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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0277300 |
| Transcript ID | LotjaGi3g1v0277300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein CONSTANS; TAIR: AT5G59990.1 CCT motif family protein; Swiss-Prot: sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3; TrEMBL-Plants: tr|A0A0B2QG08|A0A0B2QG08_GLYSO Zinc finger protein CONSTANS-LIKE 3; Found in the gene: LotjaGi3g1v0277300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:55058482..55061476) extracted from Lotus japonicus Gifu genome v1.2.
GTGTATTTCATTTCATTTCATATATATAATCCATAAATGGTACAACCTTCTTGGCATCTCGCATCTGCATATACTGCAGT GAGTGTACCTTCCATCTTCAACATTCACTCACTCTTCTTCATTATTCCAACTAGCTAGTAGTACTAGTACCTACCCACTA ACTAGAACTGCTTCAATTCCTTCCAATTAGCATAATCACCATGTATAATGCACACTACTCTAACATTCCATTATCATCAC CCTTCCATGAACTCACCGAGTTCGACACTCTCTCCCAACTCAACAACAACTACAACAATAACTGTTGCAGCAGTGGTTAC AGCAGCAGCTACGGTGGTTCTCCCACCTCTGAGGCTCAGGCAAGCCCCACCTTGATGCAGAGGAGCGTTAGCAGTCACTC CCTCCACACCAACACCAAAAGTAACAATAATGGGACCTGCCACCACCCTTTTTCTGCTTTCTTTGCTGAGTTGCTAGACT CCGATCAGGACACTCCGGCGGTCAGGAGAGTTTACAGTGCCGGTGATCTGCAGGTACAATTTTTCTTTTTCTTTTTTGTA ATGTACATTTCTCACTATCCTTGTTGCCAAATGCCATATGATTTTTACTATCTGGGAGTGAAATTCTGTTTTTAATGACC ATGCCTAATTCTTTTTTATACATTGAAATGATAAATACCTGTCTAAATTAAAATCAATTTTGGGAAAAACTTTATTTTTT GTGACATCTAATGTTCAAATATTTTGATACATGTGAGGCTACAACATTGTGTGTTTGGTTTCCCCTTCGGAAACCCTAAA TTCAATTCTAGTAGAGCAAAATCAATTCTTGAAAATATTATGACTAGAGTTATTTTGTAATATGATTGGATTCACATTCA AATCTTTCAGAACCAATTCCTCTCCCATAAAAACAACTAGGAGTAGCTTCTCTTAGAATTACCGATTCTTGATCCAACGT GAAAATTTATCGTGTATCAAAACATAACATGCACCAATTGAAATTAATAGAAGTTAGAAATAGGAGTTTTTGACTTTAAC ATTATGAATATTGAGATTTTACAGCTGATTTTCAGAACATAACAAAAATCATTTTCATAAATGTATATAAACATAAATTA ATTCAATTTCAACTCACTTTTATTAAAATCAATTTTACCAAAATGAATGGTGACAAACCAACCAAACATACACATTAATC ATTTTGGTAAGTACTTTTGCCAGCAGAGATTAGAGCCAATTATGGTCGGTGAGATTCTTTTTGTTTCTGTTTGTTTTATT GCTATATGCGCATCAATTATTTAATAATATTTTTACTTCAACATGTGATGTTTGTGCAGAGAATTAATGGAATGCAACAC GGTCAAAGTCATCATCATCACTCGGACAGTCCATTATCAAGTGAAAGCAGCATGATCATAGAAGGGATGAACAGAGTTTG TCGATACAGCCCAGAGGAGAAGAAAATGAGAATTGAGAGATACAGAAACAAGAGGAACCAGAGGAACTTCAACAAGAAAA TTAAGGTTCACACACATGTCATTTTTATCATATTTATTTTCAGTAGCTTTCTATATTTCACGTTTTAGAAATAAAAATCT GCTCCACCAATTTTTAGACACTAGAATTATATATATTCCACCAAAATATGACAAATGTAATGGACAACACTGTACTGATA GAAAAATCACTGTCTGATCAGGCCCCCTTTTTGAAATTTGCTACATGAACTATGAACTATCATTAAAATCATATCCAAGA TTGAATTGGAAGCTAAGGATACAGTGAAAAGATAATACATTTGACAAAATTCTGATTTAAAGAAGAAGCAACACATGTTC AATCAAATAGGAGTATAGGACCGTATAATTTGTTCCACAATCTCCATGTCCTTTGCTTGGTAGCCCCCTTTTGGTCACAC AAAAGAATATTTGCAAATAATTGTGAATATTAGGTGAATTTTAGTATATTGAAAATTTGAAACAGGTCCAGAATTTTGTT