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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0263900 |
| Transcript ID | LotjaGi3g1v0263900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor tfiiic, tau55-like protein, putative; TAIR: AT1G80745.1 Transcription factor TFIIIC, tau55-related protein; Swiss-Prot: sp|Q9D8P7|TF3C6_MOUSE General transcription factor 3C polypeptide 6; TrEMBL-Plants: tr|A0A0B2RX88|A0A0B2RX88_GLYSO Leucine-rich repeat-containing protein 40; Found in the gene: LotjaGi3g1v0263900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:49140235..49145431) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAGAAAAACCCTCAATAATCGTACGCTCTCTGCCTCTCTGTTTTCTCTCACGACTCACGCACGCTCTGTTGCTCTC GTCCTCTCTCTGCTCTCCAGCCTCTCCTTCATTCGAAGCTCTCTCTCTGTTCGTGCCTCTCTCTTTAGCCTCTCCTTCAG TTGGCTGTGTCACAACCTCTCTCTGCTCGTGCCTCTCCTCTCCATCGAACTGATCGAAGCTCTCTGCCTCAGTGCCTCTC AACTGCACGCACGCGACGACCGACGAGGGTTTGGGACGGTTTTCTGATTTCTCAGTCACTCAAAGTCAAAAGGTAATGCT TTCTGCCTTTCTCACTTCCCAGAATTTTCTTTGTATTGGGTTTTCTGAATTCTGATTCTGGAAAAGGGTTTGGGACTTTG GGTTCTTGTTCTAGGGTTTGATATCTCTGTGGTGGAAATTGAAATTGATTTCTCAGTAAGTATCTCTGTTGGCAAAATTG AAATTGAATTGATTATTGATCAATTGATGTCTTCTATTTTTCATGAACTAAACAAGCAGCTAACAGTGTCCTCCATACAA TTGTATTTCAATTCTGTTCAGCAAAAAAGATGAGATGTCATGTAATGATAGCTGAATTTTCTTTCCTGAATTTTCTTTCT CACTTCCCTGAATTTTCAGATCCTGGAAATGGCTTAGATGCAAAGCAAATGGGTTTTCTTACTCTTATTATGAGTGGCAT ACAAACCCAATTATCTGTTTAGAAGGGTTGTCATAGTTAGCAAGGTACAAGAGATCTGATATACACAAATTGATGTTGGG ATGCTTGCATTCATATGGGTGGCAATTAGAAGTTGATTAGCAGTTGTCTAGGCTATACTTATTGGCACGGAGCTGTTAGC ATGACCATGGGGTATCCAAGTAGTATACTAAGGGGGTACTGGCTTGTGAAAATTTCTTTGCTTGCTCTGGTTGTTTGCTG CTATCGCCATCGGCTAGCTGAAATTTTCCTTGTTAGCATTCTGTTCTCTGTTTTGGTTTTCTCTTAGATAGCTGTAGTTT AGTGTCTTGGTTGATAGTAAATTCTATTTATGTATGTTGGGTTGGGGCACCCCTTGTGCACCCTATTAATATTATTTGGC CTTTCAAAAAAAAAAAACTTCCCTGAATTTTCTTCCTAATGATAGTTGTAATGAAATAAAATAAGATGAGATGAAATGTA ACATAATATAGCTATCATTCCATTATTGATTACATCTACTGCAAATTGCTGCTGTTGCTGTCTTTACTGGCTTGTTGTTT TCACTGTTTTCTTGGACTATAAAGTAAACTCTTCTATTTCCATGAGAAACTTTCTCTCATGGTTTTATGTATAATATTTC TCTTTTTAAAAAAAATAAATATTTTCAATATATTTTAGTCTATAATTGCTTTTATGTTTAGCCTCACTGATATTTAAGGT CTGGATCCGCCACTCTCGTAATTTATAGAAGAAATAGAGGAATTAAGTATAACATTGGATTGTTATGTTTTATGTAGGGA TTTAGGTTACTGTTCTCAATTTCAATCCGTTATGTTTGAATTTCTTCAAGTAGTAAATATTTCCTTAATTTAAGCTTGTG TGTGTGTCTTCTGTTTTGGTGTTGCTGTTTAATACATTCTTGAGCTGTTGATTGAAAGTCAAAATCTTAAGTTTTTGTTT