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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0287900 |
| Transcript ID | LotjaGi3g1v0287900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B'; TrEMBL-Plants: tr|G7IUB4|G7IUB4_MEDTR Polyadenylate-binding protein RBP47B; Found in the gene: LotjaGi3g1v0287900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:58184413..58188639) extracted from Lotus japonicus Gifu genome v1.2.
GGTCATGGGAGAGATGAAGGAGGTGGCAGCTAGGGTTTTGTTAGAGGATGAAGGTGATAATGAAAAAGATTAGAATAAAT ATTGTGATTAATAAAATAAGTATTTTGAATTTTTTAAAATAAAAAACCGGAAAACCTGCTATAAAAGGTCAAAAGGGGTT TGTGCAATCTTACACAAGTTTTTACATGGTATATTAAAGGCCTCCTTATTTTAGAAGTGTAAAACAAAAATAGACCGAAG AGGGTGTGTGTTGAGCTGGTGGTGTTTGAGCAGAGCGAACATGGCTTCGCAAGCTCCTCAACCTCAGCCTCAGCCTCAGG CTCAGGCTCAGGCTCAGGCTCAGGGATATCATCAACATCATCATCACCAACCTTCCTCCATCGAAGAAGTTCGAACCCTC TGGATAGGCGATTTGCAGTACTGGGTCGACGAAAACTACCTCACTCACTGCTTCGCTCACACCGGCGAGGTAAACACTCC ACTCCACACTACCCACCTCACCATTCATTCATCAACCACCATTTCACCACTAACCCACAAAATAAAATCCAAACTTTTTT CTGGGTTTTCACTTTCACAGGTAGTTTCGATCAAAATCATTCGCAACAAGTTAACAGGGCAACCAGAGGGTTATGGTTTC ATCGAGTTCGTTTCTCACGCTGCAGCTGAAAGGGTTCTTCAGAGCTTCAACGGGACTCAGATGCCCGGAACGGAGCAAAC TTTCCGGCTGAATTGGGCTTCATTCGGAATCGGAGAGCGTCGTCCTGATTTGGGTCCTGAGCATTCCATTTTTGTGGGTG ATCTTGCTCCTGATGTTACTGATTATCTGCTTCAGGAGACTTTTCGGGTGAATTACGCTTCGGTTCGGGGTGCTAAGGTT GTGAATGACGCTAACACTGGCCGCTCTAAAGGCTATGGGTTTGTCAAGTTTTCTGATGAGAATGAGAGGAACCGTGCTAT GGCAGAGATGAATGGTGTTTATTGCTCTACTAGGCCTATGCGGATTAGTGCTGCCACTCCTAAGAAGACTGCTGCTACTC AACAACACCCTTATGCTGCTGCTGCACCTGCTCCGAAAAGTACACTTGTCTTTGATTTGTTAATGATAGTTATCAATGCA ATGTGCTTTTCATTGTGTCAAACTGCAAAAATTTATGCCTGTCTGTGCTTAACATCTTTGGCATTTGTCATACGGACCTG ATTCCTAGTCGTATTTAACTCTCTTGATATTTTATTCGAGGCATGTGTGTGTTTGTTTGTCTGTGGGAACTTATGGTAGA TATGGAATGATAGGTATACATAATGATCATGGCTATAACGTTCTGTTTCAAACCGTTTCAAGTCTTTTTTTCTTGGGTTA GGAAGCTAACAAACTAAGAAAGTGGTATGGGATTGGGGCCACTCTATTTGTAAAATGGTTTTTTTCTAGCTGAAAGGCTC TCCTTATAGGTGAGTTTGATAAAATTATCGGCGGCTGTTTTTGGCATAATCCAGTGGAAAGGAAACATTCTTGCATTCCA TCATAAAATATCAAGCATTGGTATGGTGATTTTATTCAATTCCATCTCATACCATTCCCGTTATCATAAGAAATCCAAAT ATAGCTTCAACAACAATTAGTGAGGCTTTCCTATTAGGTGAGGTTGGCTACTCGGCCACATGGATCATGTGACACCATAA AACTCTATCGTGTATGAAATTTAAAGATGCACTATTTGCATTACTGGCATAGTTGGGTTCTAAAATTCGTATGCCTTCTT TTTACCTAACCTAAGTCATGAGAATCCACTAAACATCAATGTTGTTAGTCATATTAATATACAGTTCATGATGATGCAAC TAGAACTTCCTTGGACAACAAAACCAGCATTTGGAAATTGAAGCTTTGGTTGCTTTTAATATCCTGCCATTTCAATTTAG TATAACTTGGGAAAGATACTAATCTGTGGATCACTTGGCAGCAATATATCCAATCCCTGCGTACACTGCCCCTGTGAACA CAGTTCCACCAGATTATGATATAAATAATACTACTGTAAGTCACGTGGGCCTAACAGTTTTGTGATTTCCATTTCCCATG