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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0223400 |
| Transcript ID | LotjaGi3g1v0223400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF674 family protein; TAIR: AT5G01120.1 hypothetical protein (DUF674); Swiss-Prot: sp|P22711|TIN_DROME Muscle-specific homeobox protein tinman; TrEMBL-Plants: tr|A0A072UGZ2|A0A072UGZ2_MEDTR DUF674 family protein; Found in the gene: LotjaGi3g1v0223400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:34163989..34168082) extracted from Lotus japonicus Gifu genome v1.2.
GTGAACCTTTTTGGATGATATGAATGATTAGACCTCAAAGGGAAGTATATTCTGGTGGTTTCTTTGGTAAGATGTAAAAG AAATTTCTTTCCTCCGCCACAAGATATAAGAAATGGTTACCAGAAGACATGTTTGGTTAAAACATAAATCTGACGCAAAG CACATAATAAGAAGCTTTCAAGGGAATCAGTGTGAAATGCTGAGGAATAACAACTGGTGAGTGAGTCAACACAAAAAAAA ACAAATCGATGAAACTCCTACAATACATCCAAGGTATAGATTCTTAAGTTTCATCCGAATTTGACTTAAGTATACGGTAG TATGGTGGAAGCCGTTTGAGAAGGTGCAGAAAAACCCATTTTAGTGTCATCATGGCTTCCGAAGCGCAGCCACAAGAGAC AAAAACCCTTCCCCATCAAAATCTTGTTCGACAAACAAACCAACAAAGTTGTCGCAGTTGAAGCAACCAACGACTTCGTC GACACCCTCTTCAGTTTTCTGTCCCTTCCACTCGGCACCATCACTCGCCTTGTCGCCACAAACAGCAACAACAATCTCTA CCAAAGCGTCAAGAATCTCTCCCCTAACGATGTCTGGAACCCTGTCTGCAAGGAAATGTTGCTGCGTCCCCAGAACCCCT GTGAAGCGCTTTGCTCGAAGCTGGTTTTGAATGTTGATGACACAGAACCCGCAACAAAGGTTTATGTGTGCGCTTCCTGT GACAAGTTTACTACTTTTCCTAATCTGGTTTGTACCTGTGGAAAACCCGTTAGAGAACCCAAGAATTTGGATTCCGAGGG TAGCGTGGAAGTCAAAGGTGGAGTGTTTGTGAAAGGGACTGAGTCATCTTTTCTGGTCTTTGATGATTTGAAGATTGTGC CTAGTTCTTTTGTGACCTTCATGCCGCTGCTGCTGCAAATGGGGTATTCAGACTTGACTCAACTAGAGGAAATCACACAG AATATTGGCATGCAAGAGGTAATTGTATGGGAAACTCTATTATGTGTAATGTGTGTATGTCTTACAATTCCCATGCCCCC ATAACATCAATTTTGATATACTTTTTGTACTTGCATTGGATTTTTAGAACATTCATGAACCCAACTCTATAAACATTGGA TCTGTTTAGGGACATGAAAAGTTTTGCAATTTAGGTTAGGCCCAACTTTACCCCAATTTCTAGAGTAGTTGCTAACTTGC TATTTGACATAGGAACTGTTAGGGACATTTGGGTGAGACCTAACTCTTGCCCAAAAGTTAGCTTATGGATGAAGGTTTCT TTAACATTCAAAGGAATGGGGTAAAATTAAATGTGGTTTTCATTGATTGAATGAAATTGAGCAAAAACAAAGAGAAAGAT GTCTCCTCCAAGGGTTTTCCCTTACAACTGAGTCATGGCTCTGGTTACTTGATGCTAGCAAATGTGAACGAGTACTCTGC CCCTACTCTAATTGACTAACTTCTGTAATCGTTTAACAAGTTAATTAACTTTTGTCCGCTTTACTTCCATGATCGAGTCA TTGACTGCTCAACAAATCATTTATAGGAAACCCCAGCATTCTCATACAGAATTGAATTTTAACACAATTAGCTTCCGCCT AAGCATTGTTCATGTCTCGGCATAAATTGCATCTAAATTTCTCGGTGTCCAAAAAAAAGACGGGCGAATATCAGTTAGTT