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LotjaGi3g1v0220400.1

Overview

Field Value
Gene ID LotjaGi3g1v0220400
Transcript ID LotjaGi3g1v0220400.1
Lotus japonicus genome version Gifu v1.2
Description Methyltransferase-like protein; TAIR: AT1G19640.1 jasmonic acid carboxyl methyltransferase; Swiss-Prot: sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1; TrEMBL-Plants: tr|I3T2M7|I3T2M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0220400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:33195060..33196989) extracted from Lotus japonicus Gifu genome v1.2.

CCTCAAGGTGTTTTAAATAATACATGTAATAATAAGTGCCAATTTTGACTCTCTCAACCAACATCTGAATACATAAATTC ACATTGAATTTGCATTTCATTGACAAAGCTGTGTTCTTGTTATTGCAGGTTCTATATCTGAGAAACAGTCGCAGGGCTTC CACTTGTTAATCTGACTGAGAGGTAATCTTGCCGTTATAATCACTTGCTGTGTTCTGCAGTGCATATATATATACTTTAT GGTCATACTATTATCATTGTTGTCGACATTGTTACTAAGTTTTTTTTCTTTTTTTTTTCTTCAGAAAAATGTGATATTGG ATATAGATCGAGTCAATACTAGAAAAAAGTATTAAGAGATTGCTGCATCACACCCCTTTTAAAAGTAATATAAAAGTGGC AGATTGAGGGTGCTCTTCGGGACCAAACGCACTTCTAGTGGTGTATAATATAATTACTTTCATCAGTGAAAGTAAACGGA GTTTAAATTATGAGGCACCTATACTGCAAGTCTATCTTAATGATCTATTTGGAAATGATTTTAATGGTGTCTTCAAGTTA CTCCCTGATTTCTACCAAAAGATACTAGAGATGGGAGACAATGTTGGAGCATGTTTTATAAATGCAACTCCAGGGAACTT TTATGGGAGGCTCTTTCCTAATAATTACATCCATTTCTTTTATTCTTCAAATAGTCTTCATTGGCTCTCACAGGTATTAA AGTTGTTAAATTTGTGTTTGCAGATCAAAGCACAAAATAATAAAAAAATATTGTGTGTGTGTGTGGCTTTTTTCACAACA GGCTCCAGAAGAATTGACAAACGGAGCTGAGCCACTAAACAAAGGTCATATTTATTTAACAAACACAAGCCCTACAGTGG TGTATAAAGCATACTTTGAGCAATTTCAAAAAGATTTCAAACTATTTCTTCAATCACGTTCAGAAGAATTGACACTTGAT GGAAGTATGGTACTATCATTACTTGGAAGAAAAAATTATTTATTTGAAAAAGGTGACGCTGGGCCCTTGTTTGACTTGGT ACTGAAGGACATGGTCTTAGAGGTATACAACAAAATACAATTTTGATTATCATTATTATGTAAGTTTTTTGTTGTGGTAA CATGCTAGTAACAACTAATTATGTTCCATCATAATTAATACATGTTCAGGGGTTGATTGAAAAGACAACATTGGATTGCT TTAACATGCCTTTCTATATTCCAACTGTGGAGGAAGTCAAGCAAATAATCGAGGCAGAAGGATCCTTTACCCTTGAAAGA TTGGAAATTATTCAAATATGTTTGAATGAACACTTTTCAGATGACATAGATAGCCAAGTGAGAAGAGAGATCATTACGAA GACATTGAGAGCTGTCAAGGAACCTCTCTTTTCAGCTGCATTCGGTGAAAATATCATGGACGAATTATTCTCAAGATTTG CAAAAAAGATTTCACTCATTGAGTTTGAGTACACAACTTTAATCATGTCCATGACAAAGGCTACATGAAGAAGGGGAACA AATAATGTATACTTGAAATATTAAGTTATCCATTATGTCTTGAGATTAAAATTGAAGTTGGCCTTCTCTGGTCAAGTAGC ATTTGCCGCTGCATATTCCTCAGTTCAACTTGTGAGGGTCTACATCATCTACTATGTGTTGTTATTAATCTACTATGTGT TGTTATTAATTGTTTTCTTGCTTTTTTGTCAAAAAACAACCTGATGTTGAAGTAGATGTTGTGCCATCTGCCCACGTGTA GCACAAGTCATTAGTCCCTTACTTGGAGTGCTTATGTGTGTCCTAGAAAATCTTGTGAAGATTTGTTTTATGGTTACTTG CGGTTCAAGTAGTTGTACCGTGATTGCATTTAACGTGGGCTGATTTATTTGTTGATACAATCTTTGATTGGGGATTTATT TCTATTTTTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTACTATCATTACTTGGAAGAAAAAATTATTTATTTGAAAAAGGTGACGCTGGGCCCTTGTTTGACTTGGTACTGAA GGACATGGTCTTAGAGGGGTTGATTGAAAAGACAACATTGGATTGCTTTAACATGCCTTTCTATATTCCAACTGTGGAGG AAGTCAAGCAAATAATCGAGGCAGAAGGATCCTTTACCCTTGAAAGATTGGAAATTATTCAAATATGTTTGAATGAACAC TTTTCAGATGACATAGATAGCCAAGTGAGAAGAGAGATCATTACGAAGACATTGAGAGCTGTCAAGGAACCTCTCTTTTC AGCTGCATTCGGTGAAAATATCATGGACGAATTATTCTCAAGATTTGCAAAAAAGATTTCACTCATTGAGTTTGAGTACA CAACTTTAATCATGTCCATGACAAAGGCTACATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0220400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVLSLLGRKNYLFEKGDAGPLFDLVLKDMVLEGLIEKTTLDCFNMPFYIPTVEEVKQIIEAEGSFTLERLEIIQICLNEH FSDDIDSQVRREIITKTLRAVKEPLFSAAFGENIMDELFSRFAKKISLIEFEYTTLIMSMTKAT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.150
1 76 76 1.8E-34 –
PANTHER
PTHR31009:SF69
1 143 143 5.1E-43 –
Pfam
PF03492
1 140 140 1.6E-31
IPR005299
PANTHER
PTHR31009
1 143 143 5.1E-43
IPR005299
SUPERFAMILY
SSF53335
1 142 142 1.99E-28
IPR029063
Gene3D
G3DSA:1.10.1200.270
10 127 118 1.8E-34
IPR042086

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0220400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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