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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0283100 |
| Transcript ID | LotjaGi3g1v0283100.5 |
| Related isoforms 7 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin; TAIR: AT3G12110.1 actin-11; Swiss-Prot: sp|Q05214|ACT1_TOBAC Actin; TrEMBL-Plants: tr|I1M4W2|I1M4W2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0283100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:57001709..57003941) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGACTCCGAGGATATTCAGCCACTCGTCTGTGACAATGGGACAGGAATGGTTAAGGTAAAATTGCATACATGGAT GATTTTATTTCCAAGATTTTTATTGCAATTGTGACTAGTACCATTCAATTTCCACTATTTTGCAAATGTTTAGGCTGGAT TTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTTGGTCGACCACGTCACACTGGTGTGATGGTTGGCATG GGCCAAAAAGATGCATATGTTGGGGATGAAGCTCAGTCCAAGCGAGGTATATTAACTCTGAAATACCCCATTGAGCATGG TATTGTGAGTAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTTGCCCCGGAGGAGC ACCCGGTTCTGCTCACCGAGGCACCTCTTAACCCGAAGGCCAATCGTGAGAAAATGACCCAAATCATGTTTGAGACATTC AACACACCTGCTATGTATGTAGCTATCCAGGCTGTTCTGTCCCTCTATGCCAGTGGGCGTACAACTGGTTAGTCATTCTC TGCTTCAAGAACAATATTATGTTGCATACTTGCATCTAGTTTACATTCTAAGAAGATTATGCTGGCTAATGAAAATAAGC AATGCTCTTCAAAGTCCAGTTTGCTAATGTGTGGTCCGCTAAGATGGTTTTAAATGGTGGTCAGCAATCGCAATTGCAGT TCTAATATCAAGTTTTTTTGAGCCCTTGCTGCAATATCAAGGTTTTATGAGTCCTTGCAACTGCATCGTGACACATTGGC TGCATTTGTCTACAGTTTCAAGGATTATGATACAACTGTATGACCGCAACCGCTATTTAAAACTATGCTAGTAAAGTTTG GGAAAAAGAAGAATGTAGAGCAAATTATAGGATTTGAAGATTCAAAATTCCAAAATTGTGCATGAAAACATTATCATTGA TAATCTGACTTGAAAACAAGCAATGCTCTTGAAGATCAAATTTGCCGATGTGATACATGGAAGTGTGAAGTGAAGCTAAC ATGGTTTTAAATAAATTATGGCCTGCAACACAATTGCGGTTGCGTATATCATGGTTTTTGAGTCCATGCAACTGCATCGT GACACACTGGCTGCATTTTATATAATATCAAGGATTGTAATACAACTAAAACTGCAATCGCAATTTAAAATCATGCTAGC TAGTTAAGCTCAGGAAAAATTAAAGGATTTGAAGATTCAACTTTGGTTATTTATGTGACTATTTTAAGCTTAAATTGTGC TTGAAAACTCTACATCATTTCTAATCTAACTTGAAATAGTTGAGCTGATGTTTTCAAGGATGTCTAACTTGGGTTGCTTC TGTGTTATTAATTTGTGCAGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCACACTGTGCCCATCTATGAAGGGTATG CCCTCCCTCATGCCATTCTCCGTCTTGACTTAGCAGGGCGTGACCTCACAGATGCCCTGATGAAAATCCTGACCGAGCGC GGTTACTCCTTCACCACCACAGCCGAGCGTGAAATTGTGAGGGACATGAAGGAAAAGCTGTCTTACCTTGCCCTTGATTT TGAGCAAGAGCTTGAAACATCACGAACCAGCTCCGCTGTTGAGAAGAGCTATGAGCTCCCAGATGGACAGGTCATCACCA TTGGCGCCGAGCGTTTCCGTTGCCCTGAAGTTCTCTTCCAGCCATCCATGATTGGAATGGAAGCTGTTGGAATCCATGAG ACCACATACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGGACTTGTATGGAAACATAGTCCTCAGTGGTGGCTC TACCATGTTCCCGGGTATTGCTGACAGAATGAGCAAGGAAATCACCGCGTTGGCCCCCAGCAGCATGAAGATCAAGGTGG TTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATCGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGGTAAAT GTTTTCTCTTGATTCTAATCACAAAATTAATTTGTGTAGCGAAACTAATAACGTGTTTAGACTTACAATGATCACATAAT CCAAAGCACAACAATTTCAAAAGCTGTAGTTTTTCACGGAAGTGATTATGAGGCTGCAAACTAGTGCAGAACTAGACACT ATAAAGTCATATTGGTCTTGTCTCATGCACATTATGAAGAAACCATGCTTGTGATTGTCTTTATTTGTTCTAG
