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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0213500 |
| Transcript ID | LotjaGi3g1v0213500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication factor-A carboxy-terminal domain protein; TAIR: AT2G05642.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q6YZ49|RFA1A_ORYSJ Replication protein A 70 kDa DNA-binding subunit A; TrEMBL-Plants: tr|G7LDT6|G7LDT6_MEDTR Replication factor-A carboxy-terminal domain protein; Found in the gene: LotjaGi3g1v0213500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32141842..32146088) extracted from Lotus japonicus Gifu genome v1.2.
CTTCTCTGCACCCTAGAATCATTGTTTTTTTCTGTGCTATCGGTGTCGAAATTGAGTTGTCATCTATGATCAAGGTTCTC CCATTCCTAAATTCTGCCACCTCCTGATGTAGTTGCATAAGGTGAAGGGCAAGGAGGACGCGTGGACATCCACCTGCTGT TTGAACTCTATATTTAGGGTTAGTCGTTCCATAGGTTGCTATGGACATTCACTTCTCTGATTCTAATTCATCGTTGGGGT TTTCAATTGAATCTCAATTCATTTGAATTCTTGAATAGCAATTTGATGTCAGCGGTAAGCCATGGTTTTGTACTTTTGCG TGTGAGGAGACTTTGTTGATTGTAATTGATGATTTATTGATTTCCTGTAGCCTGATTTTTGCTGGAGGAGAAAGGGCTTT CCTGTGTATCTCCATGTAGTTGGTGAACTCCCATTCCTCTTGACCCAAATCAGAGTTCTTCATTCAGTAGGTAACTCCAA ATCCTAATCTCTACAACCACTTTCTTTAATGCAATTGATTTGAAGTCAGATTTCAGTCAAGTTTATGTCTCATCTAATTG GAGGTCATATTTTTCCAGTACCTTATATTACAAAGTCATCAGTTTCTGATGTCAGACAAATCTTCCCGGAATAGATTTTT AAGATTTCTTATTTTGTACTCTGATTGACAGAGGAATGACATTTATTTTGGGGTAGATATCACAGATTAAAATACTATTC TTCCCAGGCTATATATATCTACCCCTTTGTATGCTATAACGTGAAAAGTTTAAGACAAGAGTTCAAAACTAGCACCTTAT TCTCAGTTTCAGTTGTTGTGTTAAGTATGAAGTCCAGTTTGCCTAAAACTTTGTTTCCTTTTTGTTATCTCAGGAAAAAA TATATTGCAGATCGTCCTACTCCTTCTGCTTGGTGTGATTTTGATAAAGTGGAACAAATTTCACTTGATGATCATCCTTG GAATATCAAGGTGCGTGTTCTTGCTTGCTGGAAAAATCCTGATGAGCTGTTGGAATCTGAATCATCATGCTTGGAAATGG TGCTTATTGGTGCTGAGGTAGGAATTGTAGACTAATCTAATAATATATGTTACTTATGCTCTATACTTCATTGTATCATT GTTTCATTATAATTAGTGACAATGTTTCTTTAGTTAAGTAGACTTCTTCAATGTGTTGTATTTCCTCTTTAAACATTCAT AGTGTGACTTTGCATTTGTTGTAGGGTGTCAAAATACAAGCTTCTATCTGTAAGAGACACCCAATAAGGAATCAGATTGC TGAAGGAGCTGTGTACAAGATATCAAATTTCAGGATCTTCCCTAATGATGGAGTGCTGCGTTTCACCGGGCATAGCTGCA GGCTTTTTTTTCATGGATGCACAAAGATGGTTCGAACCACTGAGGATGGTGTTATTCCTTTAAACTGCTGGTCCTTCTTT GATACACGCCATATTAAAATTATCAGGGATACCTTCACAGAAGTAATAGGTGAGTGTTATTGAAAACTTGATATTTTTAA TGTTATCTAAAATCTTATTCATGGTGTCACTACTGTAAATGATTGATGATATTATATGATAGCCAAATTGCTGTAGTAAT ATTGGTGCTAGCATTGGAATGTAATTTGTTGCAATTTTTTTAGAGAAGTATAATAATAATCTTCACAAATTTTGTATACC AAATGTTAGGAACTCATTTTATACCCACATTAAAACACTGGAATAAATCACCGCTTCGAGTCTGTTGTTGTTTTCCATAA CATTTCCATTCATCTATGTTTCATATTTCATTTAATGTAATGGCAAATTTGAATTAGATTTTGTTGGACTGGTCATTGCT GCATCAGAGGAGAAGGTTTACATCAGGAATTCAAAAATTACTAAGAGGATGGTGATTCAACTCCAGGACCTTAGGTATTT