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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0211000 |
| Transcript ID | LotjaGi3g1v0211000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glycogen synthase; TAIR: AT5G01220.1 sulfoquinovosyldiacylglycerol 2; Swiss-Prot: sp|Q8S4F6|SQD2_ARATH Sulfoquinovosyl transferase SQD2; TrEMBL-Plants: tr|A0A151UBU9|A0A151UBU9_CAJCA Putative glycosyltransferase MJ1607; Found in the gene: LotjaGi3g1v0211000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:31569876..31574091) extracted from Lotus japonicus Gifu genome v1.2.
TCTATAAATCCCTCTCTCTCTCCTCCTTTTCATTCACCTGCCACAACCACAACAACAACATCATCATCATCAACAACCCC TTCTTCATCTGCTTCTTTCCCTTCACACCCTCCTCAGATTTCTGCTAGATTTCATCTGTTTGGAGCAAAACCCATCACCC CTTTTTGCAGAAAAGGTCTGTTGTACCCTTTTCAAGGGTCAGAGAGTGTGAGAAGCAGAAAAAGTTTGGTTGTTGGAGCT GCTGCCAAAATGACCATAGATGATGATAGCTTGCTACATGCGAATGAGGATGAAGAGAATCCTCCAGAGTCTGTTTTGCT TGACCTTGAGAACTGTTCCAAGCCTCGCAGAATCGCTCTCTTCGTTGAGCCTTCTCCTTTTGCGTGAGTGCACAGATCAA TGAAATATAGTAGAGTGTTTTGAAGACTGAAACCCTTTTTCTTTTCAAATTTTATATTTTTTTTCAAAGCTTAAACATGG GACAGCATTGAATTTCAATTTTGATTGCAGTTGACTTGCCTTGTTGGTTGTTCACTTGTTCTGATTCAGCGTTGACTTTA TGTGTCTCATAATTTGGCTTTGAAGTTTGAAGTATACTATTTTATAGATCAGATGGTTTTGAATTTGTTATTCATGTCTT TTTTTTTATTGCCCTTGATTTATAATGTAATTGAGGTAGCTTTTACTTCTTCTGTTTCATATCATGTATCTCAGCTATGT TCTGCTGTTTTTTACAGACTTAGACTAGTGAATATGTGGGGTGTTCTTGGAAACATTGATGAGAAATTAAGATCCCATGT TCTTTATTTTCTATCTGTGATTAAACTTGCCATTATTCAGCTCTGGAAGGAAAAAAATTGTGTCTTCATTTTAAACAGAA TGACAATTTGGTTTGTATCTATTTTGCAGATATGTCTCAGGATACAAAAATCGTTTTCAGAATTTCATTAAATACCTTCG AGAAATGGGAGATGAGGTAACATTTTTATACTTCTGTTTCTATTTATATGCATGTCTATTTTCCTACATATTTGGTGCTT TTATATGGTATCAACTCCATCAATTCAGAAGCAAGATGGAACAGTGAGGTTCTTCATTACACAAATATTTGTTTACTCTT TAACATTGTGCTTTGTTTGTGTTTGTAATAGGTATTGGTTGTGACAACACATGAAGGAGTGCCCGCAGAATTTTATGGAG CCAAATTAATTGGATCCCGCAGGTTGCTAGCTGTATTCTGTTTAATTTGTTCGCTCATTTTCTCTTCATCTTGGCTGTTT TCTAAAGGAATTGTTTGTGAACCTTACACTTGCCATCTTGGAACTTCATCTTCAGAATAAAAACACTTTTGAGATCATAA ATCATAAGTTACTTCTGTTAAGACTTAAGAGTACTAAAACTCCTTTTAAGATTTTTAACTTTCTTAAAAGAACTTACTTA ATTATCTTATTATTTTTTAAATATGTTTTGAAACACATTTTGTTAAGAATAGCACAAACAAAAGGGTACTTATGATATTC GGTTTTCATCATTTTATAAATTTTTACTTCTTCATATCAAATTAGATGTTAGAGTCAGTCCTAGTTGGATGCTGATATGT TCCTTAAAGTTATAGTTGCTGCCTCTGTCATTGCTTCATACTAATGATTTTCATTTCAAAAAAAAAATTGAAAAATGCAG