Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256100 |
| Transcript ID | LotjaGi3g1v0256100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|A0A072VA50|A0A072VA50_MEDTR F-box/RNI/FBD-like domain protein; Found in the gene: LotjaGi3g1v0256100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:43948046..43950527) extracted from Lotus japonicus Gifu genome v1.2.
CTGGGACCCATTAATCTTTTAAAATGCAAGTAAAATCCAAGAGATGTTGGGTGTGTATAAGTATTGTACTCATCTGAATG CTTTCAAAATAACACATTCTCTCATCCACTCTAGCGTTGTGAGACATTTATTTTTCAGGCATGTGATTACGTATTCATTC ACTTTATAATATGTAGTATATTTTACACTCATATCTAATGGTGCATTCATGCTTACTGAACACTAACACTGTCTGTCTAA ACTTGTTAACCAGGTGTTTCTTATTCATGGATTCAGATGCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTG CATGAAAGCATTCTGGGTCACATACTCTCTTTCCTTCCAACTATTGAATCAGTTCAGACTAGTGTGTTATCAAGAAGGTG GATTGATGCTTGGACATCAATAATAAATCTTAAGTTTGATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGC AGTTTATGTGTTTTGTGAACAGAGTGCTTCTTCACCTTGCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCT TTTAATCATGACTCATCTCAGGTGAATGCATGGATCTCTTCTGTTTTACATAGAAGACTCCAGAAGCTTCACATTCAGTG TTATGATAAAGTTCTCCTTTCTTCCCATTCCCTTTTTAGCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCA CTCTCAATGTTCCCATCTCTGCTTTTCTCCCAAACCTTCAAAGTTTTAGCATTTCTGGGGTGAATCTAGTGAGTGATTCC CCTACTGATTCCAAAGACATAACTCTCAGCTTCCCAGTTCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAAT GCAGGACATTAGTATTCAAGCGCCTCTACTTGAAAAGTTTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTA AACCTGCCATCAAGGTTTTTAGTTCTAAACTAACCGATTTCTCGTACGAGGGTGATCTTGAACAAGAGGTCATTCTGTTT CATCCATCATCGATTCGCAGTGCTTCTCTTGTGATTGTTGTTGATGAAGATAGAAAGGACAGATCATCAATGGAAAAGTT AGTGTTTCAAGCACAAATGTTTCTCAGACAAATGCATCAGGTGGAACAACTCAAATTGTTGTTTTACAAGGTATGCTTGG GTTTCATGAAATATGAATGACAATTATGTAGATATTCAAAACGGGATAGTAGTGTTACCTGTTTTTGCATAGGAAAATTT TAATTAAACATTCCTTTAAACTGGTTTTTCATTTGAAAAGTTTATTCTTTTCTCTTGCTTTTCTTTTAAATTTCTCTTAA ACCAAAAAACTTTAGAATCTTCTCACGTCCTACTCTCTTTCTTTCTATTTACTTTCTTTTCTCTCACTTTTCTTCCATTC TCCCTACCAAACATATAAAATTTTCACTGTCTTATTTTTTAACCTGGGACTCCCTTAAGAGGAAAAAAAAAAACCTGGGA CCATAAAAAACTCAGCTATTTTATTTATAATAACTATAAATATAAGTTATCATGTGAGATACTTTTCAAATATGATTTAA TTCAGTGCATAAAAATGAAACTCTATAGTTTTCTTATTACAAAGGTTTAATTATATTACGTACCTAGACAATTGAACCTC ATTTCCTGATATTTTACGAGTTAGGACGTATCTATTTTCATAATGTGAATGTGAATATTTTGTTTTTTGGTTGCCATACA GGTCTTAATCCATGCTAAAGATATCTTTACTCATTTGCCTGCCTTTGGAAAGTTGACTTATCTGCAACTAAACGAGGTTA CCGGTGAAGCTCTGTTTCACTTACTCCACCATTCCCCATTTCTTAGCACTCTTGATTTGCTTAACGTGAGTTTTCTCTAT CTTTACATAACAAAAATTTAAAGTGCTTAAGTTTATGTGTTAATTTATTAGCTATAATACATCATGATTGACAAAGGACA CACTGAAAAAAATTATCAGGGAGTACCTGACATAAATGAAGATGTCTTGAAGGCTCCATCAGTACCTGTTTTCTTTTTGT CAAGCTTCAAAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTCTCTGGTGAAATTCGTGTTAGCAAAT GCAGCAGTCTTGGAGCAGGTGAAAATATGTACAGCTTTTTGGCTGCGATATTCAGATATTAACATGGAGAAAGTTAAGCA GCAGATACTCTCTTTACCTAAACGTTCCAGCTTTTCCATGATTGAATTTTGTAATGCCAAAGGTTCCTGAAGATTTCATA ACATCCAAAGGATATACAGCTTTTATTGGCTGCTTTAATGCATTACAACAATGTAAACTAGAAGTACACTAGTATGATAT CCTTTTTCTTTTTTCGTGTTAATTTTGATTCAATGAATCTGTTGGTTATAGAAAATCTAATATCATATCAAAAAGATCTA TT
CDS sequence (LotjaGi3g1v0256100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCATTCATGCTTACTGAACACTAACACTGTCTGTCTAAACTTGTTAACCAGGTGTTTCTTATTCATGGATTCAGA TGCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTGCATGAAAGCATTCTGGGTCACATACTCTCTTTCCTTC CAACTATTGAATCAGTTCAGACTAGTGTGTTATCAAGAAGGTGGATTGATGCTTGGACATCAATAATAAATCTTAAGTTT GATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGCAGTTTATGTGTTTTGTGAACAGAGTGCTTCTTCACCT TGCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCTTTTAATCATGACTCATCTCAGGTGAATGCATGGATCT CTTCTGTTTTACATAGAAGACTCCAGAAGCTTCACATTCAGTGTTATGATAAAGTTCTCCTTTCTTCCCATTCCCTTTTT AGCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCACTCTCAATGTTCCCATCTCTGCTTTTCTCCCAAACCT TCAAAGTTTTAGCATTTCTGGGGTGAATCTAGTGAGTGATTCCCCTACTGATTCCAAAGACATAACTCTCAGCTTCCCAG TTCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAATGCAGGACATTAGTATTCAAGCGCCTCTACTTGAAAAG TTTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTAAACCTGCCATCAAGGTTTTTAGTTCTAAACTAACCGA TTTCTCGTACGAGGGTGATCTTGAACAAGAGGTCATTCTGTTTCATCCATCATCGATTCGCAGTGCTTCTCTTGTGATTG TTGTTGATGAAGATAGAAAGGACAGATCATCAATGGAAAAGTTAGTGTTTCAAGCACAAATGTTTCTCAGACAAATGCAT CAGGTGGAACAACTCAAATTGTTGTTTTACAAGGTCTTAATCCATGCTAAAGATATCTTTACTCATTTGCCTGCCTTTGG AAAGTTGACTTATCTGCAACTAAACGAGGTTACCGGTGAAGCTCTGTTTCACTTACTCCACCATTCCCCATTTCTTAGCA CTCTTGATTTGCTTAACGTGAGTTTTCTCTATCTTTACATAACAAAAATTTAA
Protein sequence (LotjaGi3g1v0256100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHSCLLNTNTVCLNLLTRCFLFMDSDAATAVGEIDMISNLHESILGHILSFLPTIESVQTSVLSRRWIDAWTSIINLKF DDSLLFHGKKMQREQFMCFVNRVLLHLANSTIQSFSLCLTSFNHDSSQVNAWISSVLHRRLQKLHIQCYDKVLLSSHSLF SCNSLVELKLQMKCTLNVPISAFLPNLQSFSISGVNLVSDSPTDSKDITLSFPVLKVFEARGCEWLTMQDISIQAPLLEK FSIAIWNTHSNGKCKPAIKVFSSKLTDFSYEGDLEQEVILFHPSSIRSASLVIVVDEDRKDRSSMEKLVFQAQMFLRQMH QVEQLKLLFYKVLIHAKDIFTHLPAFGKLTYLQLNEVTGEALFHLLHHSPFLSTLDLLNVSFLYLYITKI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 28 | 83 | 56 | 3.01E-7 | ||
| PANTHER | 29 | 379 | 351 | 1.9E-124 | – | |
| PANTHER | 29 | 379 | 351 | 1.9E-124 | – | |
| Gene3D | 37 | 272 | 236 | 2.4E-14 | ||
| SUPERFAMILY | 114 | 380 | 267 | 2.79E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…