Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0275200 |
| Transcript ID | LotjaGi3g1v0275200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin domain protein; TAIR: AT1G53400.1 Ubiquitin domain-containing protein; Swiss-Prot: sp|Q4V8W7|UBTD1_DANRE Ubiquitin domain-containing protein 1; TrEMBL-Plants: tr|I3SV15|I3SV15_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0275200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:54434203..54438757) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTGTAACTGACATGAAATTGGTAAAGATATTTGAAGGGGTGGAGTAATATAAGGTTGGTGTAAGTATGAACTTCCCC TTTTCAAAAAATAAAATAAAGTATGAACTTCTCGCAGTGAACTGTACCCATTACCCAGTGGTTCATTGACTTGCCATCGA AGCTCCACTCATCTCCCTTTACCTTTATCTTCCTTCTCCTTCGTTCTTGTGCGTGCAGCTGTGAAACGAGGCTCTGGTTT TTCTGCAATGGGTTGTGCTGGATCTTCACAGTCCAAAGCAGATGGTGGGCCTTACTTTTCTTTGTCATTTCAACTATGTG TACGCTCGCATTGGGTTTTGCTAAATCCTTACAAAATTGATGTTCTGTTGGGGTCAAATTTTGTTATTTCCTGGGTTTTC TTTGTTTGGATACTATTAATTGTGTGAGAGTTCATGCTAATTTGAAGAAGAAGGATTTGAAATGCATAGGGCACAGCGCA TACGAATCTTTATCTTTTTCTTTCTTTCTTGGATATTTTCTATGTTTCAATTGTTATTTTCCGAGCAACTTTTGTCTGAT CGTATTCTTGATAAAGAGTCTAGATGGTCATTCAAACTTGTAATTTCTACCTTGGGCTGGGATTAATTGAGGATGGAAAA TGTTTCCTCTTGATTCCCGTGTGCAGTTGACCCTGAAATTCAATTGTGTAGCTGGAAAGGGTAAGTTAACATTAAATTAA ATAGCTTAATACTTTTGAGACTCGAAATTATTCGCATTTTTCTGGTTGGGAACCCTATGTCTATGTTTTAGTTTGGGTCT TTGATTTTTTGGTTGAATTGCATTAATTTGGTGTGGACATTTGAATGTACCAGAATGAAGCAATCCCATCATTAGCTTTA TGAATTTTAGAAACCAAAGGCAGTTAAAATGTATGCTGGGTATATTTATGAATTTTTCAATGTTTGATTCTATTGATAAT GCCTCCTTAGTCCTGTGTATCCTGACTGTTACTGAAGCCTAACATTTCATTTTCCACTTTCACCTATGTGGCTGTGTGAT CTACAACAAGTGAGCAAGTGTGAAAGGATAGGTGGAACTACTAGTAAGAATGTGTCTAGCTTGTTACTTGAGCGTACTTA TTTATCAGTTATCACTGTGTGCGTTTCTGCTTCCTTGTGTTTGAAGAGACAGTCCTAATAACCTTGATACTGTATTTTTT GCTTGCTTAGGAGCCTTCAATTGGTTCTGTATTTGCATCTGTTAATGTAATATCATGGAGGTATGAGAATCTTTACAAAC TCATGGTTTATACTTAAATTTTGAACCACACAAAGGGTATGTAAATGAGGTGCCGTAGCTTGTCATTTATTTATTTGTTT CCTTCTATGCAGTATAGAATGTTTTAGATTAAAGTCATTTTTGTTTTTGTCGTTGTTATCATTTTTGTTATTCTGTTTCT AATATTAAATGGTCAGTCAGATTTTCTTCTTATTTATTATTCAAATTCCCGTGGTTAGATTTTCATTCCTTACGTCTTCC