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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0211000 |
| Transcript ID | LotjaGi3g1v0211000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT5G01220.1 sulfoquinovosyldiacylglycerol 2; Swiss-Prot: sp|Q8S4F6|SQD2_ARATH Sulfoquinovosyl transferase SQD2; TrEMBL-Plants: tr|I1J786|I1J786_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0211000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31568346..31574574) extracted from Lotus japonicus Gifu genome v1.2.
AGCACGATGATATTAGTTTTTTTTTTGGCTTAATTGCACTTTTGGTCCCCCAACTATGGCCTTCCTGCGAAAATCGTCCC TAAACTTCAAAATTAGCAAAACTCGTCCCTCAACTATACACACAGTTGCACTTTTGGTCTTCCGTTAGCATTCCGTCAGA AAACTAACAGATTGGGACTAGTGACGGAGATAATCCGTCACAATTCACAATCCAGTCACCAAATTTCTTCATCTTCCTCA ATATAACCACCACTCATCCCCCCCTCCTCATTCCTCACTTTCTCCATCTTCATCAACCTCAATCCCTCATCCTCCCCTCC CTTCTCCTTTCATTCCTCTTCACCACTACCTCCCTCAACCATCAACACAAACTGGGTGGGGTTTGGGGTGGGTTCCGGTT GGGTTTCTGGGGAGGGGTGGGGTTGGTGGAGGGAGAGGTGGTTCTGGGTTGTGGTTTGCTGGTGTGGGTTCGGTGGAGGG AGAGGTGCGAGTGAGAAAGATGAGATGAAGATATGGAGGGAGAGGTCTGCAACTCCTTCTTTTGGGTTGTGAAATGGATT TCTAATTTCATGAGGAGATGAGAAAATGGGATCTGCAAAGAGTGTTGAAGAAAAACCCAAAACCCCTTTCTCTCTAGCAA TCCGCTCCAATTCAATTTCAGTATGGAGAGTTTGTGTTGATGGTTGAGGGAGGTAGTGGTGAAGAGGAATGAAAGGAGAA GGGAGGGGAGGATGAGGGATTGAGGTTGATGAAGATGGAGAAAGTGAGGAATGAGGAGGGGGAGGATGAGTGGTGGTTAT ATTGAGGAAGATGAAGAAATTTGGTGACTGGATTGTGAATTGTGACGGATTATCTCCGTCACTAGTCCCAATCTGTTAGA TTTCTGACGGAATGCTAACGGAAGACCAAAAGTGCAACTGTGTGTATAGTTGAGGGACGAGTTTTGCTAATTTTGAAGTT TAGGGACGATTTTCGCAGGAAGGCCATAGTTGGGGGACCAAAAGTGCAATTAAGCCTTTTTTTTTAAATGTTAGTTGTTA ATAAATTAGTCTCTTTCCAGGATTTTAACGTTGGACCCTTTAACCTTCATTCCACCCAACCCTTATGTTCTCTTCCTTAC TCTTACTACTTGAACTAATCCTGAGAAACAAAAACGTGATGATGATATTAAGTAGAGCTGGGATAAAGACCACAAACAGA GAAGATTTTGATCCGTCCAAAAGTTTCTCACAACCCACAAGTGAAACAAGGACAATAATTGTGCTTGTGTGGAAGAGAGA GTGACCCAATAGCATATGCTTAATGAGTTCCTTTTTGATTCCTTGATGTCCCGCAATCAAAAACAGAATATCCATTGGTA GCATGTGATTTAGATTCCTCTGTTTTCACGCTCTCTCTGTTCCTTTCTTTTCGTACAGCAACACACAACCTCACAACATT GTTTATTAATCTACCAATTCAAATGCTGTAACTTTATATTATACACCTCCACACACCACTGCAATCATCATGATCAACTC TACGTCTCTCTCTATAAATCCCTCTCTCTCTCCTCCTTTTCATTCACCTGCCACAACCACAACAACAACATCATCATCAT CAACAACCCCTTCTTCATCTGCTTCTTTCCCTTCACACCCTCCTCAGATTTCTGCTAGATTTCATCTGTTTGGAGCAAAA CCCATCACCCCTTTTTGCAGAAAAGGTCTGTTGTACCCTTTTCAAGGGTCAGAGAGTGTGAGAAGCAGAAAAAGTTTGGT TGTTGGAGCTGCTGCCAAAATGACCATAGATGATGATAGCTTGCTACATGCGAATGAGGATGAAGAGAATCCTCCAGAGT CTGTTTTGCTTGACCTTGAGAACTGTTCCAAGCCTCGCAGAATCGCTCTCTTCGTTGAGCCTTCTCCTTTTGCGTGAGTG