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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0232600 |
| Transcript ID | LotjaGi3g1v0232600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding EF-hand family protein; TAIR: AT3G24750.2 hypothetical protein; Swiss-Prot: sp|Q28SY7|Y1258_JANSC UPF0753 protein Jann_1258; TrEMBL-Plants: tr|K7MG78|K7MG78_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0232600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:36693052..36695930) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAGGCAACAACCATTCCCCACTCACTCCCTTCATTCCCTTGTCTCTCCTTCTCCCTTAAATTAACACCAATTTTCTT CGTCTCATCTCACCAAAGGCCTCAAACGCTTGAGAATTGAAGAATATATCTTACCAGACAGCTTGTAAAGATATAAGAGC TGCATAGGACCTCTCTATTTGACTAACACAGTCATAAGAGAAAAGACCCTCATTCAAAAAATAGTATATATAAGTTGCAT AGAGCATCCACAGTAGACATGCAGGTATATATATGGTTATGTAATGATATGAAATTCTCATATTCAAACACATCATGACA CTAAGTACTTCCATATCTCATACATTTCCTTTTATCTTTTGCTTATTCACAATACATTATGTATTACATCTATCACTTTT ATAATTTTTTTATCCTTCTTATTTGGGATGTTTGCACCCTAATTAGTTCTCCAACAACCATTTTCCAATTCCATATGATG GTTGTAATCCGAAGCTGCATTATTATTTACATGAAGGCTGATAGCTCTTTTGTTGCACCATTAACAGATTCTTCAACGGC TCACTAAAGGGGTACATGAACAAGACAGAGAGATCTGGACCTTTAGTCCTTCCACCAATACAGTTACCAGAGGTAATTAA GAGCAACTCTTATTTATGCACTATTTAGCATTGTGGATCTCAACATCATTCAATTAGCATATGAACTGAACAATTTCAAT GCATAATATATATACCTTTTTTTATGACATTGTTTCAGATATAAACATACCTAAGCATCACAGAACAAGGAGAATAGTAT GGAGCAAACTTCGATTAAAGAAGTTGAAGCTGTTTACATTCATGTGCGGATCAAAAGACATTCCAAAGGCCTGCATTTGC AGGACCCCCGACTTATACGGATTAGGAAACTTGAGAAATACTAAAAGGACAGATTCTGCTGCTGCTAATGTAGGAAAGAA GGTTTTGCCCGTAACTGAAGCATCATTCTCTAGAACAACAGAAAGAAATGAGTTTGTCACAGCAGAAGCTAAGGATCAAG TTAAAGAGGATAAAAAGAAAGCAATTTCAAGAATGAAAGAGCTACTTGGTCTGGTTTCTGCTGCCAAAAAAGATAAAAGA GGAAAATTCAATGAACAAAAGGTAAACTTATTTTAACAACTTCAAAAGCCCTTCACTATTTTTCTATCCACGGAGAGAAG AGTGATTATACATTGACATATACACATTTCGCCAGACACCCTTAGTACATATGACAGCTGGCCGGGGTTTTTAACCTTCG CAACATGTTGTGGCTGTTAAAAACTACCACTAATTTGAATGTCCAAGTGGTGTCTGGTAAAATGGTATGTCTGCGAATCG TTTTCCTTGAGAGGATAGCACATTCACTCCACAAAGGGTAGATCATGTAAGATATATATTAAACAAGAAATGAAGTAAAA AAGAAGCCAATGATCAGAAGAGATTATAATAAAATTAGATGGTCACCAAATTTTTACCATGTTTTACAGTTTCAAAGACA AGGAAACATAAGGGCAACTCCAGAAGATTATCAACTTTGCAGTGAGTCACCCAAGATCGAATTCACATGGGATGAGGAAA TTCAGTCCATTACTTCTTCTGTCTACTCAGTTATCTCATCAATAGCTTCTTTGTCTAAGAGTGGACAAGCCCAGATTGCA CACTCGCCAATTCATATCTCTTGTAGGAAAGAAAACTGGATCACAACAGACTCTGAATGTAAGCCTTCTTGTGTCCCTCA AATTTTTTTACAATATTACTTTTTTGCCATCGTGTGCTTGAATTGAAGTCCTTATACATAAGGCCTTAAACTCATAAGCA