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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0217400 |
| Transcript ID | LotjaGi3g1v0217400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF674 family protein; TAIR: AT5G01120.1 hypothetical protein (DUF674); Swiss-Prot: sp|Q54YG2|ECMA_DICDI Extracellular matrix protein A; TrEMBL-Plants: tr|A0A072UGZ2|A0A072UGZ2_MEDTR DUF674 family protein; Found in the gene: LotjaGi3g1v0217400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:32730538..32733302) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGGGTTAGTTAAATTGTAAAAAGTGAAACAGTCCATTTTAGTCACACCATTTTCATCATGGCTCCTTCTCAGCCGC AGCCACAAGAGCCAAAAACCATTCCCATCAAAATCTTGTTAGACAAACAAGCCAACAAGATTGTCGCAGTGGAAGCAACA CAGGACTTCGTTGACACTCTCTTCAGTTTCCTCTCCCTTCCACTCGCCACCATCATTCACCTTGTCACAACCACCCCCAC CACCACCGACACTAACAGCGATCAACAGCCCCCGGAACCACCGTTCCTGAGCAGCATCAACAACCTCTACCAAAGCGTTC AAAATCTCTCCCCAAACGATGTCTGGAACCCTGTCTGCAAGCAAATGTTGCTGCGTCCCCGGAACCCCTGTGAAGCACTG TGCTCCAAGCTCTTTTTCAATGTTGATGATGCCACAACTATGGTTTTTGTCTGCGATTCATGTAACAAGTTTACTTTTTT TCCCAGCCTGGTTTGTACATGTGGGAAACCCGTTAGACAGCCCAAGAACTTGGATTCCGAGGGAAACGTGGAAGCCAAAG GTGGTGTGTTTGTGAAACAAAATGGGTCATTGTTTCTGGTCTCTGATGATTTGAAGGTTGTTCCTAGTTCTTTGGTGACA TCCATGCAGCATTTGCTGCAAATGGGGTATTCAGACTTGAATCAATTGGAGGAAATCACACAGAATATTGGCAAGCAGGA GGTAATTGTATGGGAAACTCTATTTTCTGTAATGTGTGTATCTCCTTGCAATTCTCATGCCCCATAATATCAATTTTGTT TGCATTGTATACCTAAAAGTGGATCTTTAGAACATGTATGAACCTTCACTCTAACACTTCTAGTTTTTAGTATAGTAGTT GTTTGACATAGGAATCTGTTAGGAACCTGGAAAGAATGGGGTAAAAGAAAAGACAGGTGTTATTGATTCAATGAAATTCA TTATTCAGCAAAAGCAAAGAAAGATTTCTCCTCCAATTACTTGATGCTAAGTGCTAAGAAAATTGAATGATCCCTCTGCC CTTACTCTAATTAACTAACTCCTGTAATTGTTTTTAACTTCTGTAATCATCTAACAAATTAGTTTAACTTACCTTTTAGC TAACTAACTTCTCTGACTGTACCCTTCACTTTTATCCTAATCTTATCAGTTATTGTCACCCCCATTATTCTCATTCAAAG CTGAATCTCAACCCAAGTAGCTTCTGCCAAAGCATTGTTCTTGTCTTGGCATAAATTGCTTATAATTTTCTTGGTGTATT AGGAGAAGGATGAATATCAGTTAATTAGTAGTCACAATTTTGGTTAATTCTTAATATTATGATGGATTACTTCGTGAGTC TTTGCCATACTATTGTTGTTTCACTTGTTTGGTTTCAACCTCTTGTATTTCCATCATGTAGTTTCATCTTGTTATTTTGA CTAAAAGTTCCATCCATGTTCTTTTGATGTATAGATATTGAAGCTCCTCAAGTACACCATAACCTCTCATGAGCCTCTGA CTAAAGCAATTTTAGGATGTGACTCCAAGAAGAAAGATAACCTGCCGGACCAGTTTGCATCAGCTGTTAGAGTAAGACCT AACACTAGTGACAGTAAAATGGATGTTAAGGTAGTGCGAAGTAAATCTCAGAACAAGATAATCTTTGTTGAAGCTAATGA AGATTTTGTTGACTTCATGTTTAGCTTCCTCACCATGCCATTGGGGTCCATTGTAAAGCTTTTGGGTGGTAACTCTTTTG TTGGATGTGTTGATAACTTGTATAAGAGCGTGGAAACCTTGGACTCTTCATGGTGTACAGACTCGCGCCCTTTGTTACTC AATCCTGGATTGGCACCGCAGTTTGGTTGTCCAAATCAGCCCCTCAACATTCCTGATGTAGAACCTCCTACCTATTATTA TGGTACTGGTGATACAAGACAAAAAATTAATGTTTATGAACCGTATCAGGGATATGTAGATAAAGTAGTAACCATAGAGG GAGGAGTTATTTCTAAGTCAAGCGGATTAGTTTATGATCCAAGAACATTGACTGCGCTGGACCCAAGATCCCCTAATAGA TCGAAAGAAGGTGTTGTGGGATTTGTGAAGAGACCAGCATTATATGGTGTAGGAGATGATCTAATAGTGAAACCACTATC TTATTGTCTTTCATATTTGAAAGAATTATGTCTTCCCCTTGAAGATCTTGAAGTGAAAGTGATAACCATTGGAGAGGCCG AGGTAAGGTGACTGTTTGTTATTACTACATTTATCAATTTTGTACTTGTTTTTTATCTCTTTGATCTTCCTTCTTTTCTG