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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256700 |
| Transcript ID | LotjaGi3g1v0256700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|V7BXR9|V7BXR9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0256700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44267930..44270545) extracted from Lotus japonicus Gifu genome v1.2.
GACCCCGTATAGATGCTGCGGTAGCGGTGGTGTCATATGCACCTCTAATTTTTTTTTTTTTTTTTCATTTTTAGTGTTTC TAACTCTAATCCTGTAATACTAACGGAGTGTTAGTTCAAATAATACATTTCTCTTAACTAAAGTTTTAGGTTCGAGTTTT ATAGAAGAATAAAATCTCCGTTTGAAGAATTAGCCTACAATGATAATAATATGAATGTTTTCGGCTCGAATATGATAATC TCGGGTGGAAAATACTTATACAAGCACCAAAGGGTGTGACTTAAAAACTTCCAAATTTTTCCATGTTAGCTGTTGCCGTC TATAAAGGTTGTACTTATCTTAATCCTTTCGGTAACAATTTTTTTCATCCACTCTGCAGAAATTGTAAAGAACTGTTTGG CTTAATTTTTCAGGAATGTACTTGCATACTTATTCACTTAAGTATGTTCTAGTCTCCAGTCATATTGTGCTTGCTTGAAT GGTTGTTAGTTGTTACTGTTACACATGACACTATAGATTTGTTTATTCCCACTTAATTACTGAACACTGTCTACATTTGT GAAGCAGGTGCTTGGTACTGATCATGGATTCAAATGCTGCAACAGAAGTTGGAGAAATGGACATGATTAGCAATTTACAT GAGAGCATTCTGGGTCACATGCTGTCTTTCCTTCCGACTATAGAAGCAATTCGGACTAATGTGTTGTCTAAAAGTTGGAT TGATGTTTGGAAATCTATAAAATGTCTAAAGTTTGATGACAGTTTGCTCATTCATGGCAAGAAGATGCAGAAAGAGGAGT TTGTGTGTTTTGTGAACACAGTTTTATTTCACTTTGCTAATTCAACCATACAGGGTTTCTCTCTTTGTTTAACATGTTAT AATTATGATTCACCCCAAGTGAGAGCATGGATCTCCTCTGTGTTAGAAAGGGGAGTCCAAAAGCTTAACATTCAGTATGC TGATAAAGTCCTTCTTTCTTCCAATTCCCTTTTTAGCTGCATTTCTCTTGTAGAGTTGGTGCTTCAAATGAGATGTACTC TTAATGTTCCAATCTCTGCCTGTCTCCCAAACCTTCAAAGCCTTCACATTTCCGGGGTTAGACTAGTGAGTGATTCCTGC ACTTGTTCCAATGACATATCTCTTAGCTTCCCAGTCCTCAAAGTATTTGAAGCTAGAGGATGTGAGTGGTCAACTATGCA GGACATTAGTATTCAAGCACCTCTACTTGAAAGGCTTTCCATTAAGAATTCCTTATCAAATGAAGCTTGTAAATCTGCCA TTAAGGTTTTTAGCACATGTCTAACAGATTTTTCTTATGAGGGTGATCTTGAACAAGAGATCATTCTATTTGATCCGTCA TCCATTCGCAGTGCTTCTATTGTGATTGTTATTGATGAAGATAGAATGGACAGAATCAAAAAACTTGTGTTTCAAGCACG AAAGCTTCTCGGACAAATCCATCAAGTGGAACAACTGAAATTATTGTTTTACAAGGTATGGTTTGGCTTCATGATACGTG AATGACAATTATGCAGAGAAATGTGTGGAATAGTAGTTTTATCTGTGGTTGCATTTGCATAGCATAAACTTGTTTTGTTA TAATGACAAAGCTATGTGTTTTGAAATATATTTCAACTACAACCACAGGCATCTACTGATCTGGTATGGAGATTGAACTA TTAAGAAGTACATTTGGCTGTGCCGAAATTATCCCGAATTTGAATCATTTTTGTTGTTGTCACACAGGTCTTAATCAATG CTAAAGGTATCTTCAACCATTTGCCTGCCTTTGGAAGGTTGACTAATCTGCAACTGAATGAGGTTACTGGTGAAGCTCTG TTGCACTTTCTCCACAATTCCCCATTTCTTGATACTCTTGTTTTACTTAATGTGAGTTTTCTTGCTTTACATAACAGAAA TTCAAACTCCTTGTTTATTTACTATATAGATATAATACAATAGAGTGATAAATGACTCATTGTACCAAAATAATTTCAGG GAGTATGTGACTTGAATAAAGATGTTTTGGCTGCTGCATCAGTGCCCCTTTGCTTTTTGTCAAGCTTCAGAGTATTTCAG TTTAATGGATTTAATGTGAAAGAGCATGAGCTTTGTCTGGTAAAATTTGTGTTGGCAAATGCGGCAATCTTAGAGCGGGT GACTATATGTACAGCTTTTTGGTTGCGATATTCTGATATTGACATGGGGAAAGTTAAGGGACAGATACTCTCATTACCAA AATATTCCAGATCATGCATGATAAAATTTTGTGATGTCAACGGTTCCTGAAGATTTCATAACATCCAAAGAGTACTTGCA CCTCACCAGTCAAATTTGTGTCTGTTGCTTTATATAGAATACTTTTTTCTGTATGAATCACGAAAAAATATAATGGAAGC TGTCAAAATTTAACTGACACCTTAATCCCCCCTTGCAGCTTCACACTTGGTATTAGTGTTTGTACTGATATAGGCGTATC AACATTGTAACCTAATGGGCTTTGATATATATGTATAATAAATGGGCCGGGCGACCCATGACCTGAACAGGTCAAAACTC AGAATATAAATACTAGACACCACCTAAGCGGTTGGGGATCTAATCTTTTCACGCAT
