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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0194900 |
| Transcript ID | LotjaGi3g1v0194900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear matrix protein 1; TAIR: AT5G17620.1 nuclear matrix protein; Swiss-Prot: sp|Q0WTP1|AUG7_ARATH AUGMIN subunit 7; TrEMBL-Plants: tr|A0A0S3SWY5|A0A0S3SWY5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0194900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:28321925..28328795) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCGAGGCAAATGGAAGAGATTCAGAAGAAACTGGGAATCCTAAATTACCCGAGAGCCAATGCACCTGCTCAGTC CCTCCTTTTCGCCGGCATGGAACGCTATTCCCTTCTCGAATGGCTCTTCTTTCGGTATCCCCATTCTCACTTTTCTCTCA TCTATTCATTCTTATTCTTTTGGGTACTTGTAAATTGTAATTCATCAATTACAGGCTCTTAGGTGATAAATCACCATTTT CTCAACAAAACTTACAAGGAGATGCCCTTGATCGTGATGACGAGACCCCTCGAATTCAGTGTATGAGTTCTAATTTTCCT TCTTTTTAAAGTTCCTAATTAGCTTTTGTTAGAAGTCCCACATTGGCTAGAGATGTGGCCAAACACGCGTTTATATAGGG TAGAGTAACCCTCAACTCTTGAGCTAGCTTTTGGGTTGAGTTAGGCCTCCCGAATTCTAATAGCTTTGTTTGTGACTAAG TAACTGTTTTAACTGTTTGTGACTAAGTATGTTTCTTATAGTATGATTCATACACATGGAATATTCTTTGTATGTGCTGC ATCCGAACTGAATGCATTTGTACTCTGCTATTCCACATTTATTAACGCATTGCAATTTGTTCTTTTATTCTTTTGTTTTT CTTTAAACACTGATGAAAGACTCAATTTTGCCCCGCTCTTTAAGCATCCGAACTGAATGCATTTGAGTGACTATTTACTT GCCAATTGCTCTCTGTCTACTTCACTTTTGTCATACATCATGCACCCTGTGTCTGTGTTTAGTGGCTTATAATTTTGAAA CAAGTTTGCCTCTCTTGCACCCTTTGATTGTCTCTTCTTGTAGTGACTTTGCTTCCTATGACTGATAAATTTGCAGATTT GGCAGAGATTGCAAAGTTTTTGGGGATTACGACAACTGTAGATATAGAAGCCATTCAAGTGAGTCATTTTGATTTTCTCG TATTGCTATTTTACCAAATTCATAAACGTAGCTATAGGAAGCATAGATGACTAGCTGCTGGATACATGTTTTTATGGTTA AGTTTTAATTCCTATTGTTTTCTCTGTTTTTTTAAGCTTGAGTTGTTGAATTGTTCTAATTTTCCATAATATTTTCTTTT TCATTGTATTTCTTTCTTATATATATACAATTTGGCATGTGGTCTTGCTCTAACAGTAGTTAGCAATATACTTATTGCTC TTATCTTTACAACTCTCTCAACTACATCCTTCTGTCTTCATATGAGCATACCTTCTGAATTGTTTTGTAGTTGTCCCTTT CTTTGTGGGCTTTGTTTAATGATTTTGATTTCCTGCAATATCTGATCTCAATGTGGGAAGGACTATTAGAATATTTTAGC CTGACATTGTTGTTGGGGAAAAGTTGCTTATAAGTTTACTAATTTATTTCTGAATTATATGTACTGTTTTTAGTCATATC TGTGGAAAACTATTTTTAAAAGAGGCCTTTAAAGTGGTACTGGGTATGGCATCACTACGAACTAGAATGCTTGGAAGCAG TAACTACCTGCATTAAGTTTTAAGCGTATTTTAGCTATCTTCCTGGCCCCTTGTCTTGGTTTTCATAGACAGATAGTTGT TATGATTTAAGGGCTTAATGCCAAAAGAGCCACAAGCAATCAGGTGAATTGGGAAAAACCAGTGCACAGAAGAAGATTGA GCTGGTTCTGTCTTATTTGTGTCTAACCAACATGTGCTATTTGTGATTTATAGCTAACCCGTTGAAAACTTTCCTTAAAA