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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0230300 |
| Transcript ID | LotjaGi3g1v0230300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucose-induced degradation protein 4-like protein; TAIR: AT2G37680.2 glucose-induced degradation-like protein; Swiss-Prot: sp|Q8IVV7|GID4_HUMAN Glucose-induced degradation protein 4 homolog; TrEMBL-Plants: tr|I3T002|I3T002_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0230300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:35975673..35979556) extracted from Lotus japonicus Gifu genome v1.2.
GAATTAGAAAATGGTTTCTGTAAGTTGTGTTTGTTTCTTGTAGTTTATTCTTGTATGTTTCTCGTTTTCGTGCAAAGCTA ACAGAGGTTTCGTTCGTGTCTGTCCCAAATTTTCACAGAGAAAAATTCGGTTCCGCTACCTCCCTCCATCACGCCACAGG ATCATGCCTGTCAGAGTATTGGAAAACGTCGCCGTTTCTCAAACAGTTCTCGGTAACTACCCTTTCATTCTCATCGTTCA TCATTTCTCATCATGCTGTAAATTGTCAAAAAAATTGAAACTTCTTCTCCATTTTGTGTTCTTCTCTGATTTTTGGTTAG TGGGTATGTTCGGATTTTACCTCATTTTAACTCTATGTGTTTTGTTGTTTTTGAATGCTGCTGTTGAATTCTTCATGTAT TTTTTGATGGTTTCTGTTTAGGTCCAAATGCTAGGCGTGGTTCATTTCAATCTTGTAGTCTTCTACGTGTTGGGCAGGTA CTTTCCCATGTTTTTGTTCATCATATTTGATCTGCTAGACTTTGTGTGGATCTTGAAGTAAATGGGGATTATGGGATAGA AGGTTGAAAAATCTGGTTGGGAAATTGGGTTTGGCTGCAAAAAAATTAGGGGTTTTGTGAAACGGATCACGTTTAGGCAG TGGTCAAGCTATTATCGGGATTAATGTGCTATTATACAATTTAATCACATGTAAGGTCAGATTTAGCCATACAATGATTA TGTGATAGATTTTAATAATTTAATCACTCAGGTGAATTTTAATTGCATAATCGTTAGAGTAAGGGATTGAATCGAGATTT TGACTACTGTCTGGGACTAGATTAATGTTACATTATAATCTATTATATTTATAACTTATTTCAAAGTGCCTGGTTCTGCC TTTCATTGGGTAAATGTGGTTGAGAGCATATCGAATCTCAATGGCAGCATTAAATGTTATGATTGGTACCTATTGTAAGG ATGATGTAGTGTCACTGTCAGCTATTGGTGAGGGAGAGAATTACTAAAACCTCTGTCACACTCATTAGAGTGGGTTTACA GTTCTTTGCTTGGCATATAAGTTCATTTCAAGCAGCAGTTCTGCTAGGGACAGGTGAGAAAGGTAGAGTGCAGTGAGAAA GATAGAGTGGAGTGAAATGACCTTACTTATCCATAAAATGTTCATTTTCAATTTATCTTCATATTTTTATCCCTACCAGT TATAGTTACTTGCATTTAGTTATTTGAAGGGTATTGTGGTCTGCAATTCTTTATCTTGGCCAGGGGAGACTCTTTTATTT CACTACTCAAATAGGATTAGGGAATAGAGAGCTTATAACTGATTCTGAAGTTTCTGGAAGCATAGCCTAACGCTTGTTTT GCTGAATTTTCAAGCCTAAGATGTTTGGGTTTGGAGGCCAATACTTGCAACCAATATCAACTATTTCAGATTTTGATGTG AAAAAGGGAAGAATCCTGCTGTGTTGGGTACATATATGCGCGTATTGTACGGCTTTCTGGTTGCTGTACCGATGTTTCAT AGTCATATAGAGAACAACTTCAACTTTTAAACCGCTTAATTACATTTCACATCTTAGGTCTTTCAGCCTGTAATTCTTAT TAGTTTGAAGTTATAGTACTGTACATGCTCAAGGTGTTTATATTTGCAGGCCTTTTCTGGCACTCAGAATGTTTCAAGCC TACAAAAGGATGAAGCATGGAGAGTAAATGTCCGTATACAAGGATGTGACCTAGAGCATGGTTATCTATGTGGCACCATG GAGGCTCTTAATGTTCCTATGGCAGACACGCCGGTAAATAGTTTATATTCCTTAAGAATAGAGACAGAATAGCAACCACT TTTCTCCTTAAAAAATAATGCATGTTTATGATTTTGGTTCTAGTTTAATTTGAAATATTTGTTGTGTTAATCTGTAGATT TAGGACACCACTAATCTGTAGAAGATTTTAATCAGATTAACCTATCAGTTTTATATAATCTGTAGATTTATGTTTCTTCA ACTTCCATTTGGTGGTATGCAGTGATATTTGTTAAGTACTAAAGTGTCTAACTGGCCTTTTGAATTCTAACATTGTTGTT AGCCTACAGTGTCCTAGAAACTGTCATAGCTATTTACACTCTTTATTATTAATTTGCTTAGTTCATAACCACTCTTCTGA TTTTATGTTGCTGCAGTGACCAATATGATCCAGACATTAATTAGTTTCTACGCTTTTGGCATAGCATATTTTTTTATTCA TTACAGGGCCTAATAAGTTCAGCAGGATTTAACTTCAATGCAATTTTAAATTGAGAATACTGAAATATATACTATTCCTG