Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0244300
Transcript ID	LotjaGi3g1v0244300.2
Related isoforms 1	LotjaGi3g1v0244300.1
Lotus japonicus genome version	Gifu v1.2
Description	Vascular plant one zinc finger transcription factor protein; TAIR: AT1G28520.1 vascular plant one zinc finger protein; Swiss-Prot: sp\|Q9SGQ0\|VOZ1_ARATH Transcription factor VOZ1; TrEMBL-Plants: tr\|A0A151SVF4\|A0A151SVF4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0244300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:39896497..39900264) extracted from Lotus japonicus Gifu genome v1.2.

CGTCTAGTTCAAGCTTCAAACTTGAGCAATCAAATCCCTGTATATCTCTGCAATTCCACTAGGTCTCGGCGATGAGGGTT CGCTTTTCTCGTCTGAGTTGATCTCAAACAGAACCGAATTCGCCCCTGTTAGAGTTCCGGGTTTGACTTGTCGTTTTGCA AGCCATTGCCTCCTTTCTCCAATTTGAGACCGAAGTTAAATTACCCATCTCCTGATTCTCTTGTAAATTCAACTTTTATA CCGAAAGTTCCAAACTTGGTCAACTGGGGTTACTGGGGTAGTGTCATCTATTGGGTCCATCAATGTTGCAATTTGTTTGC TTTTTAGTATTTTTTTTATAATTATTATGATTATTACTCTGCAATGTGGATTGTGCTTTGTTTTGTTTTAGAGTTTAATT GTTGATTGTTGTTGATCACCATATTAAAATAATTTTCTGTTACATGAGTTTATTTTATTTTATTTTATTTTTAATTTTGG GAACTTGTTTTTGACATGGTGCTGTTTGTGTTCTTTTGGTGTAAATTTTGCCTCAAGGAAGGTATGATGGGAAAGAATTC CAAGGGAAAATGTGGATCGCCTTCTCGTCAATCCATGAAAGAGAAGGAGAAACACTTGGTGGATAAGATACAAGGGATTT TCACCAATCTTCAGTATGCAAGAAAGGAGAACAGGGCTAATGACATTGTGATCTGTGAGGAGCAGATGCATCAGTTTCTG CGGGAGTGGAAGGCGGAACTGGAGTCTCCAGCCACCTCCTTAGCTGTATGTCGTTGAATTCTTAGACATTGCTGATGAAT ATCTGTGCATGTTTTCTTTTTTTCTTTTCTACCTCGAGAAGTATTGGTACTTTATTAATATGTATGCGCTTGCATTATAT AGAATGGAAGCTTTGATTCGTTTACCGGGGAACTAGCCCAACTATTGCAAGAAATTGAGGAGCAAGATGATGCAACAAGT CCATTAACAAAACCTGTGCCATTGAAGACTGAGCCCCATCCAAATAACGTTAGTGATAGCAGTTATCCATTTTTTGAGGA GGTAGGTTTCGTGTGACTAGTTCTTGTGATGTGAGTCACTCCATTTTATGTGTGTGCTAACAGCCTTTTTTCTGGGTCTT AATATGAAGCAAAATTTTGCTTGTAATATTTCTTCAGTTATGCTTCTGGGTTGTATGGTTTTTGTACAGGTTCTTTCTTC CAGTTAAAGATGAAACATATGGTGTACAGTATATGTGTTGTTAATCTATTTCAGTTTTTGCTTAATGTTACAACCATATG GAAAATTTTGCATGGTCATGTGAAGCTTTTCTTTTCTGAGTATGAACTTTAGAGGGATAAAAATCAAAGGATCATATATT TTATCTCTTATGGACTTAGCTGTATCACCAAAACAGGATATGGATAGTTTGAGTGCTTTTGTCTAAAAATTGACTTAATG TAGTTTGGGTTCTTTTATTTTACTTATTCTAATGAATTTGTTGACTCTCAAATCAAACAGTTGCTGTTTGTGTTCATCAA CTTACCTTTTCTGTGCACATCTGATGGCTTGAATTGTACTAGTTTTTCTTTTCTTGGTGCTAGATAGTATACAATTAAAC TTCACATAGTGTTTAAGCTGTAGAATGTAAGGGAAGTCTACTGATGCCTTTGTGGTGAGTGGTCTTTTAGTTTACTCAGG TAAACCTGTTGGCTAAGATATTTTTAACCTTTTTTTGTTTACATGTAAATTGAATGAAAGCCCAATATGCCCAAGTACTC CAGTTTCTTGATGTATGTTGTTGAAAGTTTTAGGAAGACCATGCAGCCTTGTGCTAATTTTTTGGTCCATAATGATTTCA ACTTTTAAAATTCATCAGGTGAGGGAGGATTACCAATATGGAACTCTTAGAATTTTTTTTCCTAACATGGACTGATTAAC TACTCAACTGGTTAACAATTTCAACTTTCAACTTAGTTGCTAGCTGTTCCTTAAACAGATTTTTTTTAAATCTTTTTACA ATGTTTACTTTGTTTTTTTTTTTGTTTCCTGTAAATGATTGTAAATAAAATAAAACTATGCAGTGTATAAAGAAATAGAA