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LotjaGi3g1v0295400.1

Overview

Field Value
Gene ID LotjaGi3g1v0295400
Transcript ID LotjaGi3g1v0295400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|I3SY99|I3SY99_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0295400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:60945732..60950288) extracted from Lotus japonicus Gifu genome v1.2.

CCAGATTTTCAATAGAAACTTAATTAGAACAAAGACAAAAAAGAAACGCGATAAACCTAAAATCAGTCATACCGTTCACA ATTCTCACCCCCTTCCTCGAGTGACCTCGTCTCAGAGTTCACGATTCGAGCGACTCGCCGCCGCGCATCACCACTCGCCG CCCTGATTCACCACTCGCCGCCGTGCATCACGCCATGCATCGGCCGTCCACAATGTCTGAGCTATTGCGTCACCGTGTCT CACCATCGTTCTGGTTCTCGTTCTCAGTCATCTCTCTGTCTCTAGGGTTTTCTCTTTTTTCTTAGATTTTGAATCTCTGA TCCCACTCACTCTCGCCTCACGCCATCTCTCTGATTTTGTGCAGCGGAATCGATGATGAAACATGAATCGGACGATTCAG GCAACGACTTCGATCTCGCTTGCGACGACGAATCGGAGTACTGCTCCAGCCAGGAAGCTTCGTTCTCTTACCTACACTCT GAGATCTTCTGCGATTGATCAAAGCTCTCTGATTACACTTCGTCACTGTTCATCGATTCTGGAAGCCAGTTTTCGGAAGG ATCTGGAAGGAATTCTGGCTTATTACTTCAAGCGTCGAAGAAGATGTTTCTCTTCAGCTTTAGGTACGTTTGCTTATTGC TTCAATTACTTCAGAGCTCAAAATTACTTACTAGTTCTGTTGAAAATCTGCTTCTTCCTCTGTTTGGTTTTATCTTGTGA TTTCTTTATTTGGTGGTTCTTAATTTACAGCTTGTCTGATTTTAGTTTGCAAGTTTTGAAGATTTCAGTGCTTCAGCACA AATGGTTCACTTGATCATTGAGATAGGTTGCTTTGAAACTAAATCCAATTTTGAATTGCACATTGATCAGTACTTTGTTA CTTGTTATTGTTTTGCCTATCTCTCAAAGTATATTTTCTTTAACTTACAAATTGCTATCAAGTTTAATGTGTTTTTTCAA TTAATCTTATGTGATAGTCACCTTGCTAGTTCTTTGGTTTTACACCATTTAGCATGGTTCTAAGCACCACCTGGTAATAT TCTCTTTTTGACATGATCTAGCATAGTGTATTATCTTTTTGTCGCCTTGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTTTATGCACTAAACTTAGCATATTACCCCGATGAGTTAAACAGAAAGAGTAGAAGTTAGGTTATTTGTC ACAAAATGATTGACTATTTTAGATGCAATCCGTTCCTGAGCTAATGTAATAGTTACAAGCTTGTGGTGCTTAATGATGCC ATATGTTCTCGGAATATCTGGTGGTAAATTGGTAATTGCGCTCACCAAGTGAAGCTTCATTTTGTGAGTGTCACTTTTTA TGCTTTCCAGTTCATAATTCATTGTGTGCTTGATTTCCAGAAAATTTTGAACATATTGTTGCTCCTTTTTTAAGAGAGGG GTGGTGGTGACGCCGGTGAACAGATGGAAAACGATGTATGCTTACCTCAACAATAACAAGCTTTTCTAATTATTGTTCTC CATGACATGACATATTTCATTCTATCCATTTTGGTTCTTAAATTTAGTTATACTTATATCATTTTCTGAAATATACCTAA