TTGTGGTGCAGGCCTTGAGCCTCCTTGGAGCTTCTTTGACATCAAAGTCTACCTTGACTAGTGGATTGGAGGACTTTTTG GATGTGCCAAAACAAGAATCAACATTGACATCAAAGTATACACATACTAGTAGGCTTGATTATCTTTTAAAGGAGGAGCC TAAACCAGAAGCCTAAGTTCTCGATCACTTGCTGTTTCTGCCTGTGTTTTGAATATTACTTTATGGTTTACAGTATGAGT CAGACTTTATGGTTTGGCTTCACCTATTACAGTATTACCACTACTTACTGGTTTTCGGTTCTTTTCCAGTTTTGTGGACT TTTAGTTGTATAATACTTTAGAACTGATTATCGTAAATATTAACAGCAACACTGCTTGTTATTGCGAATTTGATATCACT ATCCTGTATTATCATCTATCATTCACATATCATTTTAAGTTTTTA
CDS sequence (LotjaGi3g1v0217400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCCTTCTCAGCCGCAGCCACAAGAGCCAAAAACCATTCCCATCAAAATCTTGTTAGACAAACAAGCCAACAAGAT TGTCGCAGTGGAAGCAACACAGGACTTCGTTGACACTCTCTTCAGTTTCCTCTCCCTTCCACTCGCCACCATCATTCACC TTGTCACAACCACCCCCACCACCACCGACACTAACAGCGATCAACAGCCCCCGGAACCACCGTTCCTGAGCAGCATCAAC AACCTCTACCAAAGCGTTCAAAATCTCTCCCCAAACGATGTCTGGAACCCTGTCTGCAAGCAAATGTTGCTGCGTCCCCG GAACCCCTGTGAAGCACTGTGCTCCAAGCTCTTTTTCAATGTTGATGATGCCACAACTATGGTTTTTGTCTGCGATTCAT GTAACAAGTTTACTTTTTTTCCCAGCCTGGTTTGTACATGTGGGAAACCCGTTAGACAGCCCAAGAACTTGGATTCCGAG GGAAACGTGGAAGCCAAAGGTGGTGTGTTTGTGAAACAAAATGGGTCATTGTTTCTGGTCTCTGATGATTTGAAGGTTGT TCCTAGTTCTTTGGTGACATCCATGCAGCATTTGCTGCAAATGGGGTATTCAGACTTGAATCAATTGGAGGAAATCACAC AGAATATTGGCAAGCAGGAGATATTGAAGCTCCTCAAGTACACCATAACCTCTCATGAGCCTCTGACTAAAGCAATTTTA GGATGTGACTCCAAGAAGAAAGATAACCTGCCGGACCAGTTTGCATCAGCTGTTAGAGTAAGACCTAACACTAGTGACAG TAAAATGGATGTTAAGGTAGTGCGAAGTAAATCTCAGAACAAGATAATCTTTGTTGAAGCTAATGAAGATTTTGTTGACT TCATGTTTAGCTTCCTCACCATGCCATTGGGGTCCATTGTAAAGCTTTTGGGTGGTAACTCTTTTGTTGGATGTGTTGAT AACTTGTATAAGAGCGTGGAAACCTTGGACTCTTCATGGTGTACAGACTCGCGCCCTTTGTTACTCAATCCTGGATTGGC ACCGCAGTTTGGTTGTCCAAATCAGCCCCTCAACATTCCTGATGTAGAACCTCCTACCTATTATTATGGTACTGGTGATA CAAGACAAAAAATTAATGTTTATGAACCGTATCAGGGATATGTAGATAAAGTAGTAACCATAGAGGGAGGAGTTATTTCT AAGTCAAGCGGATTAGTTTATGATCCAAGAACATTGACTGCGCTGGACCCAAGATCCCCTAATAGATCGAAAGAAGGTGT TGTGGGATTTGTGAAGAGACCAGCATTATATGGTGTAGGAGATGATCTAATAGTGAAACCACTATCTTATTGTCTTTCAT ATTTGAAAGAATTATGTCTTCCCCTTGAAGATCTTGAAGTGAAAGTGATAACCATTGGAGAGGCCGAGGTAAGGTGA
Protein sequence (LotjaGi3g1v0217400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPSQPQPQEPKTIPIKILLDKQANKIVAVEATQDFVDTLFSFLSLPLATIIHLVTTTPTTTDTNSDQQPPEPPFLSSIN NLYQSVQNLSPNDVWNPVCKQMLLRPRNPCEALCSKLFFNVDDATTMVFVCDSCNKFTFFPSLVCTCGKPVRQPKNLDSE GNVEAKGGVFVKQNGSLFLVSDDLKVVPSSLVTSMQHLLQMGYSDLNQLEEITQNIGKQEILKLLKYTITSHEPLTKAIL GCDSKKKDNLPDQFASAVRVRPNTSDSKMDVKVVRSKSQNKIIFVEANEDFVDFMFSFLTMPLGSIVKLLGGNSFVGCVD NLYKSVETLDSSWCTDSRPLLLNPGLAPQFGCPNQPLNIPDVEPPTYYYGTGDTRQKINVYEPYQGYVDKVVTIEGGVIS KSSGLVYDPRTLTALDPRSPNRSKEGVVGFVKRPALYGVGDDLIVKPLSYCLSYLKELCLPLEDLEVKVITIGEAEVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 476 | 469 | 9.6E-165 | – | |
| PANTHER | 8 | 476 | 469 | 9.6E-165 | ||
| Pfam | 12 | 474 | 463 | 5.7E-119 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0217400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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