CTTCCCTTTACCCTGGTATCAGAATGTACCCCTCTCTTTGGCACTTAGTCCAAGAATAATTTCAGCAGTTGCCCAGTTTA AGCCTGACATAATACACGCATCATCGCCAGGCATAATGGTTGGTTTGCAATTCCTGTATCTCCTTCTTAGTGCATGCTTT AGAAATTTTTCTATAATTTATTTTAAAGTCAAAATCAATTTTATGAAGAACCTTCTTTCAGTAGCTTCTGGGGCTAGAAT TGATTCTGATGAAAGAAATGTTAATCTAACCATACTATTAACTCCTGGATTGTATATCTAACACTGGCTAAATTTCAGGT TTTTGGTGCTCTTATCATTGCAAAGCTTCTGTCTGTTCCTATTGTGATGTCCTACCATACTCATGTACCAGTGTAAGTAC TATTGACTAAGATTCCAGAATTTTTAATGTATTTCACATTTGCAAAACTGTCATGTCTGGGCTTCTTGAGATTAAGTATA TATTTGGACTACTGTTGAAATCATCGCTGATTCACGTTTGACTCAACGTGTCAAAATATTGCTTCTCCATTGAAACCATC ACTGATTCACCTTTGAGTCAATCACGTGTCAAAATATTGCTTCTCTGCTGATACTTTACGATGTGTTTTTTCCTGTTTGC GTTCACTCAAACGCTAATGGGCACTGAATCAAGTATTGCTTAAGGTTGATCTCTTTTTTTTTTGGTTCAGATACATCCCA AGATACACCTTTAGCTGGCTGGTTCAACCCATGTGGTTGGTCATAAGTATGTATGCTCTATATAGCTGTCTTTGTCCAAC TTGGAATGCTATTTTTTTTTTGGGAAAATAACATGAATTTGCTGTTTTATATAGAGTTTCTGCATAGAGCAGCTGACCTA ACCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTACAGCGGGTAAACATAAACTCCTCTTATC AAGTGCCCTTTCACCTTTGCTCAATTGATAACAGCAGATTAACATAAGCATTTCGATAAACACATTTTTTGTCATGTTAA ACCTAAAGTCAAAGTAGTTTTTCCTCAATCCATAAAGAGAGTTATGTTCACTTTTTGTCTCGAAGTAAATGCTAACGTCT TTTACACTGGTGTCAACGGTATCCAAACATACCTGTTTGTCAATCTAGCAATTTTTTGTCTGACTTGTTTTTTCCTGATG ATGTCCAGCTAACAAGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAA TGAGATCAAGATTGAGGTAAGGATACCGATGTTCTGTCATTTCATTGTCTGCAAGTTTCATAGGTCTTTTTATCTTATTC TTGATCTTGTGTCATGCAGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGT TTAGATTTTCTCAAAAGGTAGATAACATCTTGAAAATTTTCAAAACATGAACGTATTGCGTGCAAGATTTACAGTCCATC TTGAAAATAAACTGCAAGAGTGTTGAGAAGTTCTTTGTTGAGAATATTGATGTATTATAGCTGAAAGATGGTTAAACTTT TTCGGGATATGGTTTCTAGCAATTCATTTTGAAGTACCTCTAACTTCCAGATACTACTTCAATGCTTCATACCATAGCAT ATAATAGTATATCTAGCATGTAAACTTGAAAGTCTGTAACCTGACATTTGAAACACATGATTTGGATTTGGCAGTCTCAT GGATAGGCTTCCTGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGTGAGAATGACTTACTCCGCGGTCAGGAT CCTCTCATGTGTAAATTTCACATGACAGTGCTGTGTTGAAACTGTGTCTATCTCTCTTTTAATAGCAACTAAATAGGTGG GATCCTCTGAATATTTTTAAAGAGAGATAGACTGAGTTTCACATGATATCATTATATGACATGAGAGGATCCTAATCCAC AGATTACCTTCTGCCACCTTTTATTAAAATTTATTAACTGACACAGGGAGGAGCTGGAGAAATTGTTTGAAGGCATGCCT GCAGTATTCACAGGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGAGATGTCTTTGTCATGCCTTCAGA GTCAGAGACACTTGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGTTGGAGCGCGCGCCGGTGGAATCC CGGACATCATCCCTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTGATCTTGAAGACTGCTTGAGCAAG TTAGTGCCTCTGCTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGTTTGGAGATGGAAAAGTATGATTG GAGGGCCGCCACGAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTGGCGCAAGAAAAGGGCTCAACTGT TGAGACCATTCCAGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG
CDS sequence (LotjaGi3g1v0211000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCTATATAGCTGTCTTTGTCCAACTTGGAATGCTATTTTTTTTTTGGGAAAATAACATGAATTTGCTGTTTTATAT AGAGTTTCTGCATAGAGCAGCTGACCTAACCCTGGTGCCATCAGCTGCCATTGGAAGGGATCTTGAAGCTGCTAAAGTTA CAGCGGCTAACAAGATTCGTCTTTGGAACAAGGGGGTTGATTCTGAAAGTTTCCATCCCCGATTCAAGTCTCCTGAAATG AGATCAAGATTGAGCAATGGTGAACCTGAGAAGCCATTGATAGTTCATGTTGGACGGATTGGAGTTGAGAAGAGTTTAGA TTTTCTCAAAAGTCTCATGGATAGGCTTCCTGAAGCAAGAATTGCTTTTATTGGAGATGGACCCTACAGGGAGGAGCTGG AGAAATTGTTTGAAGGCATGCCTGCAGTATTCACAGGAATGCTAGGAGGTGAAGAGCTATCTCAGGCATATGCTAGTGGA GATGTCTTTGTCATGCCTTCAGAGTCAGAGACACTTGGGCTAGTTGTCTTGGAAGCCATGTCTTCTGGAATTCCAGTGGT TGGAGCGCGCGCCGGTGGAATCCCGGACATCATCCCTGAAGACCAAGATGGCAAAATCGGCTATCTCTACACTCCAGGTG ATCTTGAAGACTGCTTGAGCAAGTTAGTGCCTCTGCTGCAAGACAAGGAGTTAAGAGAAACCATGGGAGAAGCTGCGCGT TTGGAGATGGAAAAGTATGATTGGAGGGCCGCCACGAAGAAGATTCGCAATGAAAATTACAATGCCGCCATTTGGTTCTG GCGCAAGAAAAGGGCTCAACTGTTGAGACCATTCCAGTGGCTAGCGAAACGCGTTTTCCCATCTCCAGAAGTCGTATAG
Protein sequence (LotjaGi3g1v0211000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLYIAVFVQLGMLFFFWENNMNLLFYIEFLHRAADLTLVPSAAIGRDLEAAKVTAANKIRLWNKGVDSESFHPRFKSPEM RSRLSNGEPEKPLIVHVGRIGVEKSLDFLKSLMDRLPEARIAFIGDGPYREELEKLFEGMPAVFTGMLGGEELSQAYASG DVFVMPSESETLGLVVLEAMSSGIPVVGARAGGIPDIIPEDQDGKIGYLYTPGDLEDCLSKLVPLLQDKELRETMGEAAR LEMEKYDWRAATKKIRNENYNAAIWFWRKKRAQLLRPFQWLAKRVFPSPEVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 21 | 256 | 236 | 1.18E-56 | – | |
| PANTHER | 22 | 291 | 270 | 8.4E-171 | – | |
| PANTHER | 22 | 291 | 270 | 8.4E-171 | – | |
| Gene3D | 24 | 66 | 43 | 1.8E-49 | – | |
| CDD | 26 | 258 | 233 | 2.05386E-91 | – | |
| Gene3D | 67 | 248 | 182 | 1.8E-49 | – | |
| Pfam | 89 | 241 | 153 | 8.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0211000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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