TTGATGTTTGAACCTAGTTGAAGATTTTCCTGTGGTTCTGGTCTGTGGTTTTAACTATAATTTTCCTTTCTAATTGTCAT TTATTTTTATAATCATGCATTCATGTGTATAAACTCTCCTTCCTCCATTTTAGATTTGTAATGGTGTGTTAGTTTTAACT ACCAATCTATGTGCAGGTATATGGAGGCAAATGCAACATCGCATTGTGATAATGAGGATCAAGATGAATATGTTTTGCTT GACTTGGATGGTGTTTCTGACCTACTTGACATTCCACCAAATGCAAACTATGTTCTAACTGTAACTTCCCAATTTGCAGC CCTTGACTTCATTTTTTTCATTGTGTTTATCAAATTAACCAGCTCTGTAAATTTTCAATACTGGAGCATTGATATTTTTC TTTGATAGAAACTGGATTATTTTTCTTGATTCAATTGCTATCTTACTACACAGCTCACACCATTTAGGATTTTTTCCAGA ACTTCTTGTGTATCAATTCCATTAAGCATACTGCTATATTACCTCTCGAACTTCTAATTTCATTATGGTTGCTTGCTTTT CTTTTTACTTTTCTTTTGCATTGTTCTTGTAATTTGTTGTCCATAAGCAACCTTATTCTTGGTATACTGTATTTTACCTA GCAAAGTATGCTTACGTTAAGCTATTGTTATTTACAGGGCCTTGATACTTTAAACCCAGTATTGATCATTGATGACAGAT TTAAGCTGGTAAGTTGTCTGCTTTAAATTCCCTATAGCCCTTTAGTTTTTTTTTTCTTTTATAATTGAGAATTTTTGGGT TAAGTAATATTTTGATGCTCTCATTTGAATTTGTTGAAGCTTATAGTGATGAAATCTATCCATTTGATATATATATATAT ATATATATATATATATATATATATATATATATATATATATATATAGGGGGCATATCAGGTGAGAGTAGTGGTTTATGGTG ATAGATGAGAGGAATTAATTCTAACCATTAGATCTACATATACGGTGAGGATGCAATCTCATAAATAACTGCACGTTACT CTCATTTACAACAACTTTCTAATACCACGTGCGACTTTAGTCACTCTCCCCACACGCCTCTCTCTTCCTCCCCTTTCTTC CCTCATCCCTGTACGTTCTAATTTTCCTTCAAACCCCCGGTTCCTAATATTTGGTTTTGCTTATGCCAGAAGAATTTCAG CTTTATTAATTCATCAATCTCTTCATAGAATGTCATTTTAAATGGACTTTCCAAGCTATTCAATTCACTAACAAAAAATC CCGTTGAATCTTCAAAATTGGATCAGGTGTTTGAAGAAGAAGTCAGAACAAAGAGACACTTACAATCAGCCATGGAGTCC CAAATTCCAGAAATCCCCAATTCATATCAGCCATGGACTCCCAAATCCCAGAAATCCCCAATTACGATTACAGAACTTTC GCAGCGCAAGGATTATTCATCGCTCGAAAGGAGGGTGGAGTGAAATAGAGCTTTGGTCCACTGGAACGCTGCGAGGTTGG AGTTGGCAAAAACGTCGTTGGGGACCCTGGCAGACGGCGAGAAGATTGTTCAGAGAAAAAACAACAGAGAAGAGGCAGAG TACAAGAGGGAGGAGAAACAGAGGGAATAGGTCACGTGAGTTGTTTAAAGGGAAGTTTAATCTCAACCTTATATTTTAAT CTAAGAGTTATTAATTATTCCTCTTATCTCACCATAAACCACACCTATCACCTGATATGCCCCCTATATATATATATATA TATATATATTTCTTTGATACTATGTATAGGATTAGCCAGATAATTATAATGCTGTATTTCAAATGAAGTTCCAGCAATGA AAAGTTGCTTTTATCTGTTTTCATTATTCTTCTTCCATTTGATAATTTGAAATTTTTAAGATGGGGATTCAAGTTACTTC AATTCTGTTTTTCCATTCTCTGAATGGATGATGGTCTTGTAAGGTTTATTATGGTTTGTTGTTGTCTACAGATCGGGGAG TATGAGGAGACAATTGGCACGAGTATTGCCTTTACAGAACAAGGTGAGTTACAGTCCATGCTTGTAAAATACTTCTGAAG AAGGGAACTAAGTCTTTAGTCTTGGAAATTATTCGATGTTTCCCGTGTCTTGATACCCATTTTCCTTGTTGGCAAAGAGT CAATTTTTTTTTTATACTAGTTTCCTTTGAATAGATAACTGATTTCCAAAGCTGATATTTCTGTCATAGTGTCATGTATT AAGTTTACCAAATAAACATTGGAAAAAACTTAGATCAAGTTGCATATATTATTTTCATCAAGTTCTTCATTCAAATAGTG