CACAGATCAATGAAATATAGTAGAGTGTTTTGAAGACTGAAACCCTTTTTCTTTTCAAATTTTATATTTTTTTTCAAAGC TTAAACATGGGACAGCATTGAATTTCAATTTTGATTGCAGTTGACTTGCCTTGTTGGTTGTTCACTTGTTCTGATTCAGC GTTGACTTTATGTGTCTCATAATTTGGCTTTGAAGTTTGAAGTATACTATTTTATAGATCAGATGGTTTTGAATTTGTTA TTCATGTCTTTTTTTTTATTGCCCTTGATTTATAATGTAATTGAGGTAGCTTTTACTTCTTCTGTTTCATATCATGTATC TCAGCTATGTTCTGCTGTTTTTTACAGACTTAGACTAGTGAATATGTGGGGTGTTCTTGGAAACATTGATGAGAAATTAA GATCCCATGTTCTTTATTTTCTATCTGTGATTAAACTTGCCATTATTCAGCTCTGGAAGGAAAAAAATTGTGTCTTCATT TTAAACAGAATGACAATTTGGTTTGTATCTATTTTGCAGATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTCATTA AATACCTTCGAGAAATGGGAGATGAGGTAACATTTTTATACTTCTGTTTCTATTTATATGCATGTCTATTTTCCTACATA TTTGGTGCTTTTATATGGTATCAACTCCATCAATTCAGAAGCAAGATGGAACAGTGAGGTTCTTCATTACACAAATATTT GTTTACTCTTTAACATTGTGCTTTGTTTGTGTTTGTAATAGGTATTGGTTGTGACAACACATGAAGGAGTGCCCGCAGAA TTTTATGGAGCCAAATTAATTGGATCCCGCAGGTTGCTAGCTGTATTCTGTTTAATTTGTTCGCTCATTTTCTCTTCATC TTGGCTGTTTTCTAAAGGAATTGTTTGTGAACCTTACACTTGCCATCTTGGAACTTCATCTTCAGAATAAAAACACTTTT GAGATCATAAATCATAAGTTACTTCTGTTAAGACTTAAGAGTACTAAAACTCCTTTTAAGATTTTTAACTTTCTTAAAAG AACTTACTTAATTATCTTATTATTTTTTAAATATGTTTTGAAACACATTTTGTTAAGAATAGCACAAACAAAAGGGTACT TATGATATTCGGTTTTCATCATTTTATAAATTTTTACTTCTTCATATCAAATTAGATGTTAGAGTCAGTCCTAGTTGGAT GCTGATATGTTCCTTAAAGTTATAGTTGCTGCCTCTGTCATTGCTTCATACTAATGATTTTCATTTCAAAAAAAAAATTG AAAAATGCAGCTTCCCTTTACCCTGGTATCAGAATGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCAGTT GCCCAGTTTAAGCCTGACATAATACACGCATCATCGCCAGGCATAATGGTTGGTTTGCAATTCCTGTATCTCCTTCTTAG TGCATGCTTTAGAAATTTTTCTATAATTTATTTTAAAGTCAAAATCAATTTTATGAAGAACCTTCTTTCAGTAGCTTCTG GGGCTAGAATTGATTCTGATGAAAGAAATGTTAATCTAACCATACTATTAACTCCTGGATTGTATATCTAACACTGGCTA AATTTCAGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCATACTCATGTACCA GTGTAAGTACTATTGACTAAGATTCCAGAATTTTTAATGTATTTCACATTTGCAAAACTGTCATGTCTGGGCTTCTTGAG ATTAAGTATATATTTGGACTACTGTTGAAATCATCGCTGATTCACGTTTGACTCAACGTGTCAAAATATTGCTTCTCCAT TGAAACCATCACTGATTCACCTTTGAGTCAATCACGTGTCAAAATATTGCTTCTCTGCTGATACTTTACGATGTGTTTTT TCCTGTTTGCGTTCACTCAAACGCTAATGGGCACTGAATCAAGTATTGCTTAAGGTTGATCTCTTTTTTTTTTGGTTCAG ATACATCCCAAGATACACCTTTAGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAGTATGTATGCTCTATATAGCTGTC TTTGTCCAACTTGGAATGCTATTTTTTTTTTGGGAAAATAACATGAATTTGCTGTTTTATATAGAGTTTCTGCATAGAGC AGCTGACCTAACCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGGTAAACATAAAC TCCTCTTATCAAGTGCCCTTTCACCTTTGCTCAATTGATAACAGCAGATTAACATAAGCATTTCGATAAACACATTTTTT GTCATGTTAAACCTAAAGTCAAAGTAGTTTTTCCTCAATCCATAAAGAGAGTTATGTTCACTTTTTGTCTCGAAGTAAAT