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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0293700 |
| Transcript ID | LotjaGi3g1v0293700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | rho GTPase-activating gacO-like protein; TAIR: AT3G57930.1 rho GTPase-activating gacO-like protein; Swiss-Prot: sp|Q9U3H8|TAPT1_CAEEL Protein TAPT1 homolog; TrEMBL-Plants: tr|A0A1J7GT71|A0A1J7GT71_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0293700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:60007531..60010148) extracted from Lotus japonicus Gifu genome v1.2.
CTCATAAAAATAATAGACCCTCAGTGTACAGAGTCACAGGCTGAAGAGCCAATAGACAAATATCTATTCACGTTTCTTAG GTTTATTCTTTCTCTCTCTCTCTCTCTCTCTCTCTGTATCCCTACTTCGCCTCTGTTTCATTTGGCCCCTTGTTTCTCAC AATCCACAACACACTCTTCAAACTTCAAACCCCTAAAGCCTAATCCTTTTCAATGTTTCATCATCTGGGTATTGGTTGTT TCTTCATCTTATTCAGATCATAGTGTTTTTTTAATCTATTTTGTTTTGCTTTTTTCTTTGAAATTTCTGTTTTTTGAGCT TTTCACTATTCGAATCTACTTGTTGCTTCTTCTTCTCAATAAATAACTCTCTGCTTCTTGCTTATTATAGAGTTCTTCTT TTGAGCGCTTTAGCAGATTCCATTCCTTGAGTTTCATGCTGGATATGCTAACCTCTTATCCTCATTTCTGGTCAGTGTTT CTTTCTTTTTGGATTGGGATATGTGTTTCATTTATTTAGTTTTGTTGTTTCTGCTTTTTGATTTATGGGTTTTCAAACTT TGAGGTGATTTTGTAGATTTCTATTACTATCAGTTGATTCCATTTGCAAGCATGAATTTTTGTGTGTGTGGATCTTCCGT AGATTGTTGAGATTAGAAGCTTATTTTGTGTATTATTTATCAATGGATTTAGTTTTTCATTGAATCCCCAATCCTCTCAT GTGTTCTTATATGCCCTAATCTATTTCTACATGTGTATGTCTTGGCTAGAAACCTAGCTTCCAGCTACTTTAAAGACTTA CCATAAAGATTTCTATGTAAGGTGTTCAAAATCAAAGTATTTAGTTTTTTGGTTTTCAGTGAAAAACCAAAGCCTGAGAA AAAATGCAGTTTACTGGTTCAGTCTATCTTGGAAAAAAGTGTGCACTATAATGGAGTAGGAAAAGTCTTTTCCATTCCAT ATATAAAATCAAATGGGAGAGTATTTTTTTTTCTTATGCTTCTTTTGCCCTGAAAAACATACACTCATAGCTATGATATT ATTTTAGGCCGGATTTTCCTTTTGTAATGTTGTAGAGGAGGCTTATATGTTTGTGTTTCTGCACGTTATTATTTGTCAGT ACATGCTGGATTGAGCATTTGCTTGTTATCTCTTCATCTATCTTGATGGAACTACTCTGAGTTGTTTAAGTTTAAGCTAA TTCAGAATCCTTTTTATCTTCATTGGATAGTTTATGATGTGTCTTTTCTTGCAGATATTCCTGTTTGTATGTTCACATCT CTTCTGAGGATTTTAAGATCATGGGTAGAGGCAGAGGAAAGGGTAAAAAGCTGACTGTTACTAGTCATGAGGATGCTGTG AGCGGTGAAGATGAAAAGGTTCCCATGCAAAAGAGAAGAGGGAGGCCGCAGAAACCGCTAAAGGATGACTTTGATGAAGA TGAAGTTGAGAAAACGGAAGATGACAGTGAGAACATCAAGAATGGAGTCTCTAACAAAGAGGTGAAAAGTCCCACTGCAG CTGAAAAGAAAAGGAAACGTAACACGCCGGTAAAAGAGAAAGTAGATTCACTTGAGGAAGAAAATGGCAATGGAAATCGA