AAGTATGATATGCTCAAGGATTTTCCTTATTCTCTAGGCTACTAACCCCATACCATAAGAGATAAGACATTGGAGAAAAG GGTCAATAAGACATGTTAGTGTGTCTCTAGATTTAAACTGAGATCAACTTAAAAACACGTTCAAACTAATGAAAGCAACG AATTCATGTTTGCTTTCTTGAAATTCAGGGGTTTTTTTTCCACTGAAATAGTCTTGTAAGTTGTAACACATGCGAACTGC AAACTAAACGCACGCTAATTAGCATTTAGCCATATACCCTTTATATTACTCTCTATTCTCCAATTCATAGTGTACTTTAT AATGGTGCACCAGTGTAAGTTATGCAAATGTATTAATTGCTTTAAAATATGAACTTATTTTCTTCTGGGAATCAGTATGC TTGCAGGAAGACATTGGCAGACAGTAGGCCACGTGTCAGAGGACGGTTTGCGAGGAATGATGAAACTGACCAGAAACCTA CAGTTCAGTGGAGCCACATTGGTGCTGCAGAGGAAGAGGATGAGGAAGATGAGAGTTGGGTCAGCATCTTTGATTCCATA GTTGCTGCAGCAAATCTAACTCAGGAATCTCAAGCCAGTTCCTCCTTTGGTCTATTGTATTAGCACAATTGCATCTTAAT TTCATAAGAGCGTGTCTGGAAATGCTTCTGTAATTCACTTAAAAGCCAAATCACGTCCGATGAGAAGCTTTTGAATTTCA GAATTAATTCTGATTAAGAAGAGGAGTTCATCCAAAAATGATATAATTAAGTTTAGCTAGTCTATTTTTTGTGTTTGCTT TCCTTGTCAAAGTAATGTGATGCACTTTAGTTTAGATAAAAGTAGTAATGTAAATATATTTATTTGAGTCATGTCAATGT GACCATGTGCAATTTTTAGACTTTTAAACCTAGGGTGATGTTTTTGGGTGCCCTTTATCTTCTTTGTATATGGCTTAGCT GCAGCAATATATTATTGGATCAGAACTTAAGTCTA
CDS sequence (LotjaGi3g1v0277300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAATGCACACTACTCTAACATTCCATTATCATCACCCTTCCATGAACTCACCGAGTTCGACACTCTCTCCCAACT CAACAACAACTACAACAATAACTGTTGCAGCAGTGGTTACAGCAGCAGCTACGGTGGTTCTCCCACCTCTGAGGCTCAGG CAAGCCCCACCTTGATGCAGAGGAGCGTTAGCAGTCACTCCCTCCACACCAACACCAAAAGTAACAATAATGGGACCTGC CACCACCCTTTTTCTGCTTTCTTTGCTGAGTTGCTAGACTCCGATCAGGACACTCCGGCGGTCAGGAGAGTTTACAGTGC CGGTGATCTGCAGAGAATTAATGGAATGCAACACGGTCAAAGTCATCATCATCACTCGGACAGTCCATTATCAAGTGAAA GCAGCATGATCATAGAAGGGATGAACAGAGTTTGTCGATACAGCCCAGAGGAGAAGAAAATGAGAATTGAGAGATACAGA AACAAGAGGAACCAGAGGAACTTCAACAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCAGACAGTAGGCCACGTGT CAGAGGACGGTTTGCGAGGAATGATGAAACTGACCAGAAACCTACAGTTCAGTGGAGCCACATTGGTGCTGCAGAGGAAG AGGATGAGGAAGATGAGAGTTGGGTCAGCATCTTTGATTCCATAGTTGCTGCAGCAAATCTAACTCAGGAATCTCAAGCC AGTTCCTCCTTTGGTCTATTGTATTAG
Protein sequence (LotjaGi3g1v0277300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYNAHYSNIPLSSPFHELTEFDTLSQLNNNYNNNCCSSGYSSSYGGSPTSEAQASPTLMQRSVSSHSLHTNTKSNNNGTC HHPFSAFFAELLDSDQDTPAVRRVYSAGDLQRINGMQHGQSHHHHSDSPLSSESSMIIEGMNRVCRYSPEEKKMRIERYR NKRNQRNFNKKIKYACRKTLADSRPRVRGRFARNDETDQKPTVQWSHIGAAEEEDEEDESWVSIFDSIVAAANLTQESQA SSSFGLLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 230 | 214 | 1.6E-85 | – | |
| PANTHER | 17 | 230 | 214 | 1.6E-85 | – | |
| ProSiteProfiles | 152 | 194 | 43 | 15.636 | ||
| Pfam | 153 | 194 | 42 | 5.5E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi3g1v0277300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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