CDS sequence (LotjaGi3g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCAAATGCTGCAACAGAAGTTGGAGAAATGGACATGATTAGCAATTTACATGAGAGCATTCTGGGTCACATGCT GTCTTTCCTTCCGACTATAGAAGCAATTCGGACTAATGTGTTGTCTAAAAGTTGGATTGATGTTTGGAAATCTATAAAAT GTCTAAAGTTTGATGACAGTTTGCTCATTCATGGCAAGAAGATGCAGAAAGAGGAGTTTGTGTGTTTTGTGAACACAGTT TTATTTCACTTTGCTAATTCAACCATACAGGGTTTCTCTCTTTGTTTAACATGTTATAATTATGATTCACCCCAAGTGAG AGCATGGATCTCCTCTGTGTTAGAAAGGGGAGTCCAAAAGCTTAACATTCAGTATGCTGATAAAGTCCTTCTTTCTTCCA ATTCCCTTTTTAGCTGCATTTCTCTTGTAGAGTTGGTGCTTCAAATGAGATGTACTCTTAATGTTCCAATCTCTGCCTGT CTCCCAAACCTTCAAAGCCTTCACATTTCCGGGGTTAGACTAGTGAGTGATTCCTGCACTTGTTCCAATGACATATCTCT TAGCTTCCCAGTCCTCAAAGTATTTGAAGCTAGAGGATGTGAGTGGTCAACTATGCAGGACATTAGTATTCAAGCACCTC TACTTGAAAGGCTTTCCATTAAGAATTCCTTATCAAATGAAGCTTGTAAATCTGCCATTAAGGTTTTTAGCACATGTCTA ACAGATTTTTCTTATGAGGGTGATCTTGAACAAGAGATCATTCTATTTGATCCGTCATCCATTCGCAGTGCTTCTATTGT GATTGTTATTGATGAAGATAGAATGGACAGAATCAAAAAACTTGTGTTTCAAGCACGAAAGCTTCTCGGACAAATCCATC AAGTGGAACAACTGAAATTATTGTTTTACAAGGTCTTAATCAATGCTAAAGGTATCTTCAACCATTTGCCTGCCTTTGGA AGGTTGACTAATCTGCAACTGAATGAGGTTACTGGTGAAGCTCTGTTGCACTTTCTCCACAATTCCCCATTTCTTGATAC TCTTGTTTTACTTAATGGAGTATGTGACTTGAATAAAGATGTTTTGGCTGCTGCATCAGTGCCCCTTTGCTTTTTGTCAA GCTTCAGAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTGTCTGGTAAAATTTGTGTTGGCAAATGCG GCAATCTTAGAGCGGGTGACTATATGTACAGCTTTTTGGTTGCGATATTCTGATATTGACATGGGGAAAGTTAAGGGACA GATACTCTCATTACCAAAATATTCCAGATCATGCATGATAAAATTTTGTGATGTCAACGGTTCCTGA
Protein sequence (LotjaGi3g1v0256700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSNAATEVGEMDMISNLHESILGHMLSFLPTIEAIRTNVLSKSWIDVWKSIKCLKFDDSLLIHGKKMQKEEFVCFVNTV LFHFANSTIQGFSLCLTCYNYDSPQVRAWISSVLERGVQKLNIQYADKVLLSSNSLFSCISLVELVLQMRCTLNVPISAC LPNLQSLHISGVRLVSDSCTCSNDISLSFPVLKVFEARGCEWSTMQDISIQAPLLERLSIKNSLSNEACKSAIKVFSTCL TDFSYEGDLEQEIILFDPSSIRSASIVIVIDEDRMDRIKKLVFQARKLLGQIHQVEQLKLLFYKVLINAKGIFNHLPAFG RLTNLQLNEVTGEALLHFLHNSPFLDTLVLLNGVCDLNKDVLAAASVPLCFLSSFRVFQFNGFNVKEHELCLVKFVLANA AILERVTICTAFWLRYSDIDMGKVKGQILSLPKYSRSCMIKFCDVNGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 4 | 59 | 56 | 5.63E-6 | ||
| PANTHER | 8 | 440 | 433 | 2.2E-172 | – | |
| PANTHER | 8 | 440 | 433 | 2.2E-172 | – | |
| Gene3D | 13 | 254 | 242 | 2.1E-13 | ||
| Pfam | 366 | 408 | 43 | 7.7E-10 | ||
| SMART | 369 | 443 | 75 | 2.8E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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