GTTTGTGCATGCATATAAATATATACATAAACATTTTCTGGACTTTTGTCAAAAAAAAAAAATTCTCTGCACATTCAATG GGCATATGATTCATTGGTCATTTTAAACCGTCACAAAAAATAAATATTAAAAACCATCAATAAAATATATGCCAATTGAA TATTTATCAAAAAAGTGAATGTCTATTTATCATCATTACCTGTATATAATAGTTGGATTAAACAATCAAAAGTACAAAAT ATATTCAAATAATAATATTCAAAAAAATTCAATGAACCGTTGATTTATGTGGTACATGTTTGACTTTCATTATGCAATAA CTTGTGTTCGAATCTTTTGAATGGAAAAAAAAAAACATCCGCTAGCAAAGCTATTCCCATTAGAATTTAGATATTTCCGG CTCAAACATAATTACCTTCTAATTCTAATATGTATTACACCAAAATGAAATAATAATCAAAATCAAAATTCAAGTTGAAC TTGTTTAAATATTATAATCTTCCGTTTTTTGATTGACTATGTTTCCGAGAACTATTCTTAAGCCTTTTACTAATATAAGT ACTTTGACTAACTCTTTCTTTATCATACTTTTGGTTGGATCCGCAGTTGTGGTGTTGGAACTAAAGACGTGTGTCTAAGG AAGTTGGCACTGTATCATTTCATGGATGGTGAATCGTGTAGCAGACAGTCCAGTTCACTAGTTAATGCTCAATGGGTTTT GTGCATACATTTTGTATTGCAGAGACGGGACAGCTAGAGAAATAAATGTATAGAATTAGATCATGGCCAGGCTTATTTTC TCTTGTGTGCATTCTCTTTTTAGTTTATACATAGATGACAATTGAGATCTATCTAGGACCTTATTTAAATTACCAATTAC TCCATACCATATGTAACTTATAGGGGCAATGCCTCATGTAAAATCTCTTGTAATCCTTCAAAAGTCCATAACCGATGCTT TTCCCTAACAGTCATACCACCAAATCCAGTTAATGACTCTGTCCACGCATTGCAGAGCTCATTCATAGCCTCCTTCTTC
CDS sequence (LotjaGi3g1v0232600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTCTTCAACGGCTCACTAAAGGGGTACATGAACAAGACAGAGAGATCTGGACCTTTAGTCCTTCCACCAATAC AGTTACCAGAGATATAAACATACCTAAGCATCACAGAACAAGGAGAATAGTATGGAGCAAACTTCGATTAAAGAAGTTGA AGCTGTTTACATTCATGTGCGGATCAAAAGACATTCCAAAGGCCTGCATTTGCAGGACCCCCGACTTATACGGATTAGGA AACTTGAGAAATACTAAAAGGACAGATTCTGCTGCTGCTAATGTAGGAAAGAAGGTTTTGCCCGTAACTGAAGCATCATT CTCTAGAACAACAGAAAGAAATGAGTTTGTCACAGCAGAAGCTAAGGATCAAGTTAAAGAGGATAAAAAGAAAGCAATTT CAAGAATGAAAGAGCTACTTGGTCTGGTTTCTGCTGCCAAAAAAGATAAAAGAGGAAAATTCAATGAACAAAAGTTTCAA AGACAAGGAAACATAAGGGCAACTCCAGAAGATTATCAACTTTGCAGTGAGTCACCCAAGATCGAATTCACATGGGATGA GGAAATTCAGTCCATTACTTCTTCTGTCTACTCAGTTATCTCATCAATAGCTTCTTTGTCTAAGAGTGGACAAGCCCAGA TTGCACACTCGCCAATTCATATCTCTTGTAGGAAAGAAAACTGGATCACAACAGACTCTGAATTTGTGGTGTTGGAACTA AAGACGTGTGTCTAA
Protein sequence (LotjaGi3g1v0232600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQILQRLTKGVHEQDREIWTFSPSTNTVTRDINIPKHHRTRRIVWSKLRLKKLKLFTFMCGSKDIPKACICRTPDLYGLG NLRNTKRTDSAAANVGKKVLPVTEASFSRTTERNEFVTAEAKDQVKEDKKKAISRMKELLGLVSAAKKDKRGKFNEQKFQ RQGNIRATPEDYQLCSESPKIEFTWDEEIQSITSSVYSVISSIASLSKSGQAQIAHSPIHISCRKENWITTDSEFVVLEL KTCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 240 | 240 | 3.1E-54 | – | |
| PANTHER | 1 | 240 | 240 | 3.1E-54 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0232600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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