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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0287600 |
| Transcript ID | LotjaGi3g1v0287600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 28S ribosomal S34, mitochondrial; TAIR: AT5G52370.1 28S ribosomal S34 protein; Swiss-Prot: sp|P82929|RT34_BOVIN 28S ribosomal protein S34, mitochondrial; TrEMBL-Plants: tr|I3T7Y6|I3T7Y6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:58136088..58141326) extracted from Lotus japonicus Gifu genome v1.2.
AGGTCAACCTGGGCAGAAACATAAGGTATTTATTTTTTTGTAATAACTTAGGCAGCCTGGCCCAGCATCCTCAACCAAAA AAACAAAACTGCCCCACCCACCCGATGACCCATCCCATCTCTCTTGTTTCTTTCACGATTTCAATTCTTCAGCCGCGCAC ACACACTTTCTCCTCCTTCCTTCGTCCACCCGCCGCCACCCGCCGCCGTCGATCCTCCCTCCTGCTCGCAGTCGCAGGTA CCAGTTCTTCCAATAGTTCTTTTCCATTGTCCTTGTTTAAATTAACTATCGAATTCTATGATTTATTACAACGTTAAATG TTTGTGGATTGTGGAAGAAAGCAAATTAAGCTAATGTAATGATTCATTTCTGGCTTGCTGGTTTTTGCTATCTGAGGCGT GTTGGGGTTTGTCTATTGGTGTAGCCCTTGTTCTCCCTTTTAATACAAACTTTGCTTATTAAAAAAAAACCTCTAATTCT AGCTATAGCTAATTGAGCTGTGTGATTTGCTAACATTTAATTTAATTTTGCTTGTGTTTTGTCAAGATCTCTAAAGTTAA CAAGAATTTGCTGGTAAGAAAGCACTAGAGACTATTGTAATTGATGTTTCAACATGGCCTGCTCCTGCTGGAATCTTCCT TTTAGGAATGCAACTCTTAAAGAGAACTTGTCACCTCTGCTTATTGAAAGTGGAGTATCTGTTGATGAGTCTGCTTCTCC TGTGAGCATCTTTTCTTCCTCATAATCAGTCTACCCCATAAGGTTATTCATGATTCAGATATTTTTCCTGCCCCCTTAAT AGTGTTAGCCTGTTAGGGGTGAAAAACTGTTTCTTCCTTAAAGTTCTCGGTAACATCCCTCTCATTGTTTCTCTAGGAAG CCCTCATCCTCATTCAAACAGAGTTGCTATTAGACCCAAAGTTCTTGCTTGGGCTTTAACAACTTTACCTAAAAAAGTTT TCTCCTTCAAGTTTATTGAGTGCAGTTAAGTTACGGAGACATGACCCTCTTGATTGTGTACCATTCTGCCACAGTTAATC CAGACGCCTCTAGCTTAAATAGGCTTATAGATGTCGGACTATCACCAAAAGTTGAGGAGTCAATGTCAGTTGTTAACAAT GTGAATTGGCACAGAATTCCTTGGAGCAAATCTTGCAAGGATCTTCTCCTTCTATCGATCCTCCTTATAGAACTACAGCT CCATCAGAAGGATCTTCTCCTGTATGGATCCTCCTTCTCTGCCTCCATTCAATGCATTTAAATGTCTTGCCAGTTTATAA CCTGGAGTTCCAGGGAAGTTCATATTGAAGCCAACGAAATTTAATTGGCTTGACTTATAGAGGTGGTAATGAATTCGCCT TGCCCTATTTTTTGTGTATTATGTACTACCATTTACCACCTAGCTGTACTGGTTTGTTTTTTGATCTTGCCTTTGCTCAT GAAGAGACCGTAGGCCTTCACCACACCCTGGTCGGAATTGCGAGAGCAATCTAACACACCAAAAAAATGTTCTTCCCAGT TCACATTAATTGCTTGAGTATTCTTATTAGCCAATTCCTGAGTGTACCAACTTTATGGCTTGCTTTCAGAGGAGGCGGGC TGTAGCTGAAGAACAAGATGGACTGTGGAGGCATATAAGAATGAAAACAGACATACAACAGCTTATATTTAAAATGTCTA AGTTGGAAATTGTGGATTCCTTATGTTACAGAGAAACGTCTACCTAGAGCAATACATGTAATGTACCCTGATGCAGTCAA TTGATGATGCCTGCAACTTATTATTTTCAAAAAAAAAACAAGAATCTATTTCCTTTTGTTAAAATACAGTTTATATATCT