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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0258600 |
Transcript ID | LotjaGi3g1v0258600.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Trichome birefringence-like protein; TAIR: AT1G78710.1 TRICHOME BIREFRINGENCE-LIKE 42; Swiss-Prot: sp|Q9ZV89|TBL42_ARATH Protein trichome birefringence-like 42; TrEMBL-Plants: tr|K7LWJ1|K7LWJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0258600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:45075131..45077402) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTTTTCTTCCCTAATGAACAGGTTTGATGGTAAGAAGTTCTTGGAGAGAAACACAGGGAAGAAGGTAATGTTTGTGG GGGATTCCATAAGCAACAACATGTGGCAGTCACTCACTTGTTTGCTTCACATTGCAGTCCCTAACTCAAATTATACCTTA AGAACTGTAACAAAGGAACTTTCTGTCTTCTCATTTCCGGTAGGATTGAATATCTACCTATTTTAGAGGAAAATTATGAA ATTACATAATTGTTTGATTAAATTAACGAGTTTGTCCTTTTGTTTAGGAATATGGAGCTTCAATCATGTGGTTGAAAAAT GGGTTCCTTGTGGATTTGGTTCATGATAAAGAAAAAGGCAGAATCCTAAAGTTAGACTCCATTAGCTCTGGGGACCAGTG GAAACATGTTGATGCTTTGATTTTCAATACCTACCATTGGTGGACTCATACAGGACATACTCAAACGTATATTGAAACTT TTGAACTGCATTTTTGGGCATTTATGAGAAAAGTTAGCTGGTGTTTAAATTTTTTTTCCAATGTTTTGCAGATGGGATTA CTTTCAAGTGGGAAATGAGCTAATCAAGGACATGGATCACATGGAAGCTTTCAAGATTGGGCTAACTACTTGGGCTAAAT GGATCGATTCTAACATTGAGCCTTCAAAGACTAGAGTCTTGTTTCAGGGAATCGCTGCTTCCCATGTTGAGTAAGTTTCA CTGCTTGTTTCACTACTGAAATTTATTTCACAAACATAACTTGTTTGGGTACCTGTTAAAAAGTATTAAAATTGAAAAAT AACATATTTCCACAACACTTCATTATTAAAGTAGCATCATGTATTGTTTTTCTATTTTCATATTTTCTAACAAGTATCTA AACTGCTCCTTATCTGCATAGCTATCTCTGCCAATTTATGTTTCATTCTTCAAAAATTACAGCAAAGATGCTCATAAATG GAGTAAAACATGTGATAGTAATGTTCATATATATTATGTCTGTGATCACTTTGATAACTAAACCCTGCCCATGGATCAAA ACTTAAATATAGTTCTAAATGTGAAACTTTTATTGTTGTCCAATTAAAATATGACACGGCGATTAGAAATGGATAGTTCT GAAATTATTACAATTATTAAGTTAGTGGGTAGCTAAGTTTTTTAATTTTTATTAATCAACAACCTAATACAGTACCTATA AGTTGTATCCTTATTAAGCTGTCAAAAAAAAAGTTGTATCCTTATTAATATAATATTCTACGACAAGAGATCCGTAAAAC TTAGAAAGACAATTGCTAGCATTCTAAGTGTAGAGGCTGATTGCAATTTCCAAGTCCGAAATTGTTCAAGTTGGTGAAGA ATGAAGGAGTTCAATACTATATATATAGACTCAATTTTTTTGCTGCATATGCACATAAGAACACTTTTTAAGCTTATTTG TGTTTTTTCCTTCTTGTACTCTTGTTGTAGAGCATTTTAAGATGTAATTCAAATAACTAGTGTGGACGGATTTAGGTAAC GGTGCCATTCAGAGTCAAATATGTGTTGTAGCACCTATGGCCTTTGTCCCTCTTTGCTGGTGTTTCCTTCTCTGTTGTCT TCTCTTCTCAGCCTTTGAGTTCTCTTCTTGCTGTTTTCTTTTGCTTGTTTTGTATTCTTGTGTTTGGGCACCCCTTGTTC TCTTTTCTTTAATGCTAATTGGCTTCCCAATATATATATATATATAATTGTGTGTGTGTGTGTGTGTGTGTCTTTGTGTG TGTGTATGGGTGTGTGTTGTAAAAATTTGTTCATAGTCATTCTTTTGATAAAATATCTATTCATATAGACTGACCACTTA ATTTTAAATGAATATTCAAGTGGAAAGGGGTGCCTGAAACAAACTCAACCGGAGCAAGGATCAATGGTGCCTTATCCTGG TGTGGACATTGTAAAGAGTGTCCTCAGAAACATGGCAACTCCAGTTCAATTGCTCGACATTACTTTGCTGACGCAGCTAC GGAAGGATGGTCACCCTTCTATATACACAGGCCGTGGCATTTCTTATCAGGACTGCAGTCACTGGTGTCTTGCTGGTGTT CCTGATACTTGGAATCAAATATTGTATTCTGCACATCTTGGAAATTAGTATCTCCATCCTCCAAATATATATAGATATCT TATTTACATTATTCTTTCTCAAAGTTTATTTATTTCCCTTAAAAAACTGATTATTAACTTCGAACTATGCTAAAGATTAG TATCTATGAACATGTAATAAAACCTTCTTTTA
CDS sequence (LotjaGi3g1v0258600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGTTGAAAAATGGGTTCCTTGTGGATTTGGTTCATGATAAAGAAAAAGGCAGAATCCTAAAGTTAGACTCCATTAG CTCTGGGGACCAGTGGAAACATGTTGATGCTTTGATTTTCAATACCTACCATTGGTGGACTCATACAGGACATACTCAAA CATGGGATTACTTTCAAGTGGGAAATGAGCTAATCAAGGACATGGATCACATGGAAGCTTTCAAGATTGGGCTAACTACT TGGGCTAAATGGATCGATTCTAACATTGAGCCTTCAAAGACTAGAGTCTTGTTTCAGGGAATCGCTGCTTCCCATGTTGA TGGAAAGGGGTGCCTGAAACAAACTCAACCGGAGCAAGGATCAATGGTGCCTTATCCTGGTGTGGACATTGTAAAGAGTG TCCTCAGAAACATGGCAACTCCAGTTCAATTGCTCGACATTACTTTGCTGACGCAGCTACGGAAGGATGGTCACCCTTCT ATATACACAGGCCGTGGCATTTCTTATCAGGACTGCAGTCACTGGTGTCTTGCTGGTGTTCCTGATACTTGGAATCAAAT ATTGTATTCTGCACATCTTGGAAATTAG
Protein sequence (LotjaGi3g1v0258600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWLKNGFLVDLVHDKEKGRILKLDSISSGDQWKHVDALIFNTYHWWTHTGHTQTWDYFQVGNELIKDMDHMEAFKIGLTT WAKWIDSNIEPSKTRVLFQGIAASHVDGKGCLKQTQPEQGSMVPYPGVDIVKSVLRNMATPVQLLDITLLTQLRKDGHPS IYTGRGISYQDCSHWCLAGVPDTWNQILYSAHLGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 193 | 193 | 1.2E-102 | – | |
PANTHER | 1 | 193 | 193 | 1.2E-102 | ||
Pfam | 5 | 190 | 186 | 1.3E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0258600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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