AACCTATCTAGTTATGGTTTAACAAGAAGAGAAAAATATTCTTTGCATTTCAAGAATGCGAGGAGGTTATTGATAGCTTG CTTCTAGATTTGATATTTTCCCCTTGGATGCAGTGGTCACTCTGTTTATTAGAGAAAAATGAAAAATTAGTGTTTTATGT CCAAATTTGATGTGCCATGCATCATAGCAAGATTCATAATTTCGTACACATTTTGTCTAGAATTTACCTGGAAAGCTAGA TAATACTAAGCAAATATGTGACAGGGACATGGAAGCTATGAAGACCGAACTGAAATGCTTCGTCTTATAGTAGATCTAGT GGAGGCAACCATTTATGCTGATAATCCGGAATGGAGGTTGTCTATATATATATATATATATTTCTTAGTGGTGCTATCTC TTTTTATATTAGTATGACTATGCACAGATGGAATTGACATAAATTTGTTTGTACTCTTATTTCTGTAGTGTTGACGAACA GGTAGTAAAGGACATCCAATTGATAGATTCAATTGCAGAAAAACAAGCTCAAATATTTTCTGAAGAATGTAAATTGTTTC CTGCAGATGTTCAGATTCAGTCCATATATCCATTGTAAATGTTTCTTGCTTCCTTTTCTTATAATTTTTTTTCCCATTCT TGAATTATTGAATTGAGAATAGTGAAATTATAGGGTTTTAGCCTTTTAGTTATAGACGGAGAAAAAGGAGAGAAAGAGAC GTTGAAAGATCTTATTAAAAGCGACCTCAGGGTCAATAATATCGCACAAATTTGGTTTTGATCAAGCGCAATGGGGTTGG GTGATCCATATAGCCGACCTCAGTTAGTGGGATAAGACTTTTGTTGTTTGTTTGTTTGTTTGTTTATTTGAGATTACTGT GTTTCCTTGTCTTAAGTATTACACAAACATATCTTACTAACACTTTGAATTTGACAGTTGAATATTATGCAATCAGTTTA TATAAATGATTAAAAATTAGAAGTTCATTTGATGGAAATGGTTTATTTTTTACTTGGAAAAGAACTTTCTATCACGAAAG ATGTAGTAACATTCTGTTTCTTCAATCTAACTATTTTCAGGCCAGAGGTATCCGAGCTGGAGTCAAAGCTTTCTGAACAA TCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCATCTAAGGTTAACACACTTCTTGTCCTCTGATCTGA TGGTGACATGTATCTGTAAGATCTGCTGGAAAATATTCAGCAGCTTGATATTATTTCTCCTATATATATACATATATTTT TCAAGCCATATTGTTTCACCTAGTTAATATCCTGTATTTTCCTATATTTTGTTATTACCAAAATAAGCCTATGATTGTTC TATTTTGTGTTTCTTGGTAAATGTTTAGAAATTTCAAGTTTCTGGTTAATTATTTTCCTCAATCATCTTTCTTAGCCTGT CTTGTTCTTGCTTTTTCAATGCCTTCCAAGGATTTACTAAATGGGGACATAAAACCAGATTTCTCATTGACAAACATCAT GTTTTGCCCCCCCCCCCCCTGTTTGCTGATTCTTTGCAATTTTAGCTTTTGGGCAGCTGTCAGCCATTTCTTATTGAAAG CTAAATTTTGCTAGTAATGTTGTGGCTTGGATTAATTTTTGCAGCAAGTCTTAGACTAATCTACCAAAAGCTTGGAAAAA ATATCACTATTTGTTTGCTTCATTCAATTTTATTCATGTTAGAGTTCGCTTGGAAGAGTCTATCTTATAGAATAAATAAA CACTCAGGTGGGTGTTTGGTTAAGCATATGAGAATAGTTTATTACCTGCTTATAAAATCTTGAGCTTATTTCTCATTTTA GTTTATGAATAAGTGCTTATAGATAGACTCTTTGAGCTTATTTCATTAAGCTTTTCAAATAATCTTATGGTTAAGCGCTT ACGTGATTAGTACTTTTTGACATAAGCACTTAATTAAGTTGTTAACCCAAACACACCCATAGGGCCTATTTGGTTTGAGA AAAATAATGTTTTCACGATTCCGTATACAAAATTGTGTGTAATTTTTTTTTTTCCAGTTTTTTAAGCTCTTGTTCTCTTA TGATCTAGTTTCTTCTTCTTTTTCCTTTAATGAAGAGATTATAACGTAAATATGCTTCTAATTATTTTTCTTGTTCTTAT TTTTATCCTTTTTGTAGCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAGCTGCGGGCACATTTGGAA TCTTTCCTAGAAACAGCTAGAACATTCAATTTGATTTATACCAAGGTTTGACCAGGATTTTCCCTATTGTGTTTTGAAAA