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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0256100 |
Transcript ID | LotjaGi3g1v0256100.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|V7BXR9|V7BXR9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0256100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43947906..43950711) extracted from Lotus japonicus Gifu genome v1.2.
ATTCGTTTTGTCATTTTCTCCACTGATGTAATTAAAAAGCTACCAATATGTCCCTTTTGAAATTTTAATACTCTACCTCT GTCCAAGAAAAATGAACCAACTGTAAAATGAGATGATACTAATCAAATATGCATTTGCAACTGGGACCCATTAATCTTTT AAAATGCAAGTAAAATCCAAGAGATGTTGGGTGTGTATAAGTATTGTACTCATCTGAATGCTTTCAAAATAACACATTCT CTCATCCACTCTAGCGTTGTGAGACATTTATTTTTCAGGCATGTGATTACGTATTCATTCACTTTATAATATGTAGTATA TTTTACACTCATATCTAATGGTGCATTCATGCTTACTGAACACTAACACTGTCTGTCTAAACTTGTTAACCAGGTGTTTC TTATTCATGGATTCAGATGCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTGCATGAAAGCATTCTGGGTCA CATACTCTCTTTCCTTCCAACTATTGAATCAGTTCAGACTAGTGTGTTATCAAGAAGGTGGATTGATGCTTGGACATCAA TAATAAATCTTAAGTTTGATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGCAGTTTATGTGTTTTGTGAAC AGAGTGCTTCTTCACCTTGCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCTTTTAATCATGACTCATCTCA GGTGAATGCATGGATCTCTTCTGTTTTACATAGAAGACTCCAGAAGCTTCACATTCAGTGTTATGATAAAGTTCTCCTTT CTTCCCATTCCCTTTTTAGCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCACTCTCAATGTTCCCATCTCT GCTTTTCTCCCAAACCTTCAAAGTTTTAGCATTTCTGGGGTGAATCTAGTGAGTGATTCCCCTACTGATTCCAAAGACAT AACTCTCAGCTTCCCAGTTCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAATGCAGGACATTAGTATTCAAG CGCCTCTACTTGAAAAGTTTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTAAACCTGCCATCAAGGTTTTT AGTTCTAAACTAACCGATTTCTCGTACGAGGGTGATCTTGAACAAGAGGTCATTCTGTTTCATCCATCATCGATTCGCAG TGCTTCTCTTGTGATTGTTGTTGATGAAGATAGAAAGGACAGATCATCAATGGAAAAGTTAGTGTTTCAAGCACAAATGT TTCTCAGACAAATGCATCAGGTGGAACAACTCAAATTGTTGTTTTACAAGGTATGCTTGGGTTTCATGAAATATGAATGA CAATTATGTAGATATTCAAAACGGGATAGTAGTGTTACCTGTTTTTGCATAGGAAAATTTTAATTAAACATTCCTTTAAA CTGGTTTTTCATTTGAAAAGTTTATTCTTTTCTCTTGCTTTTCTTTTAAATTTCTCTTAAACCAAAAAACTTTAGAATCT TCTCACGTCCTACTCTCTTTCTTTCTATTTACTTTCTTTTCTCTCACTTTTCTTCCATTCTCCCTACCAAACATATAAAA TTTTCACTGTCTTATTTTTTAACCTGGGACTCCCTTAAGAGGAAAAAAAAAAACCTGGGACCATAAAAAACTCAGCTATT TTATTTATAATAACTATAAATATAAGTTATCATGTGAGATACTTTTCAAATATGATTTAATTCAGTGCATAAAAATGAAA CTCTATAGTTTTCTTATTACAAAGGTTTAATTATATTACGTACCTAGACAATTGAACCTCATTTCCTGATATTTTACGAG TTAGGACGTATCTATTTTCATAATGTGAATGTGAATATTTTGTTTTTTGGTTGCCATACAGGTCTTAATCCATGCTAAAG ATATCTTTACTCATTTGCCTGCCTTTGGAAAGTTGACTTATCTGCAACTAAACGAGGTTACCGGTGAAGCTCTGTTTCAC TTACTCCACCATTCCCCATTTCTTAGCACTCTTGATTTGCTTAACGTGAGTTTTCTCTATCTTTACATAACAAAAATTTA AAGTGCTTAAGTTTATGTGTTAATTTATTAGCTATAATACATCATGATTGACAAAGGACACACTGAAAAAAATTATCAGG GAGTACCTGACATAAATGAAGATGTCTTGAAGGCTCCATCAGTACCTGTTTTCTTTTTGTCAAGCTTCAAAGTATTTCAG TTTAATGGATTTAATGTGAAAGAGCATGAGCTTTCTCTGGTGAAATTCGTGTTAGCAAATGCAGCAGTCTTGGAGCAGGT GAAAATATGTACAGCTTTTTGGCTGCGATATTCAGATATTAACATGGAGAAAGTTAAGCAGCAGATACTCTCTTTACCTA AACGTTCCAGCTTTTCCATGATTGAATTTTGTAATGCCAAAGGTTCCTGAAGATTTCATAACATCCAAAGGATATACAGC TTTTATTGGCTGCTTTAATGCATTACAACAATGTAAACTAGAAGTACACTAGTATGATATCCTTTTTCTTTTTTCGTGTT AATTTTGATTCAATGAATCTGTTGGTTATAGAAAATCTAATATCATATCAAAAAGATCTATTGCTTCACTAGCCTTTTGA TCCTCATGTAAGAATATGGAATAATTGGTGAGTTTCTCATTAACAGGAATACAATATATATACAAAACAGAGTGAGGTGA AGTCAAACTATTGCCTAATAGAGCTAGTTTAATTGGAGGAAGAATAGTTAATACATCAACAATGATATATACACACCTCC TTTTTT