AATATTAGTACAATAATTTTTTTTGGGTTACTATTGTCATGCTTGTGTGAAGTGTTTAGTGGGCCTAATGTGATAATTAT AATATTCACAGGGGAAATATCCATTGTGTGCTTGAAGGAGAACATGTGGAAACATTTTTGGAGTATTTGTCTTCAAACTG GACAGAAAAACCTATGATGGTTATACAGTTTGTCAAAGTTTTCACCCACAGAGGTGATTAGCAGGAAATGGTTTTATGAA TGTCCTTATTTAATTTAAATTATATAATTTGATGTGTTTATTAAACAATTTGCAGGGAGACTATTCATTGATTGCATACC ACCTGCAACCAAAATGTACATTGAGCCTGTTATTGAGGAATCAGTTGTGCTAGCTGGAAGGTAGAATCATAACTATCCTC TACTAACTTCAATAAAGGGTATATAATTATGTCCATTTTTTAGTTATTATCTCTTTGGACTGACATTTAATTGATTTATC ATTAGGTTGGCAGAAGCTGGATTTCAAAATGGCCTTGTTGAGTTTATAAGTCGTGATATTGCGTATGCGAATCTTAATGC TGACGTGCTGAAGTTCTACCCAAGGAGAACAATTTCTGAGCTTTTAGTGGAGAAAGAGGTAAATCTTTATCTTGTTTAAT TACATATGTGTTAAATATAATAACTTGGATATTTAGTTATTTTTTTCAGTATTGATCTGTGATTATATCGTTATATTTGT CTAACATGATCCAAACCTAATTTATTCACAGCAAGGTGTATTTCTTGTTCATGCTGTTGTTGTTGCGGTCTTAAAGGGTG GTTATTGGTGTTATCCTTCTTGTAGATGCCACAATGAGTTGAATTTACGTAATGATGCGTTTGAATGTTCAAAGTGTTCT ATGATCTTTGAGAAGATGATTCATAGGTCAGTTCAACTGTCTTTATTATTTTCACCCACTGTTTTAATGTTCATGTTCAA AAGCCATTTTGTCATAGTCATAATTGTTAATTTATGTGATATTGCAACAATAGTCATTGACCACTTGGTTTCAATATTAA CAGGTACCGTGTTAAGATTGAAGTTTTTGATGCTTCCGATAGTGCTGTTTTTGTTCTCTTTGAGAGGGAAGTACAACAAT TGATTAGTGTGTCATGTGAAGATTTAGTCAGTAACATTAAGGTGTGACATGAAATACTATTTTTTATTGTCTATGTGTTT ATACTATGGTCTTATATTTATAATGTGAAAGTTATTGACTTCTGAAAACTTATGAATTGTAGGTGGATGATGATTCTAAT GTTGTCTATCCACAAGAATTTGAAGATCGCATACCTGGAAAAGAGCTTATTTTTAAAATACGTAATGATGGTGGAATTAC ATATAATGGAGCTGAATGTTACCATGTCCTTGCCATTACTGAGGATCCTGAAGCAATTTCCTTATTTCATGCATTACAAT CTAATGATTCAACTGCCAATGTGTGTTCCTGAAACATTTTTTTTTGCTGCTAATTTATTTTACCATATCTTCTTCTTGTA TATGGTTTTTTATATGCTTGCTTCTCATGGTGAACCTTAATTCATTGTTTATACATTTTAGGCACAATTTGGGACCAATA CCACTGGTGTTGAAAACAATGAAGAGCTGGAAGACAAGGAAGTTGGTGGTTTTTCCTATAATACACCATTTGAAGATGTG CCTGAAAGTAGCACTGGATCTTTACTTCCCAAACCATTGAAGAAGAAATTGGTGTTGGACTTTGATGATGAATCTGAGGA GGATGGTAATAATGTCCAAGTTGTGGAAGGTTTCCTGAATGAGAAGAATTCATCTAACTTGGTGCTTTCTGCTGACGAAG ACAACATTAGGGTGGAAGTGGATGAGGACAAAAGTATTGATGATGCAGATGATGACTTTGAATGTACTATGATGGAAATT GCTGAGGAAGATGAGTTAGATGATGAAGCTGAATTGGAGGATGATCTTGCATATGTTGACTGAGTTACTAATTCTGTTTT TCTATGTGTTTCATTAAGTTTATCTAACTATGGCACCAGCTTTAGGTTTAAGTATTTTGGATGTTATGTTGTACAATTAA GTCCTTTGTTTAGTTCAAGGGACATGTTTATGTTTCAAGTGCTTTAGGTATAAGTATTTTGGCTGTTGTGGTGCCCAATT AAGTCGTTTGTTTAGTCCAAGAGACATGTTTATGTTTCAAGTGTGTCATATTAGGTAGTTCTTCTAAGTTCTAAGTATGT GTTTTTCATTTTACTGCCATGTATGTGAGACTACATGTTTGTACGTATGTTATGTGTTGTTAATATAATGTTGGTGTTTT TTTTAAA
