Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256400 |
| Transcript ID | LotjaGi3g1v0256400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|V7BXR9|V7BXR9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0256400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44071494..44074862) extracted from Lotus japonicus Gifu genome v1.2.
AAGATTAATCAAACCTGTTCGAAAAAATTCAATTAAGTTAAGATAAACTGTGTTAGATAGCCACTCACTCTCACAATCAG CAGTTTAATTTTCTGCTTCCCTTTATGATTTGTTTGTCATTTTCTCCACTGATGTAAAAGTTAGCAATATGTTCCTTTTG AAAGTTCAACACTCTACGTCTGTCCAATAAAAACGAACCAACTGGAAAATGAGATGATGCTAATGAAATCTGTATTGGGT GTGTATAAGTATTGTACTCCTCTGAATGCTTTCAAAATAACACATTCTCTCATCCACTCTAGCGTTGTGAGACATTTATT TTTCAGGCATGGGATTACGTATTCATTCACTTTATAATATGTAGTATATTTTACACTCATATCTAATGGTGCATTCAGAT GCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTGCATGAAAGCATTCTGGGTCACATACTCTCTTTCCTTCC AACTATTGAATCAGTTCAGACTGGTGTGTTATCAAGAAGGTGGATTGATGCTTGGACATCAATAATAAATCTTAAGTTTG ATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGCAGTTTGTGTGTTTTGTGAACAGAGTGCTTCTTCACCTT GCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCTTTTAATCATGACTCATCTCAGGTGAATGCATGGATCTC TTCTGTTTTACATAGAGGACTCCAGAAGCTTCACATTCAGTGTTATGATAAAGTCCTTCTTTCTTCCCATTCCCTATTTA GCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCACTCTAAATGTTCCCATCTCTGCTTTTCTCCCAAACCTT CAAAGTTTTAGCATTTCGGGGGTGAAACTAGTGAGTGATTCCCCTACTGATTCCAAAGACATAACTCTCAGCTTCCCCGT TCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAATGCAGGACATTAGTATTCAAGCACCTCTACTTGAAAAGT TTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTAAACCTGCCATCAAGGTTTTTAGTTCTAAACTAACCGAT TTCTCTTATGAGGGTGATCTTGAACAAGAGATCAATCTGCTTCATCCGTCATCGATTCGCAGTGCTTCTGCTGTGATTGT TGTTGATGAAGATAGAAAGGACAGATTATCAATGGAAAAACTAGTGTTTCAAGCACAAATGTTTCTCAGACAATTCCATC AAGTGGAGCGACTGAAATTGTTGTTTTACAAGGTATGCTTGGGTTTCATGAAATATGAATGACAATTATGTAGATATCCA AAACGGAATAGTAGTGTTACATGTTTTTGCATAGTAAATTTTAATTAAACATTAAAACTTGTTTTTCATTTGAAAAGTTT ATTTTTATTTTTTAGTAGAAAATTTATTTATGATATTATATTTATTGAAGAATATTTATGTCATTTTATAAACATATTTT TTTTTCTTTTCTCTCAGTTTTCTTCAAATCTCCGTACCAGCTATTGTATTGGTAGAGAGTTTCAAAGACACCATTAGAAG ATGTTGTACTCTTTTTCCTTTACTAAATTTTTATTCCAATAAATTATTTCTGTGAAGATTTTAACGAAACATGTTCTCTA AGTGTGGTCTTTGGGGTGGTTTAGTTTGATTGGTTTATGTTGATTTGTCATATTAAAGAGAGGTTTGTTCTCATCAAATC TACTTATCCAATGATATATATCTTTTGCCCCCGAAAAAACAAAGGTTTAATTCTATAATCTAGACAATAGAACCTAATTT CCTGATGTTTTACGAGTTAGGACCTATCTCTTTTCTTAATTTGAATGTGAATATTTTGTTTTTTGGTTGCCATACAGGTC TTAATCCATGCTAAAGATGTCTTCACTCATTTGCCTGCCTTTGGAAAGTTGACTTATCTGCAACTAAACGAGGTTACCGG TGAAGCTCTGTTTCACTTGCTCCACCATTCCCCATTTCTTAGCAATCTTGATTTGCTTAACGTGAGTTTTCTCTATCTTT ACATAACAATTCAAAGTGCTTTAATTTAGTTTATGTGTTAAATTGTTAGCTATAAATACACATCATGATTAATTGACCAA TGACTCACTGTAAAAAATATAATTTCAGGGAGTATCTGACTTAAATGAAGATGTCTTGAAGGCTCCAGCAGTACCTGTTT GCTTTTTGTCAAGCTTCAAAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTCTCTGGTGAAATTCGTG TTAGCAAATGCAGCAGTCTTGGAGCGGGTGAAAATATGTACAGCTTTTTGGCTGCGATATTCAGATATTGACATGGAGAA AGTTAAGCAGCAGATACTCTCTTTACCTAAACGTTCCAGCTTTTCCATGATTGAATTTTGTAATGCCAAAGGTTCCTGAA GATTTCATAACATTCAAACGGGAAAGTGTATGCGTGATTTATAACTCGGATAAATGGTAGGGTACAAGATTTAAAACCCG GATGTGTTATGTTTTTAGAAAGAAGAAACGAAATCTTCACTGATGTGGGACTTGAATTGTTTTTCTTGTCTGGAAAGAAC