GTACCCTTACATACTTTTTGCATTGCAGATTTTTGTTGGTAATTTGGATCTTAATATCTCAGAGGAGGAGCTGAAGCAAA ACTTTCTGCAATTCGGAGAGATAGTCTCTGTCAAAATTCAAGCTGGAAAAGGATATGGTTTTGTTCAATTTGGGGCTAGG TCTTCTTTCCCCTCATTCTTTTTAAACATGTGAATTTTTTATGTGAGATATTTTGAAACTAAATCCTGTGACCTGATTGT GTTGTGCATTTTCAGCTCTTTCATGATCTTTATTATTTTTTCTTTATCCTATTGCATACTGGTTGTTAACCTTTCCCATA TTTGATTTCTGTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAGGATAATAGGACAACAAGTGATCCGAAT TTCATGGGGCAGGACCCCAACAGCTAGACAGGTGATTTTTCCTTAAGAGAAATAGCTCCTTTATTGGCAAAATGCTTATT TAGAAGTTTTCGATGTTGTAGCCTTGGGCGTTCCAGTTTCAGGAACTCTTACGATCTATATATTATTAGTCTTCAACAGT TTCTAAGTTGGTAGTTTGCACCCATGCATGTTTCCAGTATAATTTTGCCCCCTCTTTATGTCTTGCCATGCTTTGCTGTA AAAGTTCGGCTGTTGGGGATATGTCAAGATGATGAGTCTATATTATACTGAACAATCTTGAGATTGTGCAGCGGATATGT GAACGTGTAAATGCCCAACGTGAGACATTCAGAGTTTTTTACAGGGGCTAATAGAAAAGGAAAACGAAATTTAAATGGAT ATTATAGAAGTTACATGTATAAATATGGATCTTACTTGGGAAAGTATTTTATTTGGAGGATGTCAGATAGTGTTTATTAA TTACTAGGCTTCGTCTTACTCTTGATGTATAGTTCATGAGCATTAGCATTTAGCAACAGCCCCCCTTTTCACAACTACAA CTTACATTGTGACGGTTGATTTACTACATGTTACTATATTCAAGATTATATATGAGTTGAGTTTAATATCTCGGACTAGC CGATTAGCTGAATTGCTCATTATCCAGTACTGCATTTGCAATGACAAAAATTTGGCCCTTAACTGTTTTAGGACATGCCT GGTAGCTGGGCACCACAGATGGATCCAAGTCAATGGAATGCCTACTATGGTTATGGACAGGGTTATGAAGCTTCCTATGC TTATGGGGCTACTCATGATCCTTCATTGTATGCATATGCTGGCTATGCACAATACCCCCAACAAGTAAGTTATCTAATTT TAATTATAATGTATGTTTGGAATTCTTTCAACAATTGATTCTGATGCTAAAATCAATTTCTGGGGAGTGGGGAAAAACTT TGTGAGTAGTTTCTGTGTCCCAAAATTAATTCTGAAACGAAATAAGTTGATCCAAACATGCATGTTGTTTATATGTTGTA TTGGTTCCTATCACCAGGAATAACTTAATTGAGCAACACCTTCACATGGATTGCGTATTTTTAGGTTGAAGGTGCTCAAG ACGTATCGGCTACCATGGAACAAAGGGACAAGTTGTATGATCCCCTGGCAATGCCTGATGTTGACAAGTAACTAATTACC CTTTTTATTTAAGTTGGGAGAAAGAGACGTGCATACAATCATATTGTAGTGCCTTCTTTTAGATTTCTCACAGATTCACG GTTGCTTTGGCAGGTTAAATGCTGCATATCTTTCAGTACACGGAAGTGCCATTTTAGGGAAGTCCCTCTGGCACAGTACC TATTCCTCATCCTTACAGCAGCAAGCTTAGGATCTTTTTGTACTGCCTGACCATTACATTTCAAAATTTTCTGCAATTGC AACCATAAGTTGAGTAGGGGAAGGCTTAAGTTCCTGTTAATACGTATGTGAGTCGATCCCAACGTTTTTTTAACCTTGGA CATGGTTGGCTGGTGTAAAGATATGGAAACTAGCATATAGTGGACAATAGTCTTCCATCTAATCGATCTTATTGATTATC TTTTGATTTTCTCCATTATTCAATTTTAATCAATTAATGTTTTTGTCCATTGAATATTTTAAACATTTATTTGCATCTTT TTTTACTCTTTTTGGCCAAGTTTTTATCAACCCTTTTATTTATTTTTAAAAATATTTCTTTTGATAA
CDS sequence (LotjaGi3g1v0287900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGCAAGCTCCTCAACCTCAGCCTCAGCCTCAGGCTCAGGCTCAGGCTCAGGCTCAGGGATATCATCAACATCA TCATCACCAACCTTCCTCCATCGAAGAAGTTCGAACCCTCTGGATAGGCGATTTGCAGTACTGGGTCGACGAAAACTACC TCACTCACTGCTTCGCTCACACCGGCGAGGTAGTTTCGATCAAAATCATTCGCAACAAGTTAACAGGGCAACCAGAGGGT TATGGTTTCATCGAGTTCGTTTCTCACGCTGCAGCTGAAAGGGTTCTTCAGAGCTTCAACGGGACTCAGATGCCCGGAAC