AACTGATCTGCGTACATATGATGAAATTTAATGAATAAGAATGATCTTCTATTGCATTCAACTTGCATCACATGACACTT CTTAGTAATTCCTTACTTCATTGTTTTCCTCCCACTATATCGTGTTACGGCTATATGTTAAACTGATGCATTTTGCTCTC ATGCTATGTGACTAAAATTAGATTAGATCTTTGGTTATATCATTATTTAAATTGGTAATCTTGGCTCTAATCCTAATTGT ACGATGCAGGTAGCCTTCATTTCCTCGTGTTTCTTTCCTGGTAGGTAATGGTTAACTAAATCTTCTCAACATGCAGAACA TGGTAGCATTCTTCTATTGTGTATATATTGGAGGGGAGACATATAACATATTTGGTTCCATTGATAAAGATCAATGTTGT ACAAGACTTCTGATTGCATTTTTGCTCATTGCAGCGGGCTTTTCTTGGTGATCAGAGACAATATGATGTGACTCTAATCA CTCATTTTCTTTTTTCAATTTTTTCTCCTCTTTTAATCTCTCTTCAAGTGTATTGTTTGTGTTTATTTGGGTTTGGAGAA TGTGATTTGATGTGTGTTTGTGCAGATTGTGGGATGGATAATATCCTGAAGCCAGGTGAGTTATAAAGGGTCGTGACTGC GGTTTTTTACTAGAAGTGCACTCGTCGCAGTAAGTTTCGCTTTACTATTCAATTCAGTCACATTTTTTAGAACTTCGCTG TTTTCACCTGACCATGTTTTCATCTTTGTCTAAATGCAAGGAAAATTACTTTTGTGTAAATGCATGGAAAACTACTCAAG CAGAGGACTGCATCATCATAATGAACAAAAAGCTGGAAAAAAGGTATGATCACATTCACATCCTACTTATTACAAGCTAG CTTCTCTCCCCAACCACTAGCAATGTCAACATCAAATGCTCAAGTGTATGACCTAGTACAAGCATAAACATAGATAAACA GTGTTATTTTGACACTCACAATGGCTTGCTTATTATTAAGTGGAAGGTTCATGTTTGACGGGGTAAGTGATTAATAAAAT TTGCTCCAGGTTACTTGCCTGCAGTTTATAGCATAAAAAACAAAGCAGGTCTCGTCATAACCGATGATATTCAGTCAGGG CTTGGTCGTCTTGGTAGTCACTTTTTAGGTTTTGAGGTACATGGAATTGTCGTGGATATTGCAACTGTAGCAAAGATAGC ATTTTATCTAAGCTGCATATGTGATTATTTAATAAATGCTACTTAGCTAGGTTGACTATGCATGAACTAGAAATAATTGC ATTTGTAATGCAATTGAAGGTTACTTCACTCATTCAATGGGAAACAACAGTGAAGACTCTTCTCAACAAGGGGCACAAGA AAGGCTATGAACTGGGACCTAGAAAGTTATACAATACATTTGTTAGGTACTTTACGTAAATTTTGGATTCTCAATGTTTC TTATTTGGTAAATTTATTTCATCTAAATCATGAGTTTAGATTTTAGCTTTCATAGCTCTTGTTTCACTCTGGTCTGAACC AGATACATATGTTTGGTTCAATCTGAAAGTTCTAAAAAAAGTTAATGAGTTGAAACTTTTAAGACAAGTTGCATACATAA TCATTTTGAGATGAAATGATTTATCTTATATTTATACATATATTTATACCTTTCTATTTAGCTATGATTTATCTTATATT TGATTGCTGCAAATGTGGTTAACATATTATAGGTGAAATGTAGTATTTTAAATATCTCAGGGTCCTCTAAAGTTCGATTG TGTTGTTTGGATTTAGTATATGAAATGGCAACGGTTAGAAAACTGTTCTCTTTGACCTACAAATAAAAACGTTCTCAAAT ACCTTTGACAACGTTTTAGCATATGTTCTCCTTATGATCGTGGGGAACGCTTTTCCTGTGACATCACAAGAAACGAGTGA