AGAGTCTACAACACTCCAAACTCTATGGCTTTGCCCTTCACAAGCCTCTTGATAATGTTGCGGTGCTATGTTTTTGTTCC AAACAGAGTGAAAAAGGTGAGGGATTGGAAGGGGAAGTGTGAAACAAAGAAGGAAAGAGAGAAAGAAAAGCTTAAAAAGA GAAACAATGAAACTTTGTATTCCGGGAATTATAATCTCGGAATATTTGAAAATGCATATCGTGTTTTCGATCTCGGAAGA AAATGGTAGTTATGTTCTGGGCTTATTTCTCAAAACAATAACTTGTTACGTGTCCGGGTTTTCAGAACCCGGTAGTGAAT TTAAGTAAGGACATTTTAATATTTTACTACATTAAAGTGGGGTGAGAAATTGAGTGGTTGGGGTGTTAAGTTTAACACCC TTACGAATTATTCTACGTGGTATAAATAATTTCAACCTCTTCTTGTTCCGCGCGGCCTTGAAGGTTATGTCAATCGTAGT GCAACTCCTATCCCGTGAATACTGTAACGCCCCGATTTTTGAAGGTCACTTTAGTATAGCCTTTACACAAATAAAATATG CTGACTAATCTTCTAGAGTCCAAAAATGTAAATATACTTTTCTTCCAAAACATGCTCTAGAAATTGCATAGTAATTACCC AATAATAGAGAACTTTATATCCATAAATATACGTACAAATGAATCTTCAAAAAAGAAATACTAAAGTCTTCTTATGCCAG ACAAGTTCC
CDS sequence (LotjaGi3g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCATTCAGATGCTGCGACGGCAGTTGGAGAAATAGACATGATTAGCAATTTGCATGAAAGCATTCTGGGTCACAT ACTCTCTTTCCTTCCAACTATTGAATCAGTTCAGACTGGTGTGTTATCAAGAAGGTGGATTGATGCTTGGACATCAATAA TAAATCTTAAGTTTGATGACAGTTTGCTGTTTCATGGCAAGAAAATGCAGAGAGAGCAGTTTGTGTGTTTTGTGAACAGA GTGCTTCTTCACCTTGCTAATTCAACCATCCAGAGTTTCTCTCTTTGTTTAACATCTTTTAATCATGACTCATCTCAGGT GAATGCATGGATCTCTTCTGTTTTACATAGAGGACTCCAGAAGCTTCACATTCAGTGTTATGATAAAGTCCTTCTTTCTT CCCATTCCCTATTTAGCTGCAATTCTCTTGTAGAATTGAAGCTTCAAATGAAATGCACTCTAAATGTTCCCATCTCTGCT TTTCTCCCAAACCTTCAAAGTTTTAGCATTTCGGGGGTGAAACTAGTGAGTGATTCCCCTACTGATTCCAAAGACATAAC TCTCAGCTTCCCCGTTCTCAAAGTGTTTGAAGCTAGAGGGTGTGAGTGGTTAACAATGCAGGACATTAGTATTCAAGCAC CTCTACTTGAAAAGTTTTCCATAGCCATTTGGAACACCCACTCAAATGGAAAATGTAAACCTGCCATCAAGGTTTTTAGT TCTAAACTAACCGATTTCTCTTATGAGGGTGATCTTGAACAAGAGATCAATCTGCTTCATCCGTCATCGATTCGCAGTGC TTCTGCTGTGATTGTTGTTGATGAAGATAGAAAGGACAGATTATCAATGGAAAAACTAGTGTTTCAAGCACAAATGTTTC TCAGACAATTCCATCAAGTGGAGCGACTGAAATTGTTGTTTTACAAGGTCTTAATCCATGCTAAAGATGTCTTCACTCAT TTGCCTGCCTTTGGAAAGTTGACTTATCTGCAACTAAACGAGGTTACCGGTGAAGCTCTGTTTCACTTGCTCCACCATTC CCCATTTCTTAGCAATCTTGATTTGCTTAACGGAGTATCTGACTTAAATGAAGATGTCTTGAAGGCTCCAGCAGTACCTG TTTGCTTTTTGTCAAGCTTCAAAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTCTCTGGTGAAATTC GTGTTAGCAAATGCAGCAGTCTTGGAGCGGGTGAAAATATGTACAGCTTTTTGGCTGCGATATTCAGATATTGACATGGA GAAAGTTAAGCAGCAGATACTCTCTTTACCTAAACGTTCCAGCTTTTCCATGATTGAATTTTGTAATGCCAAAGGTTCCT GA
Protein sequence (LotjaGi3g1v0256400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVHSDAATAVGEIDMISNLHESILGHILSFLPTIESVQTGVLSRRWIDAWTSIINLKFDDSLLFHGKKMQREQFVCFVNR VLLHLANSTIQSFSLCLTSFNHDSSQVNAWISSVLHRGLQKLHIQCYDKVLLSSHSLFSCNSLVELKLQMKCTLNVPISA FLPNLQSFSISGVKLVSDSPTDSKDITLSFPVLKVFEARGCEWLTMQDISIQAPLLEKFSIAIWNTHSNGKCKPAIKVFS SKLTDFSYEGDLEQEINLLHPSSIRSASAVIVVDEDRKDRLSMEKLVFQAQMFLRQFHQVERLKLLFYKVLIHAKDVFTH LPAFGKLTYLQLNEVTGEALFHLLHHSPFLSNLDLLNGVSDLNEDVLKAPAVPVCFLSSFKVFQFNGFNVKEHELSLVKF VLANAAVLERVKICTAFWLRYSDIDMEKVKQQILSLPKRSSFSMIEFCNAKGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 7 | 59 | 53 | 5.1E-7 | ||
| PANTHER | 9 | 446 | 438 | 2.7E-170 | – | |
| PANTHER | 9 | 446 | 438 | 2.7E-170 | – | |
| Gene3D | 15 | 265 | 251 | 4.2E-13 | ||
| Pfam | 372 | 413 | 42 | 6.3E-11 | ||
| SMART | 374 | 448 | 75 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…