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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0200000 |
| Transcript ID | LotjaGi3g1v0200000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Macrophage migration inhibitory factor like; TAIR: AT5G01650.4 Tautomerase/MIF superfamily protein; Swiss-Prot: sp|P81748|MIFH_TRITR Macrophage migration inhibitory factor homolog; TrEMBL-Plants: tr|I3SAS6|I3SAS6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0200000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:29161389..29164598) extracted from Lotus japonicus Gifu genome v1.2.
AACAAAATAAAAACCGAAGGTGTCGTAATTCGCAAGGGTTTCATTCTATTTCCAAACCAGTGGTGAGTAGTAGCTGCTGC GAGTTGCTGAGACCGAAACGATGCCGTGCCTTAACCTCTCCACCAACGTCAACCTCGACGGCGTCGACACCTCTTCCATC CTCTCCGAAGCCACCTCCACCGTCGCCACCCTTATCGGAAAACCTGAGGCCGTACGCTCCCTCACACCTTCTCTCCTTGC AATTTCCATTTATGCTTATTATTCGTTATTTGTATCCGAAATAGTGAAATTGAATTAGGATCGTATGAGTTGTGGATAGT TTTCTCTGCTTGCAAAACAATTATTTTGAGGATTTTTTTGATACAAAGGATTTGTGACTGGTGAGTGTGCTGGTCTCATA TATATGGTTCCTATTTGTCTCTGTTTGACATTTTTGATGGATGGTTGAATGTACGGTTGAATGTAAACTAGTTAGGATTT CGATGATTTGCAGCTGAGCTGATAATATGCTACAATAGAGTTTTTTTTTGGGGGGGGGGGGGTGTTCAAGTTGGGTTTTT TTAGAGTTGGTGTTGTACATGAGTTTCTATGAGATACTCTTTTGGTTTTCCTTTATGGTCTTCTGCAATATAATGGTACG GCCGGAAGTCCCTATTTATTTTACTGGTCCAGTGCTGTATTTGCTGAATTGCTCATTTGAATCAGTGTAGTCTAAGGCTT CTAATGCCACATGTAACGCACTGCCCTTGCGCCCTAGGTTATGTTTGTCAGTTTTGAGGGGAGGGGAAGACTTTGAGAGG AAGGGAAGGAGAAGGTGAAGAGAGGGCAAGCCCTCCCCTTATTTGGAAGTTCATAATCCCACAAAACTTTCCAATTCGGG GGAACTCATAAAACAACTGGATTGAGGGGGCTAGAGGTATTTTCAGAAATACCCCCAACCCTATTCCCCCACTTTAGAAA AACTCCTAAACAAGGGGTGGGTTTCTCATAAGCCTCTGTCTTCCCTTTCCCTACCCTCCAAAACCCAACTTACTAACAAA GCATTAGTTTCTTTAATATTTGGTCTTTGTGATTAGGTTTTAATTTTATGATGAATTTTATTCTTGAGGGGCTATGTCTG AATGGTGCGGAATGGGATCATATAAGTTCCATTTTTTCTTTGGATTGTTTAAACTAAGTGTGATGGAAGTAAACATGATG GAATGCATTCCATCCCCATCGAATATCCTATTTTTTCTTCTCTGCCAATTTGAGCAGAATGGATGGATAAAGTCTTTTAT CCCATTCCATCACTTGAATATCCAAACAATGAAATGGTAGCTTTATTCCCTTCCTCTCCATTTTTACTTCATTCCATTAT ATCTTTTAACTATTCTTTCCCACTCTCCAATAGATATCCAAACGCAACCTTTATCCTTTAATTGATATGGAAAATTAAAT GATCAAATAATTTACTGTCTGTTCTTTTTCTACTGTTGATGCATTTCTTGAGTGAGCTGTGCTTTGGTGCCACTTGCTTT AAGATGATAATACTGCCTGGCACCTTTATTCTTTGGCCAACAGTTTTCTTGGGTGAATACGAAGAATGTTTCTTATAAAT GCTGGATCCATAGTATTATACATACATTGAATTGAATTGCTTTCTATGGTTGGTATTTAATTTTTCTCTTGTTCTATATC TGTATTTCTTTCTTTGCAAGAAAGTTTATTGCTTTGACTTGTTCAGAATGTCATATAAAGCCTTATTATTCTGATCTTTG TTTATCTGCAGTATGTGATGATTGTCCTGAAAGGATCAGTACCCGTGTCTTTTGGTGGAACTGAGCAACCAGCAGCTTAT