Transcript — View — Lotus Base

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LotjaGi3g1v0202900.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0202900
Transcript ID	LotjaGi3g1v0202900.1
Lotus japonicus genome version	Gifu v1.2
Description	LURP-one-like protein; TAIR: AT5G01750.2 LURP-one-like protein (DUF567); Swiss-Prot: sp\|Q9LZX1\|LOR15_ARATH Protein LURP-one-related 15; TrEMBL-Plants: tr\|I1JL15\|I1JL15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0202900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:29630678..29632149) extracted from Lotus japonicus Gifu genome v1.2.

AAGAAGATAAATAAACACAACACAAGAAATTGAAAAGTCTAGTACTAGCATCGATCTCTCTCTGAACTTAATTCACAGTA CTACAGTCATGCAACAAAACAGAAAGCCGGCAACGGCGAAACCCGCCGGTATCATCAGCCCTCAGTATTGTTCTCCGTAC AATGTTGACCTTGCAGTTGTGAGGAAAGTCACGGCACTAGCTGATAACTTCTCCGTCATCAATGTTAATGGCAAAGTAGT TTTCAACCTTCAGGCCTCTCTCATGTCCATCAATGATCACCGTGTCTTGCTAGACGCCGCCGGAAAACCTATCGTCACGC TGCGCCAGAAGGTTTGTTCTACTTACTATACTCAATTATGTATTTGGTATGTTTATATCTTAATTGTTATGTATCATTTA TTTTGGATTGGATTTTGATTAGTTTGTTAAATGGTTTGAAGAATTTTTTTTTTGTACATAGGAAAATATGGTTTGAAGAA TTTGAGATAATACAGTTAGTTTTCTGGAATTTTGTAAACAAAATAAAAGTTTTCTGAAATTCAAATAACTATTAAAATAC GTAATTGGTGTCGGTATCATGACTTAAATTTTCACGTTATTTTTTTAAAAAAAATATTTATAAATTTTTCACGTTTATGA ATTTTTTACTTATTTTGTTTATTGAATCAGTAATATTACTTTTGATTTTTGTTTTCTTTAGCATTGCTTAGGTAGATTAT CATCTTTAAATTAAAGGAAGAAAACTTATGGACTGAATCCAATTTAATTTGTTTTGTAGATAATGACAACACATGATCGA TGGCAAGCTTTTCGGGGTGAAAGCACACAGCCAGAAGATTTAATCTTTAGTGTAAAGAGACCATCCATGTTCCAAGTAAA GACCAAATTGGAGGTGTTCTTAGCTAACAATACCAGAGAACAAGTTTGTGACTTTAAGATCAAAGGAAGCTGGTTCGAGC GATCTTGTGTTGTTTATGCTGGTGAATCTCTTACCATTGTTGCCCAGGTAAGCCTTTCACAAAAATAGAATCTTGTTATA AAGAAAGTAACCTTAATTTTCCTTGTTTAAATTCTGATCTTTGCAATGTATTTATGTGATTGCAGATGCATAAGAAGAAC ACAGTTCAAAGTGTAGCCATTGGGAAAGATAGTTTCATGCTCACAGTGTATCCCAACAATGACTATGGATTCATAGTGGC ACTGATTCTAATTCTTGACGAAATCAACCAAGACAAGAGACGGCAAGCTCAGAATTGATTGATTACCTGAGCTTTTTGTC TATATATAATTTCCTCTGGGGGACGGTTCTCTGAGGTTTTTTTTTTCAAAACATAAATCTTGACATAGTGAATAGATTTC CTAGCCATCATCTTGTATATGTGTTAATTTAACTTTTAATATTGTATATTTTATTGTTTTGGAGTACATTATAATAAAGG TTTTTTTAAGGAAAAATGGAATTTCATTTAAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0202900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAACAAAACAGAAAGCCGGCAACGGCGAAACCCGCCGGTATCATCAGCCCTCAGTATTGTTCTCCGTACAATGTTGA CCTTGCAGTTGTGAGGAAAGTCACGGCACTAGCTGATAACTTCTCCGTCATCAATGTTAATGGCAAAGTAGTTTTCAACC TTCAGGCCTCTCTCATGTCCATCAATGATCACCGTGTCTTGCTAGACGCCGCCGGAAAACCTATCGTCACGCTGCGCCAG AAGATAATGACAACACATGATCGATGGCAAGCTTTTCGGGGTGAAAGCACACAGCCAGAAGATTTAATCTTTAGTGTAAA GAGACCATCCATGTTCCAAGTAAAGACCAAATTGGAGGTGTTCTTAGCTAACAATACCAGAGAACAAGTTTGTGACTTTA AGATCAAAGGAAGCTGGTTCGAGCGATCTTGTGTTGTTTATGCTGGTGAATCTCTTACCATTGTTGCCCAGATGCATAAG AAGAACACAGTTCAAAGTGTAGCCATTGGGAAAGATAGTTTCATGCTCACAGTGTATCCCAACAATGACTATGGATTCAT AGTGGCACTGATTCTAATTCTTGACGAAATCAACCAAGACAAGAGACGGCAAGCTCAGAATTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0202900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQQNRKPATAKPAGIISPQYCSPYNVDLAVVRKVTALADNFSVINVNGKVVFNLQASLMSINDHRVLLDAAGKPIVTLRQ KIMTTHDRWQAFRGESTQPEDLIFSVKRPSMFQVKTKLEVFLANNTREQVCDFKIKGSWFERSCVVYAGESLTIVAQMHK KNTVQSVAIGKDSFMLTVYPNNDYGFIVALILILDEINQDKRRQAQN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR31087:SF58 View details on PTHR31087:SF58 Search for proteins/transripts with this domain View external data on PTHR31087:SF58	10	203	194	1.7E-81	–
PANTHER	PTHR31087 View details on PTHR31087 Search for proteins/transripts with this domain View external data on PTHR31087	10	203	194	1.7E-81	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.20.90.20 View details on G3DSA:3.20.90.20 Search for proteins/transripts with this domain View external data on G3DSA:3.20.90.20	13	203	191	4.0E-76	IPR038595 Show description in modal box View details on IPR038595 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54518 View details on SSF54518 Search for proteins/transripts with this domain View external data on SSF54518	15	198	184	9.15E-54	IPR025659 Show description in modal box View details on IPR025659 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04525 View details on PF04525 Search for proteins/transripts with this domain View external data on PF04525	16	193	178	2.1E-53	IPR007612 Show description in modal box View details on IPR007612 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0202900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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