ATGACTTTTCCATGTTACTTTAACTGATTTCACACTCCTCAGGAAAAATGAATTAAGGCTTGCTCTGTCCGTTTGTCATA TAGTTCTAACAGCCCTGTCTTGAAATGGAACCCAAGTTAGCTATACTTTTGTTGGTAAAATAGCAAGTCTTTTTTATTTC GGTTTATAACTATTTATATAGTGGCACATGTGGATTTGCGGTTAAAAAATTTCCCCAGGCTTCCCAAAATCTCTGGTTCT GTCACTGGTTGTAACTTGTAACATATAGTAGGATCTTTTACTGGACCCTTGGAAGAGGTGGTCAGACTATTTGGGGCTTC TCCTTTGTGTTATTTATTGAGTGAAACTATATTTAAACTGTCCAATATTTATAGTAGTGATTTTTTGTTCTTTTTACTCT TTGGGCAGAGATAGAGAGGATTCTAACCGAAAACAATGGCAAGGGCATTGGGTAGCACAGTTGATGGACTTCGAAACTAT TCCTTACTCAGATTTTCACTTAGCTTTATCAGAACTCTTTCTACATCTTCTCCATCATCTTCTGCTGCTGCTGCTGACAC TAGCAAACCTAAGAAATCAAAGCGAAGAAAGAAGAACTTGTTTGAGGTGGCTCAATTCTTACCTAACTGGGGAATCGGCT ATCATATGGCCAAGACTCACTGGAAAGAAATTACTTACGAAATCACAAAAATAAATCTCTACAAGGTCTGTTTTTATTAT AATTTTGTTCTACACATTCGTTTGTTTTCATCAGAATTCAACTATTTTCCATGCTTATTTCACAACTATGCCCGGTATTT CCTCCTCCTTTCTCATGAACTACAGAGTCTCATTTCTATTTGTTATATTTTTTCCAGGATGGGAAACATGGCAAGGCATG GGGCATTGCTCATAAAAATGGTTAGTTAGTCTTGTAACTTGCATCAGCATTATTTTTCACTTTTTATTGTTCTGTTTTTC ATTTTATATTTAAGTTTCTTATGCTGTGCGAAGCATATATGCTAACAGGTGATTCAATAAGAAATCATTACCTCTTTTTT TACATTCCTGGGTGGATTTGCGACAAATTCTGTTGGTTGAAGGCAGTCATGAAGTTGGGACATTAAGCTAGGCTAAGAAT GCCTCTATGAATTCTCATATATCAGTTTGCCTCATTGGGCATTTAGGACAATCGAAGTGCTACCAAACTGACTATAACAC TATTTTCCATACTCTTTTTAGTTGGTTGAAGTCTATGTGGGTCCCACAAAATTGGTAGTGGACACATTGTAATTTAGTGG ATCCCACATTAAGTTTAATTAATAAAGGAGAGAGCATTGATAGCATTTCTCTTTAGGACAATCAATCTATGATACACTTT ACGACAGCAGAGATTTCCATAATCAGTAAAAAACTAGACCAGTGAATAATGTAGGGAGTCTCTTAGTGAGGACTAATGAA GTGATTTGAGTTTCATCTGATTGGACAATCATCATTCATCACTACTTTTTTGAGTTGCAAATCAAAACATATGTGCGTCT ATGGCATCTGTTGCGTTTTTACAATATTTTCTGCTCGTCCCTGTTTCTGAGCAATATTGTTTGTCAATATTTCTGATGAT ACTATGTGGTGCTGTGGATTCTGAAATATACTTTTGTGTGCGTCTATAGCATCTGTTACGTTTGTGTTGTTTACGGGTTC ACATAAGGAGACTTTCTGTTATTTATTAGATTACGGTTGCAAAACAAGATGTCAAGAATGAAGTCGAGTAGTTCTTCAAG AATGCTGTTATGTATATTCCACCACGCAAGTGGTTGTTACAGGTCTAAAAAAAAATCTGTCACTTTTGATTGAGAAATCA AGTAGGAGCTTGAACATGTTTATGATTTTGAATACTTTCTTCAGTTGTATGTTGTCCACTTTCTCTATTTCATTCATGTT CCATGTCAAATTATTTATATCTAGGTGTAAATCTCAAATTTTTTGCTGACATGATAATTGTGTATGTGTTGCTTATGTGT GTAATTGTATATGGCATTTGATAAATTCTTGCAATGAAATTTGTTGCAATAAGCACTATGTTCCCAAAGCAAATTGTATA TTGTATGAAGGATTAATCGCATGAGTAATGAGACATTTTTCAGTACTTGTTCTCTAGCTTGCGTTGATATCAACGAAATT GTTGCAGGCTTGCCAATTGCAGATCCAAAGAAGATCAGTGGAGTTCACAAACGTTGTTGGAAGTACCTCCCAGGTGTGGT AAAAGCATCAGAAAGCTCACCAAACTTAACAAGTCCTGCAGACAGTGGCGAAAAAGTTGAAGTCCTAGCAAGTTGATGCT