AGTACTTTGTAGTCACAATTTTGGTTAGGTCTTATGTTATGATGGCTTACTTCGTCAGTCTTTGTCATACTATTATTGTT TGGTTTATCTTCTTCTATATCCATCACGTGATATCATCTGATCAGTAAAACATTTTTAAAAGAGAGAAAATAAAAACAAA AATGGAGAGTTATACGTGTGTGGTTTGTTTGTTATCTTGACTAAAAGTTCCCATCTGTCCTTTTGATGTTTAGATATTGA AGATCCTCATGTACACCTTAACCTCTCGTGAGCCTCTGACAAATGCAATTTTGGGAAGTGACTCCAAGAAGAAAGACAAC CCTCAAAACCTGTTTGCATCAGCAGTTAAGGCAAGGGCTAACATTGGTGACAGTAAAATGGATGTTAAGGTAGTGCGAAG TAAATCTCAGAACAAGATAATCTTTGCTGAAGCCAATGCAGATTTTGTTGACTTCATTTTTAGCCTCCTTACCATACCAT TGGGGTCCATTGTAAAGCTTTTGGGTGGTCAATCTTTTGTTGGATGTGTTGATAATTTGTATAAGAGCGTGGAGAGCTTG GACTCTTCATGGTGTACAGACTCGCATCCTTTATTACTCAATCCTGGATTGGCACTGCAGTTTGGTTGTCCAAATCAGCC TCTCAACATTCCTGATGTAGAACCCCCTAGCTATTATTATGGTACTGGTGATACAAGAAAAACAAGGCCGGTTTATGTAA ATTATGAAGGATATGTAGATCAAGTAGTAACAATAAAGGGAGGAGTTATTTCTAAATCAAGGGGATTAGTTTACAATCCA AGAACCTTGACCGCGCTGGACCCGAGATCCCCCAACAGATTGAAAGAAGGTAGTGTAGGATTTGTCAAAAGACCTGCATC ATATGGTGTAGGAGATGATCTAAACGTGAAACTACTGTCTGCTATTTCTTGCATTTCATATTTGAAAGAATTAAGCCTTC CCCTTGATGATATTGAAGTGAAGGTGGTACGCATTGGGGAGGCAGAGGTAAGGTGACTGACTGTTATTACTACATTTATA ATTCTTTTTCTTGTTTATAGCATTTTGATCTTTCTTTCTTTTCTCTCCCCTCCCTTGTGGTGCAGGCCTTGAGCCTCCTT GGAGCTTCCTTGACATTGAAGTCTACCTTGACTAGTGGACTGGAGGACTTTTTGGATGTGCCAAAACAAGGACCAACATT GACATCAAAGGTCACACAAACTAGTCAGTTAGATGATCTTTCTATGGAGGAGCCTAAACCAGAAGCCAGAAGCCGGCAGC TATATTTGGATTAATGAAAGGTGATGGAATGGAGGGGCACGTAATGGAATCACATTATATCTACTTATTTGTCAAAAAAT TATGCAACGGAATGGAACAAAATGAATAGAACATGATGGAATCCATTCCGTCGCACTGCATTGTAGTATCTACTTATTTT TATTTCCTCCCAATTCGGATGATTGAATCAACATTAAGTTTATTTTTATAATTATGAAATTACTTCTTTATCCTTCTTTT TTAATCTTTCACAAAAGATATTATCGTGAGAACTTTAAAGACAAGGGTAATAAAGGAATACCAAAGTTATAATTTATTTC GTTCCGTTCCTTCTCTGGCACAAGATGTTTTCTTGAATGGTCTTCACCCAATCTGACAAAATGCTGCCTTGTGATGTGAT TTTTAATCGTAATCTACAAGAGGGAGAAGAACTTTGGAACTAAAAGAAGAAACTACGGAGTGCTTTCAGGAAACTAGAAC ACAAATGTTGTTTCATAAATCATCACATATACTATAGGTATCTCCATTTGAAACTACTGGCTTTCCCTAATTTTCATATG CAAAAACATATTACGCTCTTTCAGGAACAGATTAATTTCAGAACAAATTCAATGTACGAACCTACATAAAAACAAGGGGG TTTTCCAACTATTTTGGGTCAATTTCATGAATCTTTGTTCACTCTTCCATAGTCTACCAATTTTGGAAGTTCATAAAAAC TTTAGTAAGATCTTTAAATTTGACACTCTTATATTATTCCAGAGGATGCTTGATCTCACCCATTTCGACAAATTCATTCA CATTATCCTCTATGAAAGGCTGAAGCTGAACCCTTGCAGCATGTAATGTTGCTTAAATTGACAAAACTGAAAATTTCTGT TTTCTCAAACTTGACAGAAAGAGCCTCAAAACTACAAATGGCAACTAGTTTAAACCAATACAGACATGCAATGCATACTT AACAATTAGTGAAGAAACTTCAGAAAATTGAATTACAATGTTATTGACTGCTGGTAAGGAAGGCCTAATCTGCGTCCCGA GGACTAGATACAAAACAAAATATATTGTTCTAAACCTCAGGATGCAGATTACGTGATACTGACCCAACACTGATTCTTCC ATGAGGGATTGAAC