ACAAGTTAATTTTGTTTTTAAACGTAAATGGCATTCACCCAAAAAAAAATTTGGTTGAATTTAAAAAATTATGAACATGT CATTATATAATTGGAAACCTTGATGTAAAAGATATAAGGAACTTGATGTAAGTTTTATCCTAAAACGTTTACCTGTAAAT ATTTCGTAGTGGTTTTACTGATAGTTTTCCTTGGTCTCCCCCAACTTCGAACTACTGGCCTATAGTTCTCAGCTACTTAT CTATTGGCATAATTACTAGCACCTGTTGTTAGTTGACGCTGCATCTCTTTCAGTAATCATATTCATATGTACTGTTTATT CCATTGCAATGGTATATAATGAGGTTTAGTTTTGCGTTGAGAAACCTCCAAACCATGGTTTTGACAAAAGCTACTACCTA TTGCTTTTGCCAAAACTAGGGTTTTGAAGATCCCTAATGCAAAACTAGTTCATGTAACTATTAGTTTCAAGCAAAGTCAA AATTAAACTTGTAGAAGTTCATCCTATGAAGGAGCATCCTCTGTTTATTTTTATTTTTTCTCTAGCTGCCAATCAAATGG TCAGTTAGTTTTTGTTGCTAGAAAAATAGCTAACCTTTAAGAAACTCATGTTGTTTGGAAGACATGCTTGTGTGAAAATA CTTAGTTTCATTTGTTTCCTACTTATTATGACTGCCCAAAATAAGCTGTTTGATCAAGAAGCCCTTTGTGCAGATACCCG AGTGGTTCATGAAGTGACAGGACCATCCGAAAAGAACTTTTTCTCCGGCACAAGACTAATCGATTCAAGGCAACCTTCAA CAAAGCAAGTAAGACCATTGTGTCAGCTTCACAAGGTTCTCAAATTTAAATTATCACCTGATTCTGAAATTCGAATTTCC ACAGCTGAGAAAGAGGCCAAATGAATTTGAAACCTAATATATGTTCAGCTTCTACATATTTTGTAGATTAACTAAGAACA TTAACATGGATACTGATTATTGATGGCTGTATACTTTGTCTTTGGTGAACAATGGATTGCTGATGATTTGTGTACAGAGA ACCTTGTATGTTTAAGGATCACTGTGTTTCTTCCAGATGAATAATTATATGTTCAAAGAGCATTTTTCAATAGGGGCCAC ATCATTCTTTGATATATATTTAAGGTCATGCCTTATAATTTGTCAATCAATAAGTTAATTTGTATTTGTACCTAAAA
CDS sequence (LotjaGi3g1v0263900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCAAATGCAACATCGCATTGTGATAATGAGGATCAAGATGAATATGTTTTGCTTGACTTGGATGGTGTTTCTGA CCTACTTGACATTCCACCAAATGCAAACTATGTTCTAACTGGCCTTGATACTTTAAACCCAGTATTGATCATTGATGACA GATTTAAGCTGATCGGGGAGTATGAGGAGACAATTGGCACGAGTATTGCCTTTACAGAACAAGATACCCGAGTGGTTCAT GAAGTGACAGGACCATCCGAAAAGAACTTTTTCTCCGGCACAAGACTAATCGATTCAAGGCAACCTTCAACAAAGCAAGT AAGACCATTGTGTCAGCTTCACAAGGTTCTCAAATTTAAATTATCACCTGATTCTGAAATTCGAATTTCCACAGCTGAGA AAGAGGCCAAATGA
Protein sequence (LotjaGi3g1v0263900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEANATSHCDNEDQDEYVLLDLDGVSDLLDIPPNANYVLTGLDTLNPVLIIDDRFKLIGEYEETIGTSIAFTEQDTRVVH EVTGPSEKNFFSGTRLIDSRQPSTKQVRPLCQLHKVLKFKLSPDSEIRISTAEKEAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 101 | 98 | 1.2E-5 | – | |
| PANTHER | 8 | 125 | 118 | 1.2E-34 | ||
| Pfam | 12 | 119 | 108 | 5.3E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription by RNA polymerase III | The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. |
Expression pattern of LotjaGi3g1v0263900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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