CDS sequence (LotjaGi3g1v0256100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCATTCATGCTTACTGAACACTAACACTGTCTGTCTAAACTTGTTAACCAGGTGTTTCTTATTCATGGATTCAGA TGCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTGCATGAAAGCATTCTGGGTCACATACTCTCTTTCCTTC CAACTATTGAATCAGTTCAGACTAGTGTGTTATCAAGAAGGTGGATTGATGCTTGGACATCAATAATAAATCTTAAGTTT GATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGCAGTTTATGTGTTTTGTGAACAGAGTGCTTCTTCACCT TGCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCTTTTAATCATGACTCATCTCAGGTGAATGCATGGATCT CTTCTGTTTTACATAGAAGACTCCAGAAGCTTCACATTCAGTGTTATGATAAAGTTCTCCTTTCTTCCCATTCCCTTTTT AGCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCACTCTCAATGTTCCCATCTCTGCTTTTCTCCCAAACCT TCAAAGTTTTAGCATTTCTGGGGTGAATCTAGTGAGTGATTCCCCTACTGATTCCAAAGACATAACTCTCAGCTTCCCAG TTCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAATGCAGGACATTAGTATTCAAGCGCCTCTACTTGAAAAG TTTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTAAACCTGCCATCAAGGTTTTTAGTTCTAAACTAACCGA TTTCTCGTACGAGGGTGATCTTGAACAAGAGGTCATTCTGTTTCATCCATCATCGATTCGCAGTGCTTCTCTTGTGATTG TTGTTGATGAAGATAGAAAGGACAGATCATCAATGGAAAAGTTAGTGTTTCAAGCACAAATGTTTCTCAGACAAATGCAT CAGGTGGAACAACTCAAATTGTTGTTTTACAAGGTCTTAATCCATGCTAAAGATATCTTTACTCATTTGCCTGCCTTTGG AAAGTTGACTTATCTGCAACTAAACGAGGTTACCGGTGAAGCTCTGTTTCACTTACTCCACCATTCCCCATTTCTTAGCA CTCTTGATTTGCTTAACGGAGTACCTGACATAAATGAAGATGTCTTGAAGGCTCCATCAGTACCTGTTTTCTTTTTGTCA AGCTTCAAAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTCTCTGGTGAAATTCGTGTTAGCAAATGC AGCAGTCTTGGAGCAGGTGAAAATATGTACAGCTTTTTGGCTGCGATATTCAGATATTAACATGGAGAAAGTTAAGCAGC AGATACTCTCTTTACCTAAACGTTCCAGCTTTTCCATGATTGAATTTTGTAATGCCAAAGGTTCCTGA
Protein sequence (LotjaGi3g1v0256100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHSCLLNTNTVCLNLLTRCFLFMDSDAATAVGEIDMISNLHESILGHILSFLPTIESVQTSVLSRRWIDAWTSIINLKF DDSLLFHGKKMQREQFMCFVNRVLLHLANSTIQSFSLCLTSFNHDSSQVNAWISSVLHRRLQKLHIQCYDKVLLSSHSLF SCNSLVELKLQMKCTLNVPISAFLPNLQSFSISGVNLVSDSPTDSKDITLSFPVLKVFEARGCEWLTMQDISIQAPLLEK FSIAIWNTHSNGKCKPAIKVFSSKLTDFSYEGDLEQEVILFHPSSIRSASLVIVVDEDRKDRSSMEKLVFQAQMFLRQMH QVEQLKLLFYKVLIHAKDIFTHLPAFGKLTYLQLNEVTGEALFHLLHHSPFLSTLDLLNGVPDINEDVLKAPSVPVFFLS SFKVFQFNGFNVKEHELSLVKFVLANAAVLEQVKICTAFWLRYSDINMEKVKQQILSLPKRSSFSMIEFCNAKGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SUPERFAMILY | 28 | 81 | 54 | 2.35E-7 | ||
PANTHER | 29 | 468 | 440 | 9.5E-168 | – | |
PANTHER | 29 | 468 | 440 | 9.5E-168 | – | |
Gene3D | 37 | 271 | 235 | 4.8E-14 | ||
SUPERFAMILY | 115 | 379 | 265 | 3.73E-5 | – | |
Pfam | 393 | 435 | 43 | 8.6E-9 | ||
SMART | 396 | 470 | 75 | 1.5E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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