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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0256700 |
| Transcript ID | LotjaGi3g1v0256700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G14710.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9LUC4|FDL43_ARATH F-box/FBD/LRR-repeat protein At3g14710; TrEMBL-Plants: tr|V7BXR9|V7BXR9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0256700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:44268313..44270512) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAAGAACTGTTTGGCTTAATTTTTCAGGAATGTACTTGCATACTTATTCACTTAAGTATGTTCTAGTCTCCAGTCAT ATTGTGCTTGCTTGAATGGTTGTTAGTTGTTACTGTTACACATGACACTATAGATTTGTTTATTCCCACTTAATTACTGA ACACTGTCTACATTTGTGAAGCAGGTGCTTGGTACTGATCATGGATTCAAATGCTGCAACAGAAGTTGGAGAAATGGACA TGATTAGCAATTTACATGAGAGCATTCTGGGTCACATGCTGTCTTTCCTTCCGACTATAGAAGCAATTCGGACTAATGTG TTGTCTAAAAGTTGGATTGATGTTTGGAAATCTATAAAATGTCTAAAGTTTGATGACAGTTTGCTCATTCATGGCAAGAA GATGCAGAAAGAGGAGTTTGTGTGTTTTGTGAACACAGTTTTATTTCACTTTGCTAATTCAACCATACAGGGTTTCTCTC TTTGTTTAACATGTTATAATTATGATTCACCCCAAGTGAGAGCATGGATCTCCTCTGTGTTAGAAAGGGGAGTCCAAAAG CTTAACATTCAGTATGCTGATAAAGTCCTTCTTTCTTCCAATTCCCTTTTTAGCTGCATTTCTCTTGTAGAGTTGGTGCT TCAAATGAGATGTACTCTTAATGTTCCAATCTCTGCCTGTCTCCCAAACCTTCAAAGCCTTCACATTTCCGGGGTTAGAC TAGTGAGTGATTCCTGCACTTGTTCCAATGACATATCTCTTAGCTTCCCAGTCCTCAAAGTATTTGAAGCTAGAGGATGT GAGTGGTCAACTATGCAGGACATTAGTATTCAAGCACCTCTACTTGAAAGGCTTTCCATTAAGAATTCCTTATCAAATGA AGCTTGTAAATCTGCCATTAAGGTTTTTAGCACATGTCTAACAGATTTTTCTTATGAGGGTGATCTTGAACAAGAGATCA TTCTATTTGATCCGTCATCCATTCGCAGTGCTTCTATTGTGATTGTTATTGATGAAGATAGAATGGACAGAATCAAAAAA CTTGTGTTTCAAGCACGAAAGCTTCTCGGACAAATCCATCAAGTGGAACAACTGAAATTATTGTTTTACAAGGTATGGTT TGGCTTCATGATACGTGAATGACAATTATGCAGAGAAATGTGTGGAATAGTAGTTTTATCTGTGGTTGCATTTGCATAGC ATAAACTTGTTTTGTTATAATGACAAAGCTATGTGTTTTGAAATATATTTCAACTACAACCACAGGCATCTACTGATCTG GTATGGAGATTGAACTATTAAGAAGTACATTTGGCTGTGCCGAAATTATCCCGAATTTGAATCATTTTTGTTGTTGTCAC ACAGGTCTTAATCAATGCTAAAGGTATCTTCAACCATTTGCCTGCCTTTGGAAGGTTGACTAATCTGCAACTGAATGAGG TTACTGGTGAAGCTCTGTTGCACTTTCTCCACAATTCCCCATTTCTTGATACTCTTGTTTTACTTAATGTGAGTTTTCTT GCTTTACATAACAGAAATTCAAACTCCTTGTTTATTTACTATATAGATATAATACAATAGAGTGATAAATGACTCATTGT ACCAAAATAATTTCAGGGAGTATGTGACTTGAATAAAGATGTTTTGGCTGCTGCATCAGTGCCCCTTTGCTTTTTGTCAA GCTTCAGAGTATTTCAGTTTAATGGATTTAATGTGAAAGAGCATGAGCTTTGTCTGGTAAAATTTGTGTTGGCAAATGCG GCAATCTTAGAGCGGGTGACTATATGTACAGCTTTTTGGTTGCGATATTCTGATATTGACATGGGGAAAGTTAAGGGACA GATACTCTCATTACCAAAATATTCCAGATCATGCATGATAAAATTTTGTGATGTCAACGGTTCCTGAAGATTTCATAACA TCCAAAGAGTACTTGCACCTCACCAGTCAAATTTGTGTCTGTTGCTTTATATAGAATACTTTTTTCTGTATGAATCACGA AAAAATATAATGGAAGCTGTCAAAATTTAACTGACACCTTAATCCCCCCTTGCAGCTTCACACTTGGTATTAGTGTTTGT ACTGATATAGGCGTATCAACATTGTAACCTAATGGGCTTTGATATATATGTATAATAAATGGGCCGGGCGACCCATGACC TGAACAGGTCAAAACTCAGAATATAAATACTAGACACCAC