CTTCAAGAATCAAAATTTTCTTTAATGGTGTTGTCATGTAGAGAAAATATATTAAATAAACCAACTATTTTTTTCTGATT TTTTGCCTTATATCCCCTGATTTTTTGTTCTTGGAGGTTTTCAGAAAGATAGAAAATTCACCACGATTTCACTTTGTTTT TAATGATTTATATCAGGTAGTAACATTCTGGGAAGGGGAGATTGTTGATATCAAGAATTATACTTTCTTCACTGGCAAAT GGGAGGCAGCGTACGTTATTATGGAGTAACAATTAAGTCGAGCATAAGGAGCTTAATTTGAAAAATGCCGATGATGCTCA CTTATGTTTGCTTCCTTTTTCTTTTTATTCAGACCAGAGGATGATATAAGGCACTGGACTAAGTTTCCATCCTTTTCTCC CATATTGGTAAAAGACCTATACTTTGGTGTCGTCAGCAAAATACATCGCATGTAATATTTCTAACACACTTCAGCTTTCC AGGGCCAAGTGGAGTTAGATGGTGGCAAGAATTTGGACCTAAGCAACTATCCTTACATATTCATGGTAAATTGATTTTCA ATAATACAAAATGAAAGCATCGAAAGAGTTCATTCATTTCTGTGTAATGAAAAGTGTGATAATTGCATTATGTTCTTTGT TGCAGAGATGGAAAGAGCAGTACTTTGTGAATGTTGGAACTGACTGTGGGTTAACTATTGCTGGCTTTTACTATGTTTGT TTCTCTTGCAGCGATGGCTCTATCAGTGGGTTCTATTATGATCCTAATAGCAGGTGAGCTCTTCTTCTACCGATTCTTCA ACCTGCATTTCATTAGACCTATTAGTCATTTATATCTTTCGCATGTGATTCTCTGATCATTTTGTATTTTTTGAATGGAC TTTTAAGGGAACTTGTGATTGAGAATTTGACAATGAGATTATGATAACATACATACATGCATGGGCATAACCAATCATTA AGTTGTTGAATTTTACTGTCTCGTCAGTAGTTATAACTTTGCACTTACCTCTCTAAAATACATCCTTCATTTTAGATCTG TCAAATTCTTCTGTATGACCATTCATTCTGGTTTTTACATCTTTAGAAAGTTTTTTGACATAAAACTCGCTTTGCAGCCC CTTCCAGAAGCTTGAGTTGAAATCCACAAATGATGGAAGATCAGGTTTCAGTTTTTCATCATATGAGTTACAATAGATTG GGAGAAATGTAACATGTACCTTTCATCTAATTGAACTTCCTTTGAAGTCTATGAGTGAGAAATGTGGATAATTTAAGTGT ACTGTTGCCATATAGAGTGGGGAATGCATATCTTGTATTTCCCCCCTTTTCTTCAAGTTATGGTATGTCATGATATTTGA GGTGTCCCCGTATCTTTTGCAAGGGAGGTCATCTGAGGCATGACCTTTTTATATGAATTTACAGTTCAATTGTCTTATTG TCAAACATGTAACTTGTTAAATCCATGTTTTATTCACTAATAAGTTTTAAGAGTCATTCCCTCGCTTGGATATGAAAAGT TCTTATGCCTCTTGAATAGTTAAAAATTATATCTATTAGCAATC
CDS sequence (LotjaGi3g1v0230300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTAGAAAAATTCGGTTCCGCTACCTCCCTCCATCACGCCACAGGATCATGCCTGTCAGAGTATTGGAAAACGT CGCCGTTTCTCAAACAGTTCTCGGTCCAAATGCTAGGCGTGGTTCATTTCAATCTTGTAGTCTTCTACGTGTTGGGCAGG CCTTTTCTGGCACTCAGAATGTTTCAAGCCTACAAAAGGATGAAGCATGGAGAGTAAATGTCCGTATACAAGGATGTGAC CTAGAGCATGGTTATCTATGTGGCACCATGGAGGCTCTTAATGTTCCTATGGCAGACACGCCGGTAGTAACATTCTGGGA AGGGGAGATTGTTGATATCAAGAATTATACTTTCTTCACTGGCAAATGGGAGGCAGCACCAGAGGATGATATAAGGCACT GGACTAAGTTTCCATCCTTTTCTCCCATATTGGGCCAAGTGGAGTTAGATGGTGGCAAGAATTTGGACCTAAGCAACTAT CCTTACATATTCATGAGATGGAAAGAGCAGTACTTTGTGAATGTTGGAACTGACTGTGGGTTAACTATTGCTGGCTTTTA CTATGTTTGTTTCTCTTGCAGCGATGGCTCTATCAGTGGGTTCTATTATGATCCTAATAGCAGCCCCTTCCAGAAGCTTG AGTTGAAATCCACAAATGATGGAAGATCAGGTTTCAGTTTTTCATCATATGAGTTACAATAG
Protein sequence (LotjaGi3g1v0230300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSRKIRFRYLPPSRHRIMPVRVLENVAVSQTVLGPNARRGSFQSCSLLRVGQAFSGTQNVSSLQKDEAWRVNVRIQGCD LEHGYLCGTMEALNVPMADTPVVTFWEGEIVDIKNYTFFTGKWEAAPEDDIRHWTKFPSFSPILGQVELDGGKNLDLSNY PYIFMRWKEQYFVNVGTDCGLTIAGFYYVCFSCSDGSISGFYYDPNSSPFQKLELKSTNDGRSGFSFSSYELQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 233 | 198 | 1.7E-105 | – | |
| Pfam | 49 | 217 | 169 | 1.0E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0230300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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