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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0290700 |
| Transcript ID | LotjaGi3g1v0290700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G06150.1 Cyclin family protein; Swiss-Prot: sp|P34800|CCN1_ANTMA G2/mitotic-specific cyclin-1; TrEMBL-Plants: tr|A0A067FBT5|A0A067FBT5_CITSI Uncharacterized protein; Found in the gene: LotjaGi3g1v0290700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:59255643..59261865) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAGTGCAAGTGAAATTTCTGATCCGAACTGTTTCTAAGTCTTTTCTAGGCGCAGCTTCAGAAAAGCATATTCCTGAT TGGGTGGTCGCCGTGCCTCCCTTTTGTGTGGTGTCTGCCCCACCATTTCGTCCTCTTTAGCTTAGCTACATTCGTCTCCT TTTTCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGGTTTTGGGATAATGGTTTTTCCTCTTCCATGGAGGCTCATA GTTCTCGGTGGTGGTTTCCATGCGTCCTGACGATAGATCTTCGGTGGAGTTTCTTCTTTCGTTTATTGTTTTACTTCTTT CATTGGTGACTTGTTCAGGTTCCTCTGTCTCTATTTCTGTCCTCCCTATTATTTTTTAGATGGTGCTTTTTGTCTCTACT GTAGCGGATATGATGGTGATGCGTCCTAATGATAAAGTCGTAGTGGGGTTTGAAGGGCGTAGTATAGTGCGATCTATGTC TGTGGTGGTCTGACACGGTGCTTTTATAGGTGTGGCGGCTGATTTGTAGATTCGGTGAGGCAGGGCAGTTTCGAAGTGTG GGTGAGTTAGTTTTGCTAGGTTCCGTTGGGTTGGAGGCACTTTGGTGTTGTGGTGTTCTTCGTTGATGTTCTTTTTTATG GTTGTTTCGGTGACGCTCCCTTCTGCTTTTTTTTTTTTTCTTACAATCTGGTGAGGCAGGGCATATTCGATTTGTTGAGG AGGGCCTGAACCTTCATTGATAGATGAATGCACTTTCCCACGTAGTGACGTAAAAGCAAACATACTATTATAAGCTCGAT ATTGTCCTTAAAATTTCTGCTTTGTGGATCGTTATTGGTCATCAAATTGTACAGTAAATTAGGAGGCTTTATCAAATTTA TGTTAATGTAGTATAGGATATCATTAGAAGTAAATTTGAATTTGAATTTGAATTAGGATAAATAGGTTTTTTTTTAATAC AGTTTCATAGATTTTTTATTTTAAATGATTTATGGCATCACTTTTCCAATTGGGGTAAGAGAGAGAAATACTGTGAAAAT AGGCATTGCATGTGGTGGTACCACTTTTTTTGTTTGAATTTTTTGTATAGTATAAGATAAGATTTAAGAGGTTTGATTCT ACTCCAAAGGATAGTTTAGATATGTGAGATTTATTTTTCATATATAATGGTGATTTTAGTCGTATTTTTATTCAATATGA GACTTTTTAACATACATTTATATATTTACGGTTGGACATCTGAAGCATGGAATATGTAGGAATAACACATGTGGGTGACT CATAACGGGTGATCTCCACTACACTTGATTTAAGATAGATTTTTTTTTTGTTATAAGAGGAAGAGTTAAAATATATTCTT TTGTGAGAAAATGAGAAAAAGAAAGGAATTTAAATTGAGAAAAATAGAAGGAAAATTTCCATAAAAAAATAGAAGGAAAA TAATACATTCGTGAAATCACCCATTTATGATGATAGAAAGATCTTTATTGTTATTTTTACTTTCATTTTTTCCTTGGCTC TCTATAAAATTGTATCAAATAAAATAATTTAAAAAGATTCTAACTATTCCTTCCCTCAATCAATCACTACAATATGATTT TATTGCAATCATATCTGATTTTCTTTTTCCTAAAAAACTCACCTTATTATTGGTTCAATTCTGTGCATTGCTCAATACCA AATAACAAAAATGAACGCTCGTAGTTAAATTTGAATTAATTTTAGATTTATTCATGCCTTGTATGCTAATTTTCTTTCTT ATTGACATTGTAATGCTTAAATGTCTTTTCGGTTATTGTTTTGGAATATATGAGTTAGAATGTTCCGTTTGATTCAAATG