AAAACGTGGAACCATCTTTAGTGTCTGGTTTAACAATGCTCACGTTTTAGATTCAAGTTTAATGTCATTTACATTATACA CCAATATAAATTTAAGTATTTTAACAGGGACAGAAAAAAAGATCCGAAAGCCTAAACCTTGGAAGCATCCTCAGCCCATA ACAAGGACTCAATTAATACAATTGCGTGATGAGTTTTGGGACACAGCTCCTCACTATGGTGGCCGGAAAGGTATTATCAT GATTCGATCAAGGACCATAAATGATGGCTTTATACGAGTGAATTCACTCCTTGTAGTTTGCTGTATTACTCTGAATACTT CATTTTCTTTTCTTACTGATTTAAATAAGTTATCCATAGCTTGCTGTTTTGCATCAATCTCTTCTAGTATGGTCATGTTC TGTAATATCTCTATCATCACCTGCCAAGATGTTGTACAATAGGATTGGATTGCTAATTAGTCAAGATGTAAAATGATATT AACAAGGTTACAAGTAATCCCAACCTGAACCGGTGATTCTATTATTTCATTTTGTACTCAGAGAATACATACAAAAGCTG ACCTGAGTTATGGGTTCGCATTTTTATTTCACTAATAACATGAAGAAATTTGTGAAAATGCATTTTATCAAACAAATTTT CAAAAGCTCTCTAGAACTATATATATGTGCTTATATTTCATCTAGCAATTTCAGTCCTAGTAACAAATGCTAGTGATGTT ACAGGGCCTTTAATGTTTAGCTCATAAAGACGTAATTGTGTGTTTGTATTTCTGTCAGTGCACATTCCAATGCAATTTGA ACTTGTTTTTGGACAATCCATGTCTCTTGTGTCATTGAATTTATTTTTAGCCTATAGATCATTAGCGATTCTATTTCTTT GTTGTAAATTTATTTTGTCAAACAATGAAATCCTTCCGTAAATAATGAAGTGGCAAGGCCAAGAATGATAGTACGTTCAT TGAAGTGTCATTTCACGAAAAAGAAAGTTTAGATCATATAGGCTTACAAGGTACTTTGTTGTGACTTGTGGCCAATCAAT ATGCTGGGTTTCATTTCTGCCTCTTGATTGTTTAAATTAAGTCAATTAAAGTGCACTTGTGGTTTTCTGCTTGCTAGAGA TTTGGGATGCTCTTCGAGCTGCTGCCGAGGCTGATCTAACTTTGGCACAAGCAATTGTGGATAGTGCTGGGGTTATTGTC CAGAGTTCTGATTTGACAGTATGCTATGATGAAAGAGGTAAGCCATTAGTTGATGTTGCATTCTATTATTTACCATATTC TGATCAGTCTTCTTTAATTGAAAGTTGAAAAACCTCAATTGATTCAATTTCCCTTGATTTTAAGAAGTTAATGAAATTGG AAGTTACAATGAAAAGCATCCAAGAAATTGTGTGCAATGTGGGTTTCCAGTTGCACTTCCATACTTTTCTCATTCAACTG CGGTCCAGACCTATCTTATCACGTGATACCCACCTGGATTACCTTTATCATGTGTCACAATCAAAACTTCTTTTTACATC TCTTATCCTGAATTTTTTATTACCTAAAAACAAAATGAGAAAACCCTTCAAACTTGGTTGCAGGAGAAATGCAGTAAAAG AGTAACACTAGCTTTTAGTCTGAGATTCTGTGATAGTGAAACAACTGCACCTTGTGTTTATTCTTATTCTGATTCTGCTG CAATACTTGTTTTGCAGGAGCTAAGTATGAGCTACCCAAGTACGTTTTGAGTGAGCCAACTAACCTGATTCGTGACGATT AATGATTAAATAGTAACATTCATGGCCATGGGAAACGGACTGTAAATCATGTATATTGTTCACTTTGATAGGGTAGTAGC AACTGTTTTTCCCTTTCAATCTGTTGAACAAATGTTTTTATGTCTGCTCTGTATCAGATGACAAGTATCCATCCCTCTCT GGCTTTGTGTATTTTACATACCAGATGAGTGAATTCCAATACGCCAATTATGAGAAACATTAATTTCTGTTGTAATTTTT