GGAGAATTGGTGTCCATCGGTGGTCTTAACCCTGATGTGAATAAGAAACTTAGTGCTGCAATTGCTTCAATTCTTGAAAC CAAGTTGTCCGTGCCCAAGTCACGATTCTTCTTAAAATTCTATGACACTAAGGCAAGTGTATAAATTCTGAGTTGCCCTG AAAAGAAGGGTCATTGCCCTGCACTCTTTTTCTTATTGCATTTTTTCCCTTTTTGTTTAGGCCCATCAGAGTCAAGAATA TGCACAATGTTTGCATGCTTTGCATCAGCACTAGATCATGTAAATTAATCCTAACTGTTCAAGACTATTAGTGTTGCCCC TTTTAAGATGTAATTAATAGCTCTATCTATTTCCTTTTGATATCAACTCTCACTTTTCCAATGCCTAGTTTTATGCCTGA CAATAGTTGATTGTATTTTTTTTTGTTTGCTGATACTTCATAGTTATGGACTTATGGTGCTTTGTTTGTTATGCAGGGTT CTAACTTTGGATGGAATGGGTCCACATTCTGAATACCGTGTTACTTTAAGTGTGGTGCCTTGAATGGATCTATATTCTGA ATGTTGGATGGAGCCTTTCTTATGTTTCACCTCTGCATTTATGTCTATATTTGATGTAATAATAGTACTCTGGATTTCTG ATGCCCTAAGTGAGGACATCATGCAAATATAACTTGATTGCTTGTAAGGACATTTGGGGATTTTGTGTCTTTATGATGCT TATGGACAATCATCTTTTTTTTAATGATCAGATGAGGGGGTTTGGATATGGGGAGGGGAGGGGTGGTATTTAGACAAACA TTATCTGGCACCGCTTAAAATTGTCATTTGTATAATTTTATTGATGATGCATTATTATGATTGAATGCTTGATTGGAAAA ACTAATTGCACAGATGTCAAGGCATGCAAATCCAAATGCTTCGCGTTGTAGCCTAACCTTGGACCCAATTTTGAGGGTGA ACATGGTTTTGGATTGGGATGCCAAACATGCCACTAAACTTGATACCCAACTATTATACCATGAGAGTTCTATGATAGAT TAATTGTTGGCTTTTGTTCTTTGTGTAGACATTTGCTTAGAACTAAGTTGTAGAATGTAAATTTGGCTTAGGGTAGTTGG CTAGTTGCTGATTACAGAGTATCAAGATGTGGAGAATATTGGTTCTGTGCTTTTATGTATTTATCTATTTGTTATTCATT ATGCATGCCTTTGGGACAGTCCGTCGAATTTCTTGGTGGAATAAGTAGTAAAAAATGCGTACTGTTTAAGTGGATGAAGG GCTTCTGCCTCTTGATTTATGACTTGACTTCACCTATTATCCATCTCTTCACTTCAGACCTGAATAGGGAAACCAAAATT ATTAACGGAG
CDS sequence (LotjaGi3g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTGCCTTAACCTCTCCACCAACGTCAACCTCGACGGCGTCGACACCTCTTCCATCCTCTCCGAAGCCACCTCCAC CGTCGCCACCCTTATCGGAAAACCTGAGGCCTATGTGATGATTGTCCTGAAAGGATCAGTACCCGTGTCTTTTGGTGGAA CTGAGCAACCAGCAGCTTATGGAGAATTGGTGTCCATCGGTGGTCTTAACCCTGATGTGAATAAGAAACTTAGTGCTGCA ATTGCTTCAATTCTTGAAACCAAGTTGTCCGTGCCCAAGTCACGATTCTTCTTAAAATTCTATGACACTAAGGCAAGTGT ATAA
Protein sequence (LotjaGi3g1v0200000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPCLNLSTNVNLDGVDTSSILSEATSTVATLIGKPEAYVMIVLKGSVPVSFGGTEQPAAYGELVSIGGLNPDVNKKLSAA IASILETKLSVPKSRFFLKFYDTKASV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 106 | 106 | 5.6E-66 | – | |
| PANTHER | 1 | 106 | 106 | 5.6E-66 | ||
| SUPERFAMILY | 1 | 105 | 105 | 5.13E-29 | ||
| Pfam | 2 | 106 | 105 | 4.6E-18 | ||
| Gene3D | 2 | 102 | 101 | 3.0E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0200000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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