TACTAGTGACTTTAGGTTTTAGGTTCAACTTGATTTTCATTTGGCACAGTTGTTTTTTACTGTGGTAGAATTTTAGTCAA CCATAAAATATACCTTCACAACCATGTAAGGTTCTCGTGCTTCTTTCTTTTAGATTTTTGATTGAAATGTGGTTTAAGAG AGTAAGCTGAATGGATTTAAATTTTCGGCTTAATTGCACTTTTGCTCCCTTATCTTTCACCGTTGTGCGAAGTCCCTCCC TCATGTTTAAAATGAGCAGATTTCCTCCCTCATGTTTTAATTTGTGCTACCGTTAACTTTCCATCCAATTATTAACGGGA TTGTTATTTTCACCTCCTTCTTTTACTAACCACACCCCTCAATCAACAATATAAAATAAAGAAAAAAATAAATGAAATAA GTTAAAAACAGAAAAAATATATATTTTTATAAAAGAAAAAAAAACCTTCATCTCTCTTGCACATAATTTTTTCCATCCAA TAATTTTTTTTTCCAGAAATCATGTAAGTGGTGGAGATAGTAAAAAAGGGGGTGAAAATAGCAACCTCTGTTAGCTTTTA GACGGCTAACTAACGGAAATGGTGAATCTTCACATTTTAATACATGAGGGAGGGAATCTGCTCCTTTCAAACATAGGGGA GGGACTCCGCACAACGGTGAAAGATGAGGGAGCAAAAGTGGCCTAAATTTTCGTTCTTGATCTGTGCTTCTCTTTGGCCT TATATTTAGTAAATATTTATATTCAACGAGTTGTTAATTGGTTTGTTAGGTGTAGATTTGGACGTTAGAGTACGAATTTG ATTCTGCAACTAAAACCTTGTTCATTGTATGATATCCGTAAGTGATGCTCATTAAATTCATACGTATAACATTATCAAGC ACAGTTAATAGAAAATTGTTGGGTTATGATTTTAAACTAGTACTATACTGGTGCGGTGATTTTATGTTGAGAATAGTGTA CTTATTTTTAAATCACTTCTTATATTTCACAGTAACTCATAAGCTTTACATAATTATTATATGATAACATGACTACATGA GTGACTATTATATAAAGAAAACTTAGAGCTCGTTTGGCA
CDS sequence (LotjaGi3g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGGCATTGGGTAGCACAGTTGATGGACTTCGAAACTATTCCTTACTCAGATTTTCACTTAGCTTTATCAGAAC TCTTTCTACATCTTCTCCATCATCTTCTGCTGCTGCTGCTGACACTAGCAAACCTAAGAAATCAAAGCGAAGAAAGAAGA ACTTGTTTGAGGTGGCTCAATTCTTACCTAACTGGGGAATCGGCTATCATATGGCCAAGACTCACTGGAAAGAAATTACT TACGAAATCACAAAAATAAATCTCTACAAGGATGGGAAACATGGCAAGGCATGGGGCATTGCTCATAAAAATGGCTTGCC AATTGCAGATCCAAAGAAGATCAGTGGAGTTCACAAACGTTGTTGGAAGTACCTCCCAGGTGTGGTAAAAGCATCAGAAA GCTCACCAAACTTAACAAGTCCTGCAGACAGTGGCGAAAAAGTTGAAGTCCTAGCAAGTTGA
Protein sequence (LotjaGi3g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARALGSTVDGLRNYSLLRFSLSFIRTLSTSSPSSSAAAADTSKPKKSKRRKKNLFEVAQFLPNWGIGYHMAKTHWKEIT YEITKINLYKDGKHGKAWGIAHKNGLPIADPKKISGVHKRCWKYLPGVVKASESSPNLTSPADSGEKVEVLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 39 | 39 | - | – | |
| PANTHER | 1 | 150 | 150 | 6.0E-67 | – | |
| PANTHER | 1 | 150 | 150 | 6.0E-67 | – | |
| MobiDBLite | 31 | 52 | 22 | - | – | |
| Pfam | 53 | 126 | 74 | 1.9E-9 | ||
| MobiDBLite | 133 | 153 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Mitochondrion | A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration. |
Expression pattern of LotjaGi3g1v0287600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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