TCTTTTTAAATTCATCTAGCTTCATACTTTCATTTCATTCGGAAAATGTATATCTTATCTCTGTTAAGTTCAAACGCATC ATATTGTTTTAAAATCTAATTTTGATGAATAACAATTTTTATCTAGAAGCATTTTAATGAAAGCTAAGCTTCTCATTTAA TTTGAATTCCAGGATATATTCTTTTGAACAAAGTACTTCAACGTCAAATCACTTCTAAAGGAAAAAAAATTAAAATTCGC AAGACCGTCTGCCACGCATAGAACTCAAGTCAAGGCACATTTGCTCCTGATCGTCCAATGTCAGCTCATCATTCAGAAAT GTTGAAGACAAAATCTAGGCACCAAAGACATAGTCAGAACACAACCATTTGTTAAGGATTCAAAAAGAGATCACGTGAAG ATTTTCTCTTTCCTTAAAGTGCGCTAACCAACGACGGAAAAGGACAACGCGTCAAGATCAAACTTGCTGGAGTTTCTCTC ATTTCTGAAGAGTAGTTCAAGTCTATTGCCTGCCACCTACTAGCTGACAAACATCACCTTTTCAGCTAAAGGATATACAT GAACAGTAGCATGCATTTAATGCATCTACCAACCGAAGGCATTTGAATCAACGGACAGATTTCATCTCTCAACGGCTAGA ACAATGGTTGAATTTCTCTCACAACGGCTACAACCCTAGCAAGCGAGTATTTAAGGCAAAGCTGAAGAATGAAGCAAAAA GAGAATCAACGCTGAAAGAACAAGAACTCAAAGCATTTAATTTTACATTCTTCAAAGCATTCAAAGCTCCAAAAGCTCAA AGCAAAAACATTCCTAAGTGTCAAACTTACTCACCATTTTTGCAAAGTGAAAGAGAGAGCCAACAACCTTAAAGAGTCGA ATCTCTTCATTTAATTCTCCCTTAGATTTAGAACTCTTGAGTGATCCAAAGTCAAATGTGTATCAAAATACTTAGAGTTT CAGTGTCATATATTCTTTACCATTACTCTTGTAAGAAGAGAAGCCTTGTAGAGTTAAACGATCTTGAAAAGGTTG
CDS sequence (LotjaGi3g1v0275200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTGCTGGATCTTCACAGTCCAAAGCAGATGGGACAGAAAAAAAGATCCGAAAGCCTAAACCTTGGAAGCATCC TCAGCCCATAACAAGGACTCAATTAATACAATTGCGTGATGAGTTTTGGGACACAGCTCCTCACTATGGTGGCCGGAAAG AGATTTGGGATGCTCTTCGAGCTGCTGCCGAGGCTGATCTAACTTTGGCACAAGCAATTGTGGATAGTGCTGGGGTTATT GTCCAGAGTTCTGATTTGACAGTATGCTATGATGAAAGAGGAGCTAAGTATGAGCTACCCAAGTACGTTTTGAGTGAGCC AACTAACCTGATTCGTGACGATTAA
Protein sequence (LotjaGi3g1v0275200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCAGSSQSKADGTEKKIRKPKPWKHPQPITRTQLIQLRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGVI VQSSDLTVCYDERGAKYELPKYVLSEPTNLIRDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 114 | 114 | 1.6E-68 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 114 | 114 | 1.6E-68 | ||
| Pfam | 15 | 113 | 99 | 1.3E-35 | ||
| Gene3D | 31 | 104 | 74 | 8.1E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0275200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…