CDS sequence (LotjaGi3g1v0213500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTTATTGGTGCTGAGGGTGTCAAAATACAAGCTTCTATCTGTAAGAGACACCCAATAAGGAATCAGATTGCTGA AGGAGCTGTGTACAAGATATCAAATTTCAGGATCTTCCCTAATGATGGAGTGCTGCGTTTCACCGGGCATAGCTGCAGGC TTTTTTTTCATGGATGCACAAAGATGGTTCGAACCACTGAGGATGGTGTTATTCCTTTAAACTGCTGGTCCTTCTTTGAT ACACGCCATATTAAAATTATCAGGGATACCTTCACAGAAGTAATAGATTTTGTTGGACTGGTCATTGCTGCATCAGAGGA GAAGGTTTACATCAGGAATTCAAAAATTACTAAGAGGATGGTGATTCAACTCCAGGACCTTAGGGGAAATATCCATTGTG TGCTTGAAGGAGAACATGTGGAAACATTTTTGGAGTATTTGTCTTCAAACTGGACAGAAAAACCTATGATGGTTATACAG TTTGTCAAAGTTTTCACCCACAGAGGGAGACTATTCATTGATTGCATACCACCTGCAACCAAAATGTACATTGAGCCTGT TATTGAGGAATCAGTTGTGCTAGCTGGAAGGTTGGCAGAAGCTGGATTTCAAAATGGCCTTGTTGAGTTTATAAGTCGTG ATATTGCGTATGCGAATCTTAATGCTGACGTGCTGAAGTTCTACCCAAGGAGAACAATTTCTGAGCTTTTAGTGGAGAAA GAGCAAGGTGTATTTCTTGTTCATGCTGTTGTTGTTGCGGTCTTAAAGGGTGGTTATTGGTGTTATCCTTCTTGTAGATG CCACAATGAGTTGAATTTACGTAATGATGCGTTTGAATGTTCAAAGTGTTCTATGATCTTTGAGAAGATGATTCATAGGT ACCGTGTTAAGATTGAAGTTTTTGATGCTTCCGATAGTGCTGTTTTTGTTCTCTTTGAGAGGGAAGTACAACAATTGATT AGTGTGTCATGTGAAGATTTAGTCAGTAACATTAAGGTGGATGATGATTCTAATGTTGTCTATCCACAAGAATTTGAAGA TCGCATACCTGGAAAAGAGCTTATTTTTAAAATACGTAATGATGGTGGAATTACATATAATGGAGCTGAATGTTACCATG TCCTTGCCATTACTGAGGATCCTGAAGCAATTTCCTTATTTCATGCATTACAATCTAATGATTCAACTGCCAATGCACAA TTTGGGACCAATACCACTGGTGTTGAAAACAATGAAGAGCTGGAAGACAAGGAAGTTGGTGGTTTTTCCTATAATACACC ATTTGAAGATGTGCCTGAAAGTAGCACTGGATCTTTACTTCCCAAACCATTGAAGAAGAAATTGGTGTTGGACTTTGATG ATGAATCTGAGGAGGATGGTAATAATGTCCAAGTTGTGGAAGGTTTCCTGAATGAGAAGAATTCATCTAACTTGGTGCTT TCTGCTGACGAAGACAACATTAGGGTGGAAGTGGATGAGGACAAAAGTATTGATGATGCAGATGATGACTTTGAATGTAC TATGATGGAAATTGCTGAGGAAGATGAGTTAGATGATGAAGCTGAATTGGAGGATGATCTTGCATATGTTGACTGA
Protein sequence (LotjaGi3g1v0213500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLIGAEGVKIQASICKRHPIRNQIAEGAVYKISNFRIFPNDGVLRFTGHSCRLFFHGCTKMVRTTEDGVIPLNCWSFFD TRHIKIIRDTFTEVIDFVGLVIAASEEKVYIRNSKITKRMVIQLQDLRGNIHCVLEGEHVETFLEYLSSNWTEKPMMVIQ FVKVFTHRGRLFIDCIPPATKMYIEPVIEESVVLAGRLAEAGFQNGLVEFISRDIAYANLNADVLKFYPRRTISELLVEK EQGVFLVHAVVVAVLKGGYWCYPSCRCHNELNLRNDAFECSKCSMIFEKMIHRYRVKIEVFDASDSAVFVLFEREVQQLI SVSCEDLVSNIKVDDDSNVVYPQEFEDRIPGKELIFKIRNDGGITYNGAECYHVLAITEDPEAISLFHALQSNDSTANAQ FGTNTTGVENNEELEDKEVGGFSYNTPFEDVPESSTGSLLPKPLKKKLVLDFDDESEEDGNNVQVVEGFLNEKNSSNLVL SADEDNIRVEVDEDKSIDDADDDFECTMMEIAEEDELDDEAELEDDLAYVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 392 | 392 | 1.8E-48 | – | |
| PANTHER | 1 | 392 | 392 | 1.8E-48 | – | |
| Gene3D | 70 | 206 | 137 | 1.2E-10 | – | |
| CDD | 96 | 190 | 95 | 7.68272E-9 | – | |
| Gene3D | 224 | 377 | 154 | 1.9E-15 | – | |
| SUPERFAMILY | 227 | 363 | 137 | 3.08E-19 | ||
| Pfam | 247 | 359 | 113 | 1.7E-10 | ||
| CDD | 260 | 359 | 100 | 4.69583E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0213500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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