TCCTATTACCCGATTTGTTCAAACCTACTCAAATTAGGAGTTAGTATATTATAAGTGTAAGAAAAAAATATGGGGATAAA TTAGACTATCATTGCAATTTGTGAAGTTTTGGTTGCAGTTAGTTAGAGACATTATATACTTCTAACTATCTCATAATTTG AGTACCTAGACCAGAATAGTTGGTTCATATGGAATTATGGATCAATGGATTTGGCCACTGTATTGCCAGGGGTGAAACTT GTAATTGTAATTGGCCCTTCTTAAAAAACCGGATACCTCTGCTTGTAATCGGTACATGATAAACCTGGTCTCATCATTGA GTAAGGCTTGGCTGATTTTAGTGTGTGACTGGGTAGCTATGAAAGGCATCAAGGCCCTTTAATAAATTAGAGAGGGTCAT AGAAGTAGAATGTTTATCCACTGATTATAACAAACTAATTTGTCTTAAACTTAGCCGATTGTGATGTATTTTATTGACTA TTAAATGTTGATAGTAAATGTATGCTTACCAATGATTGTACTATTGTGTTTTTCTTTATTTATAAACTTTGTTTAATTTT TTTTGGTTTTGATAAAAGGCTATAATCATCATTTTGTTAATATTCTGTACTTAATCTAATGGTATTATTATACTAATTTT TACGGTGCTGATACTCATTCCTATGCACCAGCACAAGCAATAGGATTGGAAGATGGACCAACTTGGGAGCTTGCTCGCAA CTTGGTTTATTAACATCTTAATTTGCTGTGTGTGAGGTTATGAGCTTTCATATGTCGACTCATTAGCTGGTGAGCTGGTT CAATATATGAACAAATGAACATTTTTAAATGAATATATGTAAAAATTATAGAATATCTAAATTATACCAAGCTCAGTATT AGCTCTTAAGTTTGAGAAGCTCAGGAGCTTAAGGTGACCCATGTTTGAGCCAAGAGGCTTGACAATTCCTTCCTCCATTA TTAACAGTATACCCAAAATCGTTTAGTGGGAGTCGACCATAAATTGTTCTGAGGAAGCTAGGACACACCTATGTAGCAGC AGACTATTTTTGAATGATATGATGAGGCTATCGTGGTGTTTCATGTACACTTGTATTCCTTGGAATTAATGATCTATCAT TTCCATGGATAAATATTGAAGGAGTCCTTAAACAGTCACCCGAAAGTTAATAACATGACATTTAAGTAGTTTTTAATCTT AACCATCCATGGGAGATTGAATGATCAGTGTTTGCTTTTAATAACAATGCTCTCACTTTACATGTAACTTGCAATAGCTG ACTTTTGTATAGGAAATTCGTCCATGGACGCATATGATGGAGGTTCCACAGCTTCATGGATTCGGACCAGCTGCCAATCG TTTATTGGAGGCATACAAAATGCTTTTGAAGGTAACCTACCTATGATGGCATATATATTTTCCTTAAACCTATGACACTG ACTGAATTATTAGAAACTTAAAATCAAGGATTGATGCTAGGTTTCTAAATTCATCTATTAATGGTTAGTTACAAAAGTAT TTAAACAAATATGGAATACCTTTTATTGCTTAAGCTAATCATTCTTGTCATGAACCAACTATTCCAAAAGCTTAAACCAC TTTGTCGTAGAGGTTCTGAACTTACCATATTATGAAGAAGCTATCCTAAACTTTTTGGTGAAGACACAAATTATTTAATA CTATATTTCTAACAATTCTGATACATGATTTCATTTGTGTGTATATTAGATTATTAGATTAGTTTATGTATGAGTGAAAT TCTTACTGTTTGTTTTTCTTCAATCCTTCAGTTTTCCTTCTCATGTTGAACTTGCTCATTTGCATTAGTTCATTATTCTC ATCCTCCCTCCCTCCTTCAATGGTGTCTGGTCTTAACCTTTTACCCCTATTTCCTTATGGACTTCACATTTATTTTGTTT GAGACTAAACTAAACATCATGTCAGAATTTCAAATCTCTGTGTGGAAGGGATAAAAAGGTGGCAAACAGAGTATATGATT ATCCCATCTTGCTGTTTAAGATGATTAAAAGTTATTATGATTCATATAACAAATATAATCGATTCCTCGTTGCAGTTTAA TGGCTTGATATGTTTGCACCAAATTGTTAAGGGTTCTAGACTTTGTACTGAACAAGACCTGTGAAGCTTGCAATTTTATT GGTGCTTGAGCGCCTCTATTGGGGGCTCTGCTATTTTATTACACACTATACAGCTACCTGACTAAAAATTATCAATGGGT TGAGATTCTACTTCCTTAATCAGTTCATCCAAGGTTTGGGATATCAATATTAAATGCTAAATTGTTAACTTGGGCTCTTT