CDS sequence (LotjaGi3g1v0283100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGACTCCGAGGATATTCAGCCACTCGTCTGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGA TGCTCCAAGGGCTGTGTTCCCTAGCATTGTTGGTCGACCACGTCACACTGGTGTGATGGTTGGCATGGGCCAAAAAGATG CATATGTTGGGGATGAAGCTCAGTCCAAGCGAGGTATATTAACTCTGAAATACCCCATTGAGCATGGTATTGTGAGTAAC TGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTTGCCCCGGAGGAGCACCCGGTTCTGCT CACCGAGGCACCTCTTAACCCGAAGGCCAATCGTGAGAAAATGACCCAAATCATGTTTGAGACATTCAACACACCTGCTA TGTATGTAGCTATCCAGGCTGTTCTGTCCCTCTATGCCAGTGGGCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGT GTCAGCCACACTGTGCCCATCTATGAAGGGTATGCCCTCCCTCATGCCATTCTCCGTCTTGACTTAGCAGGGCGTGACCT CACAGATGCCCTGATGAAAATCCTGACCGAGCGCGGTTACTCCTTCACCACCACAGCCGAGCGTGAAATTGTGAGGGACA TGAAGGAAAAGCTGTCTTACCTTGCCCTTGATTTTGAGCAAGAGCTTGAAACATCACGAACCAGCTCCGCTGTTGAGAAG AGCTATGAGCTCCCAGATGGACAGGTCATCACCATTGGCGCCGAGCGTTTCCGTTGCCCTGAAGTTCTCTTCCAGCCATC CATGATTGGAATGGAAGCTGTTGGAATCCATGAGACCACATACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGG ACTTGTATGGAAACATAGTCCTCAGTGGTGGCTCTACCATGTTCCCGGGTATTGCTGACAGAATGAGCAAGGAAATCACC GCGTTGGCCCCCAGCAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATCGGTGGCTCTAT CTTGGCTTCTCTCAGCACTTTCCAACAGTATTGGTCTTGTCTCATGCACATTATGAAGAAACCATGCTTGTGA
Protein sequence (LotjaGi3g1v0283100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSN WDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLSYLALDFEQELETSRTSSAVEK SYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQYWSCLMHIMKKPCL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 359 | 356 | 8.8E-253 | – | |
| PANTHER | 4 | 359 | 356 | 8.8E-253 | ||
| Pfam | 5 | 358 | 354 | 9.6E-135 | ||
| SUPERFAMILY | 6 | 155 | 150 | 9.07E-66 | ||
| SMART | 7 | 370 | 364 | 4.7E-214 | ||
| CDD | 10 | 183 | 174 | 3.3133E-18 | – | |
| Gene3D | 10 | 358 | 349 | 5.7E-178 | – | |
| PRINTS | 28 | 37 | 10 | 2.0E-56 | ||
| PRINTS | 51 | 62 | 12 | 2.0E-56 | ||
| ProSitePatterns | 55 | 65 | 11 | - | ||
| PRINTS | 63 | 85 | 23 | 2.0E-56 | ||
| ProSitePatterns | 106 | 118 | 13 | - | ||
| PRINTS | 117 | 130 | 14 | 2.0E-56 | ||
| Gene3D | 140 | 340 | 201 | 5.7E-178 | – | |
| PRINTS | 142 | 161 | 20 | 2.0E-56 | ||
| SUPERFAMILY | 149 | 358 | 210 | 1.86E-86 | ||
| Gene3D | 182 | 274 | 93 | 5.7E-178 | – | |
| PRINTS | 238 | 254 | 17 | 2.0E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0283100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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