CDS sequence (LotjaGi3g1v0256700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTACTTGCATACTTATTCACTTAACAGGTGCTTGGTACTGATCATGGATTCAAATGCTGCAACAGAAGTTGGAGAAAT GGACATGATTAGCAATTTACATGAGAGCATTCTGGGTCACATGCTGTCTTTCCTTCCGACTATAGAAGCAATTCGGACTA ATGTGTTGTCTAAAAGTTGGATTGATGTTTGGAAATCTATAAAATGTCTAAAGTTTGATGACAGTTTGCTCATTCATGGC AAGAAGATGCAGAAAGAGGAGTTTGTGTGTTTTGTGAACACAGTTTTATTTCACTTTGCTAATTCAACCATACAGGGTTT CTCTCTTTGTTTAACATGTTATAATTATGATTCACCCCAAGTGAGAGCATGGATCTCCTCTGTGTTAGAAAGGGGAGTCC AAAAGCTTAACATTCAGTATGCTGATAAAGTCCTTCTTTCTTCCAATTCCCTTTTTAGCTGCATTTCTCTTGTAGAGTTG GTGCTTCAAATGAGATGTACTCTTAATGTTCCAATCTCTGCCTGTCTCCCAAACCTTCAAAGCCTTCACATTTCCGGGGT TAGACTAGTGAGTGATTCCTGCACTTGTTCCAATGACATATCTCTTAGCTTCCCAGTCCTCAAAGTATTTGAAGCTAGAG GATGTGAGTGGTCAACTATGCAGGACATTAGTATTCAAGCACCTCTACTTGAAAGGCTTTCCATTAAGAATTCCTTATCA AATGAAGCTTGTAAATCTGCCATTAAGGTTTTTAGCACATGTCTAACAGATTTTTCTTATGAGGGTGATCTTGAACAAGA GATCATTCTATTTGATCCGTCATCCATTCGCAGTGCTTCTATTGTGATTGTTATTGATGAAGATAGAATGGACAGAATCA AAAAACTTGTGTTTCAAGCACGAAAGCTTCTCGGACAAATCCATCAAGTGGAACAACTGAAATTATTGTTTTACAAGGTC TTAATCAATGCTAAAGGTATCTTCAACCATTTGCCTGCCTTTGGAAGGTTGACTAATCTGCAACTGAATGAGGTTACTGG TGAAGCTCTGTTGCACTTTCTCCACAATTCCCCATTTCTTGATACTCTTGTTTTACTTAATGGAGTATGTGACTTGAATA AAGATGTTTTGGCTGCTGCATCAGTGCCCCTTTGCTTTTTGTCAAGCTTCAGAGTATTTCAGTTTAATGGATTTAATGTG AAAGAGCATGAGCTTTGTCTGGTAAAATTTGTGTTGGCAAATGCGGCAATCTTAGAGCGGGTGACTATATGTACAGCTTT TTGGTTGCGATATTCTGATATTGACATGGGGAAAGTTAAGGGACAGATACTCTCATTACCAAAATATTCCAGATCATGCA TGATAAAATTTTGTGATGTCAACGGTTCCTGA
Protein sequence (LotjaGi3g1v0256700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYLHTYSLNRCLVLIMDSNAATEVGEMDMISNLHESILGHMLSFLPTIEAIRTNVLSKSWIDVWKSIKCLKFDDSLLIHG KKMQKEEFVCFVNTVLFHFANSTIQGFSLCLTCYNYDSPQVRAWISSVLERGVQKLNIQYADKVLLSSNSLFSCISLVEL VLQMRCTLNVPISACLPNLQSLHISGVRLVSDSCTCSNDISLSFPVLKVFEARGCEWSTMQDISIQAPLLERLSIKNSLS NEACKSAIKVFSTCLTDFSYEGDLEQEIILFDPSSIRSASIVIVIDEDRMDRIKKLVFQARKLLGQIHQVEQLKLLFYKV LINAKGIFNHLPAFGRLTNLQLNEVTGEALLHFLHNSPFLDTLVLLNGVCDLNKDVLAAASVPLCFLSSFRVFQFNGFNV KEHELCLVKFVLANAAILERVTICTAFWLRYSDIDMGKVKGQILSLPKYSRSCMIKFCDVNGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 19 | 74 | 56 | 6.02E-6 | ||
| PANTHER | 21 | 455 | 435 | 3.8E-172 | – | |
| PANTHER | 21 | 455 | 435 | 3.8E-172 | – | |
| Gene3D | 28 | 269 | 242 | 2.2E-13 | ||
| Pfam | 381 | 423 | 43 | 8.1E-10 | ||
| SMART | 384 | 458 | 75 | 2.8E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0256700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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