TATATATGAGCTGAGTGTTCTAGCCTGTTCAATCATATTTTATGCTTACTGGATGCTTTTTTTTTAAGAGATACTAATAT GCGCTTGATATCTTGCAGAAGTGTTTTAATGATAACCAACCACTATATCATACTTTTGAAGGCTCTTCTTCAACTCTCTA CAACAATGCCTTTAATAACTCAGATATAATTCAGTTGGACTATCATCAACTCAGCTTGAATCACAATTTGGATCACAACA CAGTAGGCCACAACTCGGATTTAATTGGTCAATTTGATCTAAGCCAGGAACTCAGGCACCACACAGAAATGAAAAACTCT GAGTCAACTCAAATTATTTTCGATGAAGGCTTTGATTGTAGCCAATTTTTCGGAGATGATGATCCTGTGCAGTGTGGAGA CAATATTATACCTAACATTCTTCCAAGTATCCGCCCTCCACCTTCTGCATTTTTAGCTCCAAAATGTGCACTATGGGATT GTTTCAGACCTGCTCAAAGGTTAGAATGGTGCCAGGACTACTGTAGCAGTCACCATGAGCTTGTGGCAAATAAAGAGGGC CTTCCTGGCACGACTCCGATCGTGCGACCTCGAGGCATTGACATCAAAGATGGTCCTTTGTTTGCTTCTGTTCTAGCAAA GACACAGGGAAAGGAAGTGGGCATCCCTAAATGTGAAGGTGCTGCTTCCACTAAATCCCCCTGGAATGCTCCTGGTGAGT ATGCAAATTTTTTTTAATGTTCCTTGTATTGCTATTTAATAATGTTCATTACAGTGTGCAAAATCTAGCAACCTGCTTGT CTATCAATATTGTAGAAGAAGTTACTCCATGCTTATTACTTTTCATCTTCATTGTTTATGTTTGAATACATAATTTTATT CTGTTGTTGCAGAGTTCTTTGATCTTTCTCTTCTTGAGGGTGAAACTGTTAGGGAGTGGCTCTTCTTTGACAAACCAAGA AGGGCATTTGAAAGTGGAAATAGAAAGCAGAGATCGCTCCCAGATTACAGTGGGCGTGGTTGGCATGAGTCAAGGAAGCA GGTGATGAAGGAACATGGGGGACAAAAGAGGTCCTACTACATGGATCCCCAGCCTCTTAGTTATCTCGAGTGGCATTTGT TCGAGTACGAAATCAATAACCATGATGGCTGCGCATTATACAGACTAGAGCTAAAGCTCGTGGATAAAAAGAAAAGTCCT AAAGGAAAAGTGACGAGGGAATCTCTTACTGATTTACAGAACAAGATGGGGAAACTAACTGCCGCCGTTTCATCATCTGA TGATGCACTCCCTGACAAGGGAAACACAACACCCAAGTCTAAGAATGTTGGGTGTCCTGAAAATTAAGCAAATTTCGATG TGGTGATTGCGCCAAATGACTGAACAAAGTGTACATATTTGGGGATGGATCACTGCATGTAGAAATTTCTAACAGTCCCT GAACAAGGTAACAGCTGTTTCTTGTCGTAGAAGGTGTTCAAACCCTAGTCTCCTGAGTTTATCATTTTTCTGCGTTTGGA TATTGGCATTATGTAAATTCAGTGCGGCTTTTGTTTAAAGGTTTAAAAAGTTTTATAGGATCAGTTTTTGGTTCAATTCA TCCATTCAATTTGATTTACAATATTTTCCCCGCCGATAGCTTATAAATTCAACAGGATTAAGAGCACTGAGTGACAAATC TTATGAAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0244300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGGGAAAGAATTCCAAGGGAAAATGTGGATCGCCTTCTCGTCAATCCATGAAAGAGAAGGAGAAACACTTGGTGGA TAAGATACAAGGGATTTTCACCAATCTTCAGTATGCAAGAAAGGAGAACAGGGCTAATGACATTGTGATCTGTGAGGAGC AGATGCATCAGTTTCTGCGGGAGTGGAAGGCGGAACTGGAGTCTCCAGCCACCTCCTTAGCTAATGGAAGCTTTGATTCG TTTACCGGGGAACTAGCCCAACTATTGCAAGAAATTGAGGAGCAAGATGATGCAACAAGTCCATTAACAAAACCTGTGCC ATTGAAGACTGAGCCCCATCCAAATAACGTTAGTGATAGCAGTTATCCATTTTTTGAGGAGAAGTGTTTTAATGATAACC AACCACTATATCATACTTTTGAAGGCTCTTCTTCAACTCTCTACAACAATGCCTTTAATAACTCAGATATAATTCAGTTG GACTATCATCAACTCAGCTTGAATCACAATTTGGATCACAACACAGTAGGCCACAACTCGGATTTAATTGGTCAATTTGA TCTAAGCCAGGAACTCAGGCACCACACAGAAATGAAAAACTCTGAGTCAACTCAAATTATTTTCGATGAAGGCTTTGATT GTAGCCAATTTTTCGGAGATGATGATCCTGTGCAGTGTGGAGACAATATTATACCTAACATTCTTCCAAGTATCCGCCCT CCACCTTCTGCATTTTTAGCTCCAAAATGTGCACTATGGGATTGTTTCAGACCTGCTCAAAGGTTAGAATGGTGCCAGGA CTACTGTAGCAGTCACCATGAGCTTGTGGCAAATAAAGAGGGCCTTCCTGGCACGACTCCGATCGTGCGACCTCGAGGCA