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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0222200 |
| Transcript ID | LotjaGi3g1v0222200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/T7H20-70 protein; TAIR: AT5G02020.1 E3 ubiquitin-protein ligase RLIM-like protein; Swiss-Prot: sp|P28356|HXD9_HUMAN Homeobox protein Hox-D9; TrEMBL-Plants: tr|I3S542|I3S542_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0222200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:33571124..33574353) extracted from Lotus japonicus Gifu genome v1.2.
CAAACACACTGACGCATGCTCTCTATCTCATTTTCTCCCTTTCCTCCTCCTTATTCTGATTTCTTCTATCACGTCTTCTC TTCTTCTCTTCCTTTGCTTCTTCCCAAGAATTACAAAATAAAAACGCAATTGAGTTTTCTCATTTTCTCAGGCGGTGGTA GATGTATCTTTCTGGGGTTGTCTTTATATAAAAAGACTCTGAACAATTCACTTTTGAGGTACTGATTTTCATACAGAGGT TTATAGAGAGGTAGGAAGAGAATGGATGAAAAGAAGCAAAAGGGTACTTCTTCTTCCTTCACTGCTGAGCTTTTTGGTTC CAAAGAGTCACACCCTTCTCCTTCTTCTGGGATTTTTGGGTCTATTTTTTCTCCTCCATCGCCAAAGGTGATTGTTTTAT TCATTTCTAATGTTCCTCTGTTTTATGCTTTTGCTTTGTTTTTATTCAATCCCTTTGCTTTCTTTCTTCCCCTACATTTT ATATATAAGTTTTTCAATATAATGAACAAAGTTGAAAGGCAATGAGCATTTACTGTTGTTGAATTGCTAATGGGGATGCT TGAATTTAGCTAGGTGCTGAAATTCTTATTTGAATCATATAACAAGTTCATGGGGCATCGGGTGCGTGTTTGGATCAACG TAATCGCAATTGATTTTTGATAAATTGATTACAATAAAAGTTACTTCAGAGTGACAGTGATTTATGTCCAGATACATTTA ACAAAAAGTGTTTTTAATTGAGTAATACTATTAAATTCAATTATTAGATTTCGGAATTGATTATGTTCAACGCAGAAGCT ACTCTTCCTAGCTTGTAACACAACTGATTTTGCTTTTTGAGACCAGAATCAATTCTCTTAAAACGACTCGCGAACCTCTT TATTATAATCCAAAATTTATTTTATTTTATCAGAATTGATTATGAGGTTCTACAACAGGGAACCAAACATGTTCCGAGTC ATGTTGAAACAGCTCTTACATTTTTGTTGGTTGTGTTGATTCAGGTACTAGGGAGAGAATCTCTGCGTTCTGAATTGAGC GTCAAAACTGCCAATGAGACATGGAGCTCCAAAATTGGTATTCAAGGTAGGGTACTCTGTTTCAGCCTCTGGTGTTAGAG ATTTGGTGTGTTTGTATAATTTTTGATAAAACTTTTAACATGTAGATATTGACAAAATCCGGCAATAATAAACTTCTATT AGCACCATAATAACTATTTTCCACTTTTTTGCATTTTCCTTATAGTTCTTGTGTCTTAATTATCTGCACCCATAATTGTA GTTAGTGGTCTTGATTCCATTCACCAATATCTTAGCCTCATTATGGTTAGTTATTAGGAGAACTTGTATATTTGAAAATG TTCATCAAAATAAATTTGTCACTTCTATTACTGCGTTTGATCTAATTAAGTTTAACTAGTTGAGATTTTGCATATATTAA ATATTTTGAGATTTTTCATATTAAGTTTAACTAGTTGATAACTTTAGATATGGTATTTTCTGTCTCTTCCAATTTTTCCT GGTTTTCCTTTAAATACAGATGACGTTTCAAAGGGCAATTATGGAGAAGCTCAGCACACAGAAAATAAGGATATGAGTTT CATCTATCAGCATCAAAGAATTCCACCATGTCCCCTTAGTTCATCAATTTATTATGGTGGCCAGGATACATATTATCATT CTCAAAGCACACAGAATGCAGGATCAAACACTTTGGTGAGTGAGTGGTATTTCATTTATTATTGGCTGTATCGGTCCAAA ATCCATGTAAAAGATATCAACGAGTTTTATGTTGGCTGTCGAAAGCCTAACACGACTTTTTTATTGTTATTTTAACAGCA CAAGAACGATGTCGGAAATGATGATTCAGGAATGGCTTCTAGAGGAAACTGGTGGCAAGGTATGTCATGAATGAATGAAT