AATGCTTGATAGTGAAACGTAATGGACCTAACGGGTATCACGTCCACACAATTTTAGGATCTGTAATTTCAAATATATTT GTAGCCGTAATAAAATGAAGTTAGGAAAAAGAAGAAAAATCAAACTTGTGAATGATCATAGGGTTATATAATCAGAAGTA GCTGTACATTTCAAAAAGAGAGTGACGGAGGCTGCATGTGATCTACCCATCCGAAAATCCTGAGCAGCGACTGAAGGATG GAGAACAGATCAAGAGGTTGTTTTTTAAGCTTTTTGTTTCTTTTTCTGATTCTGAATGTTTTTTTTTTCAAGTGATTTGC TGATAGATCTTTCTTGAATGCACTGGCATTTTGGGATTTTCTATGCCTTTCTTTTGGGTTTTGGGCATTGATCCTGTCTC TAGTTATGTTTATGTGAGCTTCTGTGCTTGAGAGTTCTCTAAGGTTCAACATTTTTAGCTGGCTCTGTAGGGTTTTTGTG CCGAGTAGTTAGCTCTCGGTTGCTTTTTTGGTCTTTGACAGATGTTCTCACCTGTTCGGTAAAATGTAGGATCCATGATC TAGCTTACTTTTATCTAGGCTTGTTGCTTTATAATGTACCCAAAAGAAGAAGAAGAAAAATCCCATTATTACTTTTCCTG ATATGTGTGGCTGGTATCTCTTTTCTTCAAGCCTGTACATGATCATGCTCTTGAACCCTGTATTAGTGTGTTATCTTGAT CATACTATCTCTCTTTTGGGAATAATTTTTTTGACCTTCAACTTCTTTATAGCATGTAAACATTGACTACTATAGAGCAG CAATGAGTTTGTAATTTGAATGCAGAAGATTATGAGAATGAGCTGTTTGAATGTTTGCTGATATGTCAATTCAAGGATAA TTTGAGAACAAGTGGTGGTGTTTGAATTGAAATAAAAAACTGCAATTATGGTCAATTGTCAAAATGATTATGGAAGATGA AACTTTTGTTTCAAGCACTGTCAAATAATACTTTAGCAAGAACCCAGAATCAAAATGATGAACATTTAGCCTCTTGAAGA AATCGGTTAAAATAGTTCCCTGTAAAGAGCTGTTTTGCAAAGTTATTCAACTAAGTCAACCACATTACTTTCCCCTTGCT TTAGGATGGTAAATCAGATAAAGAGGAACACTGAAGAAAACTATCAGCTAATACACTAAAAAATGATTCAGATATGAAGT CTTTCATGAGACATAGTTTTTGATAGAGTATCATTCCATCATTTGATTTGTGTAACAATGACACCTAGTATGAAAAGACT TATCACGTTGAACTCAACTTTTGACTGATCATACTCAGATTTTTCGGGCTTCATTTCTTTTCTTTGGGATTAGACTATAT CTTCAATGCCTATACTTTGGTGTTCACCTTCGTGTTGCTTGCAGGGAGAGGCAAAGCGAAGGAGGAGGCAGGCCAAGGCA ATCGTCAAGTTCTTGGAGACATTGGTAATTTGGAGGTGCTTAGAAATGCTGAAGGGAAGCAGATTTCACGGCCCATCACA AGGTTTTCAAATTCTCGTCCGTTTGCATTGAGGTTAATAGATATCCAAACATAGTTATACAAGTTATCAGTAGTTTGTGT TGTCATTTCTGTTTGGTTTTAATTGATCAAGTTTGTTTGTTGTGTGCAGGAACTTTCACACAAAATTGTTGGCAAGTGCA CAAGCTGCAGCAGTATAAAACTATGAACTAAACATATTTGTCAATGCACTTGAATTAAACATCTATGCAGCATTATGTTA TAAGTGAATATGTCCCTTTTGATTTCGCAGAACCTGGTAGTACAAGCTAATGAGCAAGGAACTCCACTAGGGAAGAAAGT ACAGTTGCATCAACAAGACATTTTCTTACCTCATTTAATGATGTGTTGTACTTGAATAAACCTTGTGACTGACTTTATGC ACTTTCAACTGCCTAATATTTGTTTTCAGCGTGTTATTGTAACTACACTGGACAATGGAGGAATTGTTCACAAGCAAAGT GGTGTACAAGATTTGACACAGAAGCCAAATCCTGATCCTGTAGACATGGTTAGTTCTGATGATTTTGTTTGTGAAATGAA GTGTGAAATATCTAGAAGGAATGTCCAGACTCTGAGCTCAACGCTTAATGCACAAAGCAAGGTGGCTCAATTTTGTTTAA TAGTTTGGTACAAACACTTCTACACTCACCCTGGTTTCGTATTCTGGCTGGTTTTCTATATTTTAGTGTGTTTTCCATAC AGGCTGCTAGCGGAGTCGTGGCCGAGCCTGCGGATCAGCCAGTTGAAATCGATGCAGAAAATGCTAACAATGAACTTGCA GTAATTGAATACCTCGACGAGCTATACAAATTCTATAAACAAACAGAAGTACCTATTATCATCATATCTTTTGCCATACT