GCTAACGTCTTTTACACTGGTGTCAACGGTATCCAAACATACCTGTTTGTCAATCTAGCAATTTTTTGTCTGACTTGTTT TTTCCTGATGATGTCCAGCTAACAAGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAG TCTCCTGAAATGAGATCAAGATTGAGGTAAGGATACCGATGTTCTGTCATTTCATTGTCTGCAAGTTTCATAGGTCTTTT TATCTTATTCTTGATCTTGTGTCATGCAGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGT TGAGAAGAGTTTAGATTTTCTCAAAAGGTAGATAACATCTTGAAAATTTTCAAAACATGAACGTATTGCGTGCAAGATTT ACAGTCCATCTTGAAAATAAACTGCAAGAGTGTTGAGAAGTTCTTTGTTGAGAATATTGATGTATTATAGCTGAAAGATG GTTAAACTTTTTCGGGATATGGTTTCTAGCAATTCATTTTGAAGTACCTCTAACTTCCAGATACTACTTCAATGCTTCAT ACCATAGCATATAATAGTATATCTAGCATGTAAACTTGAAAGTCTGTAACCTGACATTTGAAACACATGATTTGGATTTG GCAGTCTCATGGATAGGCTTCCTGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGTGAGAATGACTTACTCCG CGGTCAGGATCCTCTCATGTGTAAATTTCACATGACAGTGCTGTGTTGAAACTGTGTCTATCTCTCTTTTAATAGCAACT AAATAGGTGGGATCCTCTGAATATTTTTAAAGAGAGATAGACTGAGTTTCACATGATATCATTATATGACATGAGAGGAT CCTAATCCACAGATTACCTTCTGCCACCTTTTATTAAAATTTATTAACTGACACAGGGAGGAGCTGGAGAAATTGTTTGA AGGCATGCCTGCAGTATTCACAGGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTCA TGCCTTCAGAGTCAGAGACACTTGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGCC GGTGGAATCCCGGACATCATCCCTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACTG CTTGAGCAAGTTAGTGCCTCTGCTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAAA AGTATGATTGGAGGGCCGCCACGAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGG GCTCAACTGTTGAGACCATTCCAGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAGAAGTGGTGAATGCA GCTTTCAATTGGTTTGGCTTCAAGGAAAGCCTTGTGTGTATGAGACAAATGTGTGGTTGGTTAAGTGTAATGGATTCATT TGCTGTATATAATGGAACAAAAATTATGGCAGCTTGTGCCATAGTTTGTGCCATTATGATTAAGTGAATTTAAAAGATGA ATGTGTAATGTAGACTGTCATGAATCATGACACATTGGGTCACCAATAATTGTAGTACCCATTCAGGTTTCAGAACACAA ATATGCAAAAGCACAACAGAAAACTAGATGATCAAAACTTGGCCCCTAGGAGGATCCAGGAAACAAATCAGATATTACAA GACAATATACAAATTTCTGTCCTAATGTAGTTAGTTTTCTTTTCTTGGGGTCCATAGCTGTCGGATAGGAAAATTGTACT TTTTTAAAGAGATTGTTCTTGATAGAAAATTAATTACACATTCACTGATAAAACATAGATTTCACAAAA
CDS sequence (LotjaGi3g1v0211000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAACTCTACGTCTCTCTCTATAAATCCCTCTCTCTCTCCTCCTTTTCATTCACCTGCCACAACCACAACAACAAC ATCATCATCATCAACAACCCCTTCTTCATCTGCTTCTTTCCCTTCACACCCTCCTCAGATTTCTGCTAGATTTCATCTGT TTGGAGCAAAACCCATCACCCCTTTTTGCAGAAAAGGTCTGTTGTACCCTTTTCAAGGGTCAGAGAGTGTGAGAAGCAGA AAAAGTTTGGTTGTTGGAGCTGCTGCCAAAATGACCATAGATGATGATAGCTTGCTACATGCGAATGAGGATGAAGAGAA TCCTCCAGAGTCTGTTTTGCTTGACCTTGAGAACTGTTCCAAGCCTCGCAGAATCGCTCTCTTCGTTGAGCCTTCTCCTT TTGCATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTCATTAAATACCTTCGAGAAATGGGAGATGAGGTATTGGTT GTGACAACACATGAAGGAGTGCCCGCAGAATTTTATGGAGCCAAATTAATTGGATCCCGCAGCTTCCCTTTACCCTGGTA TCAGAATGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCAGTTGCCCAGTTTAAGCCTGACATAATACACG CATCATCGCCAGGCATAATGGTTTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCAT ACTCATGTACCAGTATACATCCCAAGATACACCTTTAGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAAGTTTCTGCA TAGAGCAGCTGACCTAACCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGCTAACA AGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAATGAGATCAAGATTG AGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGTTTAGATTTTCTCAAAAG TCTCATGGATAGGCTTCCTGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGGAGGAGCTGGAGAAATTGTTTG AAGGCATGCCTGCAGTATTCACAGGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTC ATGCCTTCAGAGTCAGAGACACTTGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGC CGGTGGAATCCCGGACATCATCCCTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACT GCTTGAGCAAGTTAGTGCCTCTGCTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAA AAGTATGATTGGAGGGCCGCCACGAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAG GGCTCAACTGTTGAGACCATTCCAGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG
Protein sequence (LotjaGi3g1v0211000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINSTSLSINPSLSPPFHSPATTTTTTSSSSTTPSSSASFPSHPPQISARFHLFGAKPITPFCRKGLLYPFQGSESVRSR KSLVVGAAAKMTIDDDSLLHANEDEENPPESVLLDLENCSKPRRIALFVEPSPFAYVSGYKNRFQNFIKYLREMGDEVLV VTTHEGVPAEFYGAKLIGSRSFPLPWYQNVPLSLALSPRIISAVAQFKPDIIHASSPGIMVFGALIIAKLLSVPIVMSYH THVPVYIPRYTFSWLVQPMWLVIKFLHRAADLTLVPSAAIGRDLEAAKVTAANKIRLWNKGVDSESFHPRFKSPEMRSRL SNGEPEKPLIVHVGRIGVEKSLDFLKSLMDRLPEARIAFIGDGPYREELEKLFEGMPAVFTGMLGGEELSQAYASGDVFV MPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLVPLLQDKELRETMGEAARLEME KYDWRAATKKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRVFPSPEVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| MobiDBLite | 1 | 43 | 43 | - | – | |
| PANTHER | 31 | 527 | 497 | 5.3E-289 | – | |
| PANTHER | 31 | 527 | 497 | 5.3E-289 | – | |
| CDD | 124 | 494 | 371 | 4.12146E-142 | – | |
| SUPERFAMILY | 125 | 492 | 368 | 5.97E-77 | – | |
| Gene3D | 139 | 491 | 353 | 5.7E-63 | – | |
| Pfam | 142 | 305 | 164 | 4.2E-23 | ||
| Gene3D | 302 | 482 | 181 | 5.7E-63 | – | |
| Pfam | 325 | 477 | 153 | 3.1E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0211000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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