ATACTTGTTCAATAGATTTGTGGTTTTAAAGATTGCGTATTGCTTGTACTGGTTTGCCATAATGTTCTCATTCTTTTGCT GACTTTCTGTCCACAGGGTCTCTCTATTATTAAGATCACCCTTGTCAATGCTAGATATATGCTCCTCTCAAGGTATATAT CATCTTCTGAAACCTATTGCCAAATTGTATTTAGATGTCAGATAGTTTTATCTTTCTTTTCAACTTCAAAACTTAACTAC TTTGAAAAGTAAGAAGTCTTACAAGATTGGTATGAAGGGTTTACCAATGAAAGGGAGGAAGAAAAGTCATGAATTTGAGC TAAACCTAACTCAATCATCAAAAGTTAGCTCATGATTCTTTGCTTTGACAATATCTCTAATTGACGAAGAATCTCAACAT ACTTCTCATGCCCATATATAACTAGACACCAAGAGTGCGGATGTTATAATACTGTTTTTGGACTGCAAATCTGCTGGGCC ATGTTAATTACACTGCGAAAACCGCAGGGTCAGGTAGTTTGCACCGGGAAATGCACGGAGCTAGGATGATTTTTGGACAG TGGTGGCTGATCCAATATTGGATCTAGGATAAACCATGACATCATTTTGAATTTGAGCAAACTTTTAGAGTTGAGTTAGC CTTAGCTTAAATTCAAGAAAAATGAGATAAAAGTTACATTTGCAACCAACTCTATACTCAATTGAATAAGAATACCAAAA GTTGAAAGGAAAATGATCAGACTGAGATCTTATTATTTCTGGATTCATAAGTCTGATTTTGATTTTAATATTTAGTATTC ATCAGTTGAATGGATGTTGCAGGTACATAGCTGGACAGTTTAGCAGCATAGTCTATGGAAGAACAATAAAGTAGTCAGGA CATTGAGGACAGTTAGTTGCTTTCTTAGGCCAGACATGAAACTGCAATCATTTGCCTTTCTTTTTATTTTGCTGTAAATT ATATAGTACTTGGTCATGCTATCTTGCAAAAGTTGTATGATATATGTAGGTATTCTATATGTATTATATCAGCTACTGTC CTGGGGCTGAAACTTAATTTGAATTTATTAAAGAAATTCTCTTCCCAGGTTTCTCCTCTACTTTGTATTTCAGCTATGAT AACTTATACATACTCCTATCACAGTATGGCATACTCATTTTACTATGATTGCTGGGAAAAAGTGACTACTTTTGTGAAAT GGGACATCTTCTTGTTTATAAGTGTTCTACCCAGTGAACTTGGGAGAGGCCAAGTAATAAACTAGAGGGAAACTTTAAAA TCTACATTTAAGTGAACACGAGGTCTCTAG
CDS sequence (LotjaGi3g1v0222200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAAAGAAGCAAAAGGGTACTTCTTCTTCCTTCACTGCTGAGCTTTTTGGTTCCAAAGAGTCACACCCTTCTCC TTCTTCTGGGATTTTTGGGTCTATTTTTTCTCCTCCATCGCCAAAGGTACTAGGGAGAGAATCTCTGCGTTCTGAATTGA GCGTCAAAACTGCCAATGAGACATGGAGCTCCAAAATTGGTATTCAAGATGACGTTTCAAAGGGCAATTATGGAGAAGCT CAGCACACAGAAAATAAGGATATGAGTTTCATCTATCAGCATCAAAGAATTCCACCATGTCCCCTTAGTTCATCAATTTA TTATGGTGGCCAGGATACATATTATCATTCTCAAAGCACACAGAATGCAGGATCAAACACTTTGCACAAGAACGATGTCG GAAATGATGATTCAGGAATGGCTTCTAGAGGAAACTGGTGGCAAGGGTCTCTCTATTATTAA
Protein sequence (LotjaGi3g1v0222200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEKKQKGTSSSFTAELFGSKESHPSPSSGIFGSIFSPPSPKVLGRESLRSELSVKTANETWSSKIGIQDDVSKGNYGEA QHTENKDMSFIYQHQRIPPCPLSSSIYYGGQDTYYHSQSTQNAGSNTLHKNDVGNDDSGMASRGNWWQGSLYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 152 | 152 | 2.4E-61 | – | |
| PANTHER | 1 | 152 | 152 | 2.4E-61 | – | |
| MobiDBLite | 10 | 35 | 26 | - | – | |
| MobiDBLite | 120 | 140 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0222200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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