CDS sequence (LotjaGi3g1v0223400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCTGCGTCCCCAGAACCCCTGTGAAGCGCTTTGCTCGAAGCTGGTTTTGAATGTTGATGACACAGAACCCGCAAC AAAGGTTTATGTGTGCGCTTCCTGTGACAAGTTTACTACTTTTCCTAATCTGGTTTGTACCTGTGGAAAACCCGTTAGAG AACCCAAGAATTTGGATTCCGAGGGTAGCGTGGAAGTCAAAGGTGGAGTGTTTGTGAAAGGGACTGAGTCATCTTTTCTG GTCTTTGATGATTTGAAGATTGTGCCTAGTTCTTTTGTGACCTTCATGCCGCTGCTGCTGCAAATGGGGTATTCAGACTT GACTCAACTAGAGGAAATCACACAGAATATTGGCATGCAAGAGATATTGAAGATCCTCATGTACACCTTAACCTCTCGTG AGCCTCTGACAAATGCAATTTTGGGAAGTGACTCCAAGAAGAAAGACAACCCTCAAAACCTGTTTGCATCAGCAGTTAAG GCAAGGGCTAACATTGGTGACAGTAAAATGGATGTTAAGGTAGTGCGAAGTAAATCTCAGAACAAGATAATCTTTGCTGA AGCCAATGCAGATTTTGTTGACTTCATTTTTAGCCTCCTTACCATACCATTGGGGTCCATTGTAAAGCTTTTGGGTGGTC AATCTTTTGTTGGATGTGTTGATAATTTGTATAAGAGCGTGGAGAGCTTGGACTCTTCATGGTGTACAGACTCGCATCCT TTATTACTCAATCCTGGATTGGCACTGCAGTTTGGTTGTCCAAATCAGCCTCTCAACATTCCTGATGTAGAACCCCCTAG CTATTATTATGGTACTGGTGATACAAGAAAAACAAGGCCGGTTTATGTAAATTATGAAGGATATGTAGATCAAGTAGTAA CAATAAAGGGAGGAGTTATTTCTAAATCAAGGGGATTAGTTTACAATCCAAGAACCTTGACCGCGCTGGACCCGAGATCC CCCAACAGATTGAAAGAAGGTAGTGTAGGATTTGTCAAAAGACCTGCATCATATGGTGTAGGAGATGATCTAAACGTGAA ACTACTGTCTGCTATTTCTTGCATTTCATATTTGAAAGAATTAAGCCTTCCCCTTGATGATATTGAAGTGAAGGTGGTAC GCATTGGGGAGGCAGAGGTAAGGTGA
Protein sequence (LotjaGi3g1v0223400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLRPQNPCEALCSKLVLNVDDTEPATKVYVCASCDKFTTFPNLVCTCGKPVREPKNLDSEGSVEVKGGVFVKGTESSFL VFDDLKIVPSSFVTFMPLLLQMGYSDLTQLEEITQNIGMQEILKILMYTLTSREPLTNAILGSDSKKKDNPQNLFASAVK ARANIGDSKMDVKVVRSKSQNKIIFAEANADFVDFIFSLLTIPLGSIVKLLGGQSFVGCVDNLYKSVESLDSSWCTDSHP LLLNPGLALQFGCPNQPLNIPDVEPPSYYYGTGDTRKTRPVYVNYEGYVDQVVTIKGGVISKSRGLVYNPRTLTALDPRS PNRLKEGSVGFVKRPASYGVGDDLNVKLLSAISCISYLKELSLPLDDIEVKVVRIGEAEVR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 379 | 379 | 4.9E-106 | – | |
| Pfam | 1 | 377 | 377 | 2.2E-89 | ||
| PANTHER | 1 | 379 | 379 | 4.9E-106 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0223400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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