ATTCATTTTTCTACAATTACTCTGGTAAAATCTGATGAAACTAGTCAAAGATGATTCACTGTAAATTATTGAAGTGCATG ATTTAATTTAATTCACCCCATTGTAAACGTATTCTAAACTGGAAGTTTACATGATGAATGCATTTGTGCTCAAATAATGC CTTATTAATATAGTTGAGTAAAAGTACTGCATGTTGGTCTCCATAATAAATTGCTCAATTTCTTATCATTGATTGCATTT ATAAAATCCTTTTTATTTGTATCTGTTTGTTTTCAACAGTTTTTGGGTAACCTGCGGAATCTTAGAGACTCTCATGCAGC TCTTGCTTTTGGATCTTCCGAGACTTCTGAAGGGCCTTCTTCTGTCACAAGAATAATCTCTGAATGTGAATCTTCATTGA CTGATTTAAACCACGATCTAGGAATTCTCGCTGCTTCCATTGCTCGTGAGCAGGGAGAGAAGAGCATTTGA
CDS sequence (LotjaGi3g1v0194900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCGAGGCAAATGGAAGAGATTCAGAAGAAACTGGGAATCCTAAATTACCCGAGAGCCAATGCACCTGCTCAGTC CCTCCTTTTCGCCGGCATGGAACGCTATTCCCTTCTCGAATGGCTCTTCTTTCGGCTCTTAGGTGATAAATCACCATTTT CTCAACAAAACTTACAAGGAGATGCCCTTGATCGTGATGACGAGACCCCTCGAATTCAGTATTTGGCAGAGATTGCAAAG TTTTTGGGGATTACGACAACTGTAGATATAGAAGCCATTCAAGTAGTAAAGGACATCCAATTGATAGATTCAATTGCAGA AAAACAAGCTCAAATATTTTCTGAAGAATGTAAATTGTTTCCTGCAGATGTTCAGATTCAGTCCATATATCCATTGCCAG AGGTATCCGAGCTGGAGTCAAAGCTTTCTGAACAATCAAAAATATTGTTGAATCTTCAACAAAAAGTTGATGACTTGGCA TCTAAGCATGCTTACAATCCTGATGAGGAGTATACTGAGGTGGAATCCCAGCTGCGGGCACATTTGGAATCTTTCCTAGA AACAGCTAGAACATTCAATTTGATTTATACCAAGGAAATTCGTCCATGGACGCATATGATGGAGGTTCCACAGCTTCATG GATTCGGACCAGCTGCCAATCGTTTATTGGAGGCATACAAAATGCTTTTGAAGTTTTTGGGTAACCTGCGGAATCTTAGA GACTCTCATGCAGCTCTTGCTTTTGGATCTTCCGAGACTTCTGAAGGGCCTTCTTCTGTCACAAGAATAATCTCTGAATG TGAATCTTCATTGACTGATTTAAACCACGATCTAGGAATTCTCGCTGCTTCCATTGCTCGTGAGCAGGGAGAGAAGAGCA TTTGA
Protein sequence (LotjaGi3g1v0194900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRQMEEIQKKLGILNYPRANAPAQSLLFAGMERYSLLEWLFFRLLGDKSPFSQQNLQGDALDRDDETPRIQYLAEIAK FLGITTTVDIEAIQVVKDIQLIDSIAEKQAQIFSEECKLFPADVQIQSIYPLPEVSELESKLSEQSKILLNLQQKVDDLA SKHAYNPDEEYTEVESQLRAHLESFLETARTFNLIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLR DSHAALAFGSSETSEGPSSVTRIISECESSLTDLNHDLGILAASIAREQGEKSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 94 | 93 | 1.1E-100 | ||
| Pfam | 6 | 94 | 89 | 1.2E-49 | ||
| Pfam | 94 | 288 | 195 | 2.6E-110 | ||
| PANTHER | 94 | 288 | 195 | 1.1E-100 | ||
| Coils | 135 | 155 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Microtubule minus-end binding | Interacting selectively and non-covalently with the minus end of a microtubule. |
Expression pattern of LotjaGi3g1v0194900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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