TTGCTGTCTTTATCTTTGTCACTTCATTAATCTAACTCATGATGTAGGGTGACAGCAGAGTTTCAGATTACATGAAATCA CAGCATGAGATTAATGAGAAGATGAGGTCTATTACTGTTGATTGGCTGCTTGAGGTCCATAACAGATTCAAATTAATGCC GGAGACACTCTACCTTACCATAAACATACTTGATCGATACCTCTCATCGACGGACATACCGAAAAAAGAATTACAGTTAG TGGGCATAAGCTCAATGCTCATAGCTTGCAAATATGAAGAGATATACCCTCCTCAGGTAGCACTACCACCATACTCCCTA CGTTTTTCCTGTTACCTCTAAATTCATCATCAATTGTTGGAAATTGCAGATGATTGACTTAGTTAGCATATCAAATGATG CTTACACCAAACATCAAATTCATTCCATGGAGAGATCAATTCTTGAGAAGTTACAATGGTATTTAACAGTTCCCACACCT TATGTCTTTCTAGTCAGACTAAGCAGTGTTCAGCCAGATAAACAGGTGATTCATTACACAGTTAACCACAAGGTTCGCCT AATATCCTAAATTAAAGATTGGTTAACAGGCATTGATTGTTATCATTTGTTTAGATGGAGAACCTGGCTTTTTTCCTCGC CGAACTCACTCTTGAGCACTACCAAGCAATTGTTTCATACTCTCCTTCAACGATTGCGGCATCAGCAATCTACGCTGCTC GCTGCACCCTCAACCGGCGTCCATTCTGGAGCGAAACGCTCAAGCGCCTATCCAGCTACTGCACAGAACAGATAATGTAA TTATAACCTCTCATCACTCTCACAGCCATGAAATATGAATGATGAAATTATTCTGATTAACACTTGTTTGATATTTTCAT TACAGAGAATGTGCTAAGCTATTAGTCAGTTTACAAACAAGCGCCGCAGATTCAAAACCTAACGCACTGTACTGGAAATT CTCAAGCGAAGACAAAGGTTTCGTTGCTCTTCTACCTCCAACCAAAAACATAGAGAATCAATTACTCATGTAATAATCAG TTTCATGATTTGTTCAATTCAGATCCAGATTGCAAGAGAATATAAAATTCAATCTCAGATTCAGATTTTCATTACTTTGA AACAAGATCGACCTTACAATACAAACAAACGCAGATAAACCATTACAATGCGAAATCACTGGTTGAATAAACCTAGATTT CTAAGCTCTCTCGCCTCTGATTCTGCGAGCGAGTTGAATATCCTTAGGCATGATAGTAACTCTCTTAGCATGAATCGCAC AGAGATTGGTATCCTCGAACAGTCCAACAAGGTAAGCCTCTGCCGCTTCCTGTAGAGCAGAAACAGCACTGCTCTGGAAT CGGAGATCGGTCTTGAAATCCTGAGCGATTTCTCTGACCAGCCTCTGGAACGGAAGCTTCCGGATGAGAAGCTCAGTGCT CTTCTGGTACTTCCTGATCTCCCTCAGAGCCACGGTTCCTGGCCTGAAACGGTGAGGCTTCTTCACTCCGCCGGTTGCCG GAGCGGACTTGCGGGCGGCCTTGGTCGCCAACTGCTTCCTCGGCGCCTTTCCGCCGGTGGATTTGCGAGCGGTTTGCTTG GTACGTGCCATTAGGGTTTGGGAATTGGGAATGAGTGAGAAGATTTGAAATGTGAAATTGCAGTGAGATTGAAGAGTGGT TTGGGGGGTTTATATAGAGTGGGTTGTGGAGAATTTTGGAGCGGGAAAATTTTGAGATGTAGATTTGGTTTTGATTTTGA GAATTTGTTTCGCGGATTGTGAGTGTGTGAAACTGGGACCGTCGATGAGAGATTAATCAACGGTTGAAGTGGTTTCTATG CTCGATGCACGGATCGCGATCCGTGGCACTTCTTGGATGAACGCGCATTGATAAATTACTTACCCAATTGCATTTTTGTA TCCTTGTTTGCATTGTGTGCAGTTTTTGTCCACTCATTCACTCCTTTCAGAAAGAAAAATTAC
CDS sequence (LotjaGi3g1v0290700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAACAGATCAAGAGGGAGAGGCAAAGCGAAGGAGGAGGCAGGCCAAGGCAATCGTCAAGTTCTTGGAGACATTGG TAATTTGGAGGTGCTTAGAAATGCTGAAGGGAAGCAGATTTCACGGCCCATCACAAGGTTTTCAAATTCTCGTCCGTTTG CATTGAGGAACTTTCACACAAAATTGTTGGCAAGTGCACAAGCTGCAGCAAACCTGGTAGTACAAGCTAATGAGCAAGGA ACTCCACTAGGGAAGAAACGTGTTATTGTAACTACACTGGACAATGGAGGAATTGTTCACAAGCAAAGTGGTGTACAAGA