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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0234900 |
| Transcript ID | LotjaGi3g1v0234900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosynthetic NDH subcomplex L 3; TAIR: AT3G01440.1 PsbQ-like 1; Swiss-Prot: sp|Q9SGH4|PNSL3_ARATH Photosynthetic NDH subunit of lumenal location 3, chloroplastic; TrEMBL-Plants: tr|I3SQW5|I3SQW5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0234900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:37228002..37229480) extracted from Lotus japonicus Gifu genome v1.2.
ACAGTTCACAAAGGATATGACATGAATATCATTTCCTAATTTTGATGAATCATCTTTCTTTTTCAAATCCCACTCATTAT TATATGAGTTCCTTCACCACCATGGCTCCTCTGACAAACTTGCATGGAGTCTCCAAAAACTTAACCCCCATTACATGCCT TCCAAATGTGCACAGGACCCTTAGGAGAGGACATGTAGTTGGATTTCTTGGAAGAAAATCACAGGAATTTTCAGAATGTT CAGTTCAGTCTACAAGAAGAGCAGCAGCAATAAGCTTTGCCACTCTACTCCTTACAGGACAATTCAAGGACAATGTTTCA TTAGCTGATAATGGCTTCTGGATTGATGGACCTCTTCCAGAACCAATTGTCATCAACAGTAAGATTTCTAGTGACTAATA ATGTGTTTGCATCGTCCTATCTTTCATCAGAATCAATTCTAAAATCGAGAATGGAATCACAAAGTTTTTTCTCAGAATTC AATTCTGAAGCCAGAATCAGTTATAGGAAGGTTTTGAAACATGTACTAAATTCAAAAAAAATAAGAAAACCTGGTGGTAT AAAGCTCCCGAGGGGCCGAACCCACTTTGTTGATCTAAGTATGTAGTCTTACCTTGCATTTTTTCAAAAGACTGATTCTA CTGCTCAAACATGTGACCGCAAAGTCACATAGCAGTATATGTAGTTCTTGCATAAACACAAGCATCAGTGGCTAATAAGA TGAATACAAATATGGTTTCTTTACTCTCATATTTGATTGATATTTCCCTGGTCACTTGGACCAATTAAGAATGGTATTTA TTTAATCATTTTTATGTGAATACTTATTATTTGGTTAGAGATTGCAAATGAGAAAACGGGGACTCGTTCTTTTCTCAAAA AGAGACTCTACATGGCAAATATTGGAGTCAAAGGAAGTGTGTACAGGATCAAGAAATATGCCTTTGATCTTCTGGCAATG GCAGATTTGGTTAAAGAAGACACCCTCAACTATGTGAGGAGGTACCTGAGGCTCAAGTCCACATTCATGTACCATGATTT TGACAAGGTTATCTCTGCCACTCCAGTTGATGAGAAGCAGCAACTAACTGACATGGCTAATAAATTGTTTGATAATTTTG AAAAGGTAGATGCTCTTTCTTTTCTTGCCCTCAAAATGGAGTATGTTATGAATAAATGATGGATTAACAAATTGTGTTTC TGATGCAATGACAGCTTGAAGAAGCTTCAAGGAAGAAAAATTTGTCTGAAACAAAATCATGCTATCAGGAAAGTGAGATT TTGCTTAAAGAGGTCATGGACCGAATGACTGCAATGTATAAAACAATTTGACATGATTTTAATCAAGCTGTGTTACTCTT GCTCTTATCAAAAACAATTTTATGTTTTTGATTTACTATAGAGAAATACTATGACTAGATGAATTTAAGTGCAGAATTGC AAGTGGAGGATAGTGTCCTTAACCACAGTGAACACTAAA
CDS sequence (LotjaGi3g1v0234900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCATCTTTCTTTTTCAAATCCCACTCATTATTATATGAGTTCCTTCACCACCATGGCTCCTCTGACAAACTTGCA TGGAGTCTCCAAAAACTTAACCCCCATTACATGCCTTCCAAATGTGCACAGGACCCTTAGGAGAGGACATGTAGTTGGAT TTCTTGGAAGAAAATCACAGGAATTTTCAGAATGTTCAGTTCAGTCTACAAGAAGAGCAGCAGCAATAAGCTTTGCCACT CTACTCCTTACAGGACAATTCAAGGACAATGTTTCATTAGCTGATAATGGCTTCTGGATTGATGGACCTCTTCCAGAACC AATTGTCATCAACAAGATTGCAAATGAGAAAACGGGGACTCGTTCTTTTCTCAAAAAGAGACTCTACATGGCAAATATTG GAGTCAAAGGAAGTGTGTACAGGATCAAGAAATATGCCTTTGATCTTCTGGCAATGGCAGATTTGGTTAAAGAAGACACC CTCAACTATGTGAGGAGGTACCTGAGGCTCAAGTCCACATTCATGTACCATGATTTTGACAAGGTTATCTCTGCCACTCC AGTTGATGAGAAGCAGCAACTAACTGACATGGCTAATAAATTGTTTGATAATTTTGAAAAGGTAGATGCTCTTTCTTTTC TTGCCCTCAAAATGGAGTATGTTATGAATAAATGA
Protein sequence (LotjaGi3g1v0234900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHLSFSNPTHYYMSSFTTMAPLTNLHGVSKNLTPITCLPNVHRTLRRGHVVGFLGRKSQEFSECSVQSTRRAAAISFAT LLLTGQFKDNVSLADNGFWIDGPLPEPIVINKIANEKTGTRSFLKKRLYMANIGVKGSVYRIKKYAFDLLAMADLVKEDT LNYVRRYLRLKSTFMYHDFDKVISATPVDEKQQLTDMANKLFDNFEKVDALSFLALKMEYVMNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 210 | 191 | 3.5E-74 | – | |
| PANTHER | 20 | 210 | 191 | 3.5E-74 | ||
| Pfam | 46 | 210 | 165 | 9.9E-42 | ||
| Gene3D | 101 | 212 | 112 | 4.1E-33 | ||
| SUPERFAMILY | 129 | 210 | 82 | 6.15E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Cellular component | Photosystem II oxygen evolving complex | A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ). | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Extrinsic component of membrane | The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region. |
Expression pattern of LotjaGi3g1v0234900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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