TTGACATCAAAGATGGTCCTTTGTTTGCTTCTGTTCTAGCAAAGACACAGGGAAAGGAAGTGGGCATCCCTAAATGTGAA GGTGCTGCTTCCACTAAATCCCCCTGGAATGCTCCTGAGTTCTTTGATCTTTCTCTTCTTGAGGGTGAAACTGTTAGGGA GTGGCTCTTCTTTGACAAACCAAGAAGGGCATTTGAAAGTGGAAATAGAAAGCAGAGATCGCTCCCAGATTACAGTGGGC GTGGTTGGCATGAGTCAAGGAAGCAGGTGATGAAGGAACATGGGGGACAAAAGAGGTCCTACTACATGGATCCCCAGCCT CTTAGTTATCTCGAGTGGCATTTGTTCGAGTACGAAATCAATAACCATGATGGCTGCGCATTATACAGACTAGAGCTAAA GCTCGTGGATAAAAAGAAAAGTCCTAAAGGAAAAGTGACGAGGGAATCTCTTACTGATTTACAGAACAAGATGGGGAAAC TAACTGCCGCCGTTTCATCATCTGATGATGCACTCCCTGACAAGGGAAACACAACACCCAAGTCTAAGAATGTTGGGTGT CCTGAAAATTAA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0244300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMGKNSKGKCGSPSRQSMKEKEKHLVDKIQGIFTNLQYARKENRANDIVICEEQMHQFLREWKAELESPATSLANGSFDS FTGELAQLLQEIEEQDDATSPLTKPVPLKTEPHPNNVSDSSYPFFEEKCFNDNQPLYHTFEGSSSTLYNNAFNNSDIIQL DYHQLSLNHNLDHNTVGHNSDLIGQFDLSQELRHHTEMKNSESTQIIFDEGFDCSQFFGDDDPVQCGDNIIPNILPSIRP PPSAFLAPKCALWDCFRPAQRLEWCQDYCSSHHELVANKEGLPGTTPIVRPRGIDIKDGPLFASVLAKTQGKEVGIPKCE GAASTKSPWNAPEFFDLSLLEGETVREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEHGGQKRSYYMDPQP LSYLEWHLFEYEINNHDGCALYRLELKLVDKKKSPKGKVTRESLTDLQNKMGKLTAAVSSSDDALPDKGNTTPKSKNVGC PEN

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	-	–
PANTHER	PTHR33873:SF4 View details on PTHR33873:SF4 Search for proteins/transripts with this domain View external data on PTHR33873:SF4	2	477	476	2.2E-213	–
PANTHER	PTHR33873 View details on PTHR33873 Search for proteins/transripts with this domain View external data on PTHR33873	2	477	476	2.2E-213	IPR039277 Show description in modal box View details on IPR039277 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	94	115	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	361	391	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	370	391	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	451	483	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	464	483	20	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0006355 View details of GO:0006355 AmiGO InterPro QuickGO	Biological process	Regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0010468 View details of GO:1903506 View details of GO:2000112 Regulates View details of GO:0006351
GO:0048578 View details of GO:0048578 AmiGO InterPro QuickGO	Biological process	Positive regulation of long-day photoperiodism, flowering	Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.	Subterm of View details of GO:0048582 View details of GO:0048584 View details of GO:0048586 View details of GO:2000243 Positively regulates View details of GO:0048574

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0244300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0244300.2