TCGAGCACCGAGGAGTTGATAAAGTCCAATGGATTTAGACATAATGGAAGCAGGCGCAAAAGCAAGCCTCGTCGAGCTGC TGAAGCAGGTGTGCAGTGCAAGTAAGAAGAATGAAAGTTGGAGTTAGGAAGTGAGGCCTAGTAATCTTTGAATTCTTTAT TTTATTCACTTGTTTTGCTTCTATGTCTTTCGGTTGGAACTGGTTTGAGGGCTTCCATTTGGTGATTCCCTATCATTTTT TTTAACTTGAATCACGAATTTGATTATTTAGTTGTAGTTTTATAATGCTTTAACACCTTGAATTTAAATCTTTTCTACTT CGATTTTCAATTTGTTCGATATGAAAAGATTTACTCTTTAATTTCAATTATTACTATCATTTCTTTTATGCTCCCTCTTT TCATCAGAGTTGTCTAAGGTCTCGTTAATGAGAATTTTGGTGACAGTGAGTTACTCGAGTCTTAACCTCATTCTTATGTC TCAAAACCCCTGTTTTGACCTTTGAGTTGTTGAAATTATCTTTTGCAGTACTTGTTCTTGCGAGTCTTCTATCTCGAAAA TTAAAATAAGAGGTATGAGTCTGAACTTATGAAGTCATTTTTTCAAGGTTGAAGCAAATGGACCTTGAATGGAACTTTGC TATGAAGAGTTTAGCATTCTACTCCTATGCTTGAAAGGCTACTTGAAGTTTTTGATAAGTCCAAGTCAATAAAAAAGAGT TATGTGCAATTGTGCATAGAAAGTCTCATCACAACCCAATAGGATTGTGGTAACCATCTTTAGAAATATCTACTTAATTT CTTTAAGAGCAATTCACTTCCAGCATTGATGATATTTTCCTGATTTGTAGATACATCAGACTTACAAAATTAGAACTATG GAGTTGTATATGATACATACCATGAATCCATGATTTATATACTTAAGTTGTAAGTTGGCTTACCAAAAAAACAACAATTA TTAGTTGTAATTTTACTTGCATTCTCCTTTTATTGGACAAACAAAAGTGCAATGGCAC
CDS sequence (LotjaGi3g1v0293700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAGGCAGAGGAAAGGGTAAAAAGCTGACTGTTACTAGTCATGAGGATGCTGTGAGCGGTGAAGATGAAAAGGT TCCCATGCAAAAGAGAAGAGGGAGGCCGCAGAAACCGCTAAAGGATGACTTTGATGAAGATGAAGTTGAGAAAACGGAAG ATGACAGTGAGAACATCAAGAATGGAGTCTCTAACAAAGAGGTGAAAAGTCCCACTGCAGCTGAAAAGAAAAGGAAACGT AACACGCCGGTAAAAGAGAAAGTAGATTCACTTGAGGAAGAAAATGGCAATGGAAATCGATCGAGCACCGAGGAGTTGAT AAAGTCCAATGGATTTAGACATAATGGAAGCAGGCGCAAAAGCAAGCCTCGTCGAGCTGCTGAAGCAGGTGTGCAGTGCA AGTAA
Protein sequence (LotjaGi3g1v0293700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRGKGKKLTVTSHEDAVSGEDEKVPMQKRRGRPQKPLKDDFDEDEVEKTEDDSENIKNGVSNKEVKSPTAAEKKRKR NTPVKEKVDSLEEENGNGNRSSTEELIKSNGFRHNGSRRKSKPRRAAEAGVQCK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 134 | 134 | 3.0E-56 | – | |
| PANTHER | 1 | 134 | 134 | 3.0E-56 | – | |
| MobiDBLite | 1 | 134 | 134 | - | – | |
| MobiDBLite | 10 | 45 | 36 | - | – | |
| MobiDBLite | 70 | 94 | 25 | - | – | |
| MobiDBLite | 95 | 110 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0293700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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