GGAGCAAACTTTCCGGCTGAATTGGGCTTCATTCGGAATCGGAGAGCGTCGTCCTGATTTGGGTCCTGAGCATTCCATTT TTGTGGGTGATCTTGCTCCTGATGTTACTGATTATCTGCTTCAGGAGACTTTTCGGGTGAATTACGCTTCGGTTCGGGGT GCTAAGGTTGTGAATGACGCTAACACTGGCCGCTCTAAAGGCTATGGGTTTGTCAAGTTTTCTGATGAGAATGAGAGGAA CCGTGCTATGGCAGAGATGAATGGTGTTTATTGCTCTACTAGGCCTATGCGGATTAGTGCTGCCACTCCTAAGAAGACTG CTGCTACTCAACAACACCCTTATGCTGCTGCTGCACCTGCTCCGAAAACAATATATCCAATCCCTGCGTACACTGCCCCT GTGAACACAGTTCCACCAGATTATGATATAAATAATACTACTATTTTTGTTGGTAATTTGGATCTTAATATCTCAGAGGA GGAGCTGAAGCAAAACTTTCTGCAATTCGGAGAGATAGTCTCTGTCAAAATTCAAGCTGGAAAAGGATATGGTTTTGTTC AATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAGGATAATAGGACAACAAGTGATCCGAATT TCATGGGGCAGGACCCCAACAGCTAGACAGGACATGCCTGGTAGCTGGGCACCACAGATGGATCCAAGTCAATGGAATGC CTACTATGGTTATGGACAGGGTTATGAAGCTTCCTATGCTTATGGGGCTACTCATGATCCTTCATTGTATGCATATGCTG GCTATGCACAATACCCCCAACAAGTTGAAGGTGCTCAAGACGTATCGGCTACCATGGAACAAAGGGACAAGTTGTATGAT CCCCTGGCAATGCCTGATGTTGACAAGTTAAATGCTGCATATCTTTCAGTACACGGAAGTGCCATTTTAGGGAAGTCCCT CTGGCACAGTACCTATTCCTCATCCTTACAGCAGCAAGCTTAG
Protein sequence (LotjaGi3g1v0287900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASQAPQPQPQPQAQAQAQAQGYHQHHHHQPSSIEEVRTLWIGDLQYWVDENYLTHCFAHTGEVVSIKIIRNKLTGQPEG YGFIEFVSHAAAERVLQSFNGTQMPGTEQTFRLNWASFGIGERRPDLGPEHSIFVGDLAPDVTDYLLQETFRVNYASVRG AKVVNDANTGRSKGYGFVKFSDENERNRAMAEMNGVYCSTRPMRISAATPKKTAATQQHPYAAAAPAPKTIYPIPAYTAP VNTVPPDYDINNTTIFVGNLDLNISEEELKQNFLQFGEIVSVKIQAGKGYGFVQFGARASAEEAIQKMQGRIIGQQVIRI SWGRTPTARQDMPGSWAPQMDPSQWNAYYGYGQGYEASYAYGATHDPSLYAYAGYAQYPQQVEGAQDVSATMEQRDKLYD PLAMPDVDKLNAAYLSVHGSAILGKSLWHSTYSSSLQQQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| Gene3D | 1 | 123 | 123 | 5.0E-25 | ||
| MobiDBLite | 1 | 31 | 31 | - | – | |
| SUPERFAMILY | 4 | 118 | 115 | 2.42E-23 | ||
| PANTHER | 13 | 381 | 369 | 1.2E-155 | – | |
| PANTHER | 13 | 381 | 369 | 1.2E-155 | – | |
| ProSiteProfiles | 38 | 118 | 81 | 15.613 | ||
| CDD | 39 | 119 | 81 | 3.2066E-48 | – | |
| SMART | 39 | 114 | 76 | 6.9E-15 | ||
| Pfam | 40 | 108 | 69 | 1.2E-13 | ||
| Gene3D | 124 | 220 | 97 | 6.3E-21 | ||
| SUPERFAMILY | 124 | 217 | 94 | 1.49E-21 | ||
| CDD | 130 | 209 | 80 | 4.9879E-50 | – | |
| ProSiteProfiles | 131 | 210 | 80 | 17.268 | ||
| SMART | 132 | 206 | 75 | 4.5E-19 | ||
| Pfam | 133 | 198 | 66 | 8.1E-16 | ||
| SUPERFAMILY | 231 | 354 | 124 | 2.82E-28 | ||
| Gene3D | 241 | 334 | 94 | 1.7E-23 | ||
| ProSiteProfiles | 253 | 325 | 73 | 18.137 | ||
| SMART | 254 | 321 | 68 | 8.9E-20 | ||
| Pfam | 255 | 319 | 65 | 2.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0287900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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