TTTGACACAGAAGCCAAATCCTGATCCTGTAGACATGGTTAGTTCTGATGATTTTGTTTGTGAAATGAAGTGTGAAATAT CTAGAAGGAATGTCCAGACTCTGAGCTCAACGCTTAATGCACAAAGCAAGGCTGCTAGCGGAGTCGTGGCCGAGCCTGCG GATCAGCCAGTTGAAATCGATGCAGAAAATGCTAACAATGAACTTGCAGTAATTGAATACCTCGACGAGCTATACAAATT CTATAAACAAACAGAAGGTGACAGCAGAGTTTCAGATTACATGAAATCACAGCATGAGATTAATGAGAAGATGAGGTCTA TTACTGTTGATTGGCTGCTTGAGGTCCATAACAGATTCAAATTAATGCCGGAGACACTCTACCTTACCATAAACATACTT GATCGATACCTCTCATCGACGGACATACCGAAAAAAGAATTACAGTTAGTGGGCATAAGCTCAATGCTCATAGCTTGCAA ATATGAAGAGATATACCCTCCTCAGATGATTGACTTAGTTAGCATATCAAATGATGCTTACACCAAACATCAAATTCATT CCATGGAGAGATCAATTCTTGAGAAGTTACAATGGTATTTAACAGTTCCCACACCTTATGTCTTTCTAGTCAGACTAAGC AGTGTTCAGCCAGATAAACAGATGGAGAACCTGGCTTTTTTCCTCGCCGAACTCACTCTTGAGCACTACCAAGCAATTGT TTCATACTCTCCTTCAACGATTGCGGCATCAGCAATCTACGCTGCTCGCTGCACCCTCAACCGGCGTCCATTCTGGAGCG AAACGCTCAAGCGCCTATCCAGCTACTGCACAGAACAGATAATAGAATGTGCTAAGCTATTAGTCAGTTTACAAACAAGC GCCGCAGATTCAAAACCTAACGCACTGTACTGGAAATTCTCAAGCGAAGACAAAGGTTTCGTTGCTCTTCTACCTCCAAC CAAAAACATAGAGAATCAATTACTCATGTAA
Protein sequence (LotjaGi3g1v0290700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENRSRGRGKAKEEAGQGNRQVLGDIGNLEVLRNAEGKQISRPITRFSNSRPFALRNFHTKLLASAQAAANLVVQANEQG TPLGKKRVIVTTLDNGGIVHKQSGVQDLTQKPNPDPVDMVSSDDFVCEMKCEISRRNVQTLSSTLNAQSKAASGVVAEPA DQPVEIDAENANNELAVIEYLDELYKFYKQTEGDSRVSDYMKSQHEINEKMRSITVDWLLEVHNRFKLMPETLYLTINIL DRYLSSTDIPKKELQLVGISSMLIACKYEEIYPPQMIDLVSISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRLS SVQPDKQMENLAFFLAELTLEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQTS AADSKPNALYWKFSSEDKGFVALLPPTKNIENQLLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 435 | 435 | 1.6E-136 | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| PANTHER | 10 | 428 | 419 | 5.5E-134 | ||
| PANTHER | 10 | 428 | 419 | 5.5E-134 | – | |
| SUPERFAMILY | 172 | 307 | 136 | 1.11E-46 | ||
| Pfam | 184 | 307 | 124 | 2.4E-43 | ||
| Gene3D | 185 | 420 | 236 | 4.0E-84 | – | |
| Gene3D | 197 | 308 | 112 | 4.0E-84 | – | |
| CDD | 211 | 300 | 90 | 1.14708E-22 | ||
| SMART | 217 | 301 | 85 | 1.5E-23 | ||
| CDD | 308 | 395 | 88 | 4.42041E-17 | ||
| SUPERFAMILY | 309 | 429 | 121 | 2.15E-32 | ||
| SMART | 310 | 427 | 118 | 3.0E-27 | ||
| Pfam | 310 | 426 | 117 | 5.8E-27 | ||
| SMART | 314 | 396 | 83 | 1.4E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi3g1v0290700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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