194900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGAGGCAAATGGAAGAGATTCAGAAGAAACTGGGAATCCTAAATTACCCGAGAGCCAATGCACCTGCTCAGTC CCTCCTTTTCGCCGGCATGGAACGCTATTCCCTTCTCGAATGGCTCTTCTTTCGGCTCTTAGGTGATAAATCACCATTTT CTCAACAAAACTTACAAGGAGATGCCCTTGATCGTGATGACGAGACCCCTCGAATTCAGTATTTGGCAGAGATTGCAAAG TTTTTGGGGATTACGACAACTGTAGATATAGAAGCCATTCAAGGACATGGAAGCTATGAAGACCGAACTGAAATGCTTCG TCTTATAGTAGATCTAGTGGAGGCAACCATTTATGCTGATAATCCGGAATGGAGTGTTGACGAACAGGTAGTAAAGGACA TCCAATTGATAGATTCAATTGCAGAAAAACAAGCTCAAATATTTTCTGAAGAATGTAAATTGTTTCCTGCAGATGTTCAG ATTCAGTCCATATATCCATTGCCAGAGGTATCCGAGCTGGAGTCAAAGCTTTCTGAACAATCAAAAATATTGTTGAATCT TCAACAAAAAGTTGATGACTTGGCATCTAAGCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAGCTGC GGGCACATTTGGAATCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTATACCAAGGAAATTCGTCCATGGACGCAT ATGATGGAGGTTCCACAGCTTCATGGATTCGGACCAGCTGCCAATCGTTTATTGGAGGCATACAAAATGCTTTTGAAGTT TTTGGGTAACCTGCGGAATCTTAGAGACTCTCATGCAGCTCTTGCTTTTGGATCTTCCGAGACTTCTGAAGGGCCTTCTT CTGTCACAAGAATAATCTCTGAATGTGAATCTTCATTGACTGATTTAAACCACGATCTAGGAATTCTCGCTGCTTCCATT GCTCGTGAGCAGGGAGAGAAGAGCATTTGA
Protein sequence (LotjaGi3g1v0194900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRQMEEIQKKLGILNYPRANAPAQSLLFAGMERYSLLEWLFFRLLGDKSPFSQQNLQGDALDRDDETPRIQYLAEIAK FLGITTTVDIEAIQGHGSYEDRTEMLRLIVDLVEATIYADNPEWSVDEQVVKDIQLIDSIAEKQAQIFSEECKLFPADVQ IQSIYPLPEVSELESKLSEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNLIYTKEIRPWTH MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAFGSSETSEGPSSVTRIISECESSLTDLNHDLGILAASI AREQGEKSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 329 | 329 | 1.6E-203 | ||
| PANTHER | 2 | 323 | 322 | 2.7E-122 | ||
| Pfam | 6 | 323 | 318 | 5.9E-191 | ||
| Coils | 170 | 190 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Microtubule minus-end binding | Interacting selectively and non-covalently with the minus end of a microtubule. |
Expression pattern of LotjaGi3g1v0194900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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