AAATGCGTTGCCATAGGTTTACCAGAAAAACGTTCTCTATAGCTTCTTATTGAGAACGGTTTTCTGTTATTGTTGCCGAT GACTCAGTAAAGCGTTGTAGAAAGAATAGGCAACGCCTCAGACAACCACACTTGCAGAAACGTATCAGAAACCAAAGGGA ACGGTTTTTTGATATTAGGCCACGGTTTCTAGGCGTTGCTGTAGACCCAAAATGTTGTAGTGTAGTTTGGGACCCCTTGG TGTGTGGTGTTTGGTTTGATTCTGGATTGGCTTTGGAGAGCAAGGAATGAGCTGTTTTTTCAAGGTGTAGGGAAGTCTGT TGCTTTAGTGAAAATATTGATCCTTTCAATGATTGAGGATGTCAAGGTGGCTGCTGCAGAACAGGCTCCGCTTAATGTGG TTAGCAAAGTCCAGAGACATGTGGTTTTAAAGTGGACACCAACTTTGGAATCTTGGGTAAAACTTAATACAGATGGTTCC TATAGTGTGGATGAGGATTGTGCAGCTTGTGGTGGTGTCCCTCGTGATCATCATGGTAATTTTTTACTAGGGTTTACAAT GAAAGTTGGAGTCTGCTCTATTTTACATGCGGAGTTATGGGGCTTGGTGCATGGGCTGAGGTTTGCTCTTGGGAGGGGTT TTTCTAAAATCCTTATTGAGGCAGATTCTGCGGGTACTATTGAGTTTCTCAATAAGGGTTGCCCAGTGGTTCATCCTTGC TTTCCTTTGGTTAGGGAGTTCCATCATCTGGTTGGTCAGAACTGTTATATTCACTGGAAGCATGTCTACAGAGAGGTTAA CTTTGTAGCTGATTCTTTTGCTAAGAATGGGCTTAGGATCCTTTGATGTGTTACCCTCCTTTAGTATAGTTCCGTTCTTG TTTAATTTGTGCAGTCTCTCTATTTGAGGACGTAGTGGGTTGTTTTTTGGGCTTTTAGCCCCGTTGTATCATCAAAAAAA AAAAAATCACACAAATTGCTTATGAAATCAGATGTTCTGTCTTTGCTTCTATAAAATGCTTCTTATTCTAAGCTTCT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATTGAGGATGTCAAGGTGGCTGCTGCAGAACAGGCTCCGCTTAATGTGGTTAGCAAAGTCCAGAGACATGTGGTTTT AAAGTGGACACCAACTTTGGAATCTTGGGTAAAACTTAATACAGATGGTTCCTATAGTGTGGATGAGGATTGTGCAGCTT GTGGTGGTGTCCCTCGTGATCATCATGGTAATTTTTTACTAGGGTTTACAATGAAAGTTGGAGTCTGCTCTATTTTACAT GCGGAGTTATGGGGCTTGGTGCATGGGCTGAGGTTTGCTCTTGGGAGGGGTTTTTCTAAAATCCTTATTGAGGCAGATTC TGCGGGTACTATTGAGTTTCTCAATAAGGGTTGCCCAGTGGTTCATCCTTGCTTTCCTTTGGTTAGGGAGTTCCATCATC TGGTTGGTCAGAACTGTTATATTCACTGGAAGCATGTCTACAGAGAGGTTAACTTTGTAGCTGATTCTTTTGCTAAGAAT GGGCTTAGGATCCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0295400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIEDVKVAAAEQAPLNVVSKVQRHVVLKWTPTLESWVKLNTDGSYSVDEDCAACGGVPRDHHGNFLLGFTMKVGVCSILH AELWGLVHGLRFALGRGFSKILIEADSAGTIEFLNKGCPVVHPCFPLVREFHHLVGQNCYIHWKHVYREVNFVADSFAKN GLRIL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR47723:SF3
15 162 148 6.2E-37 –
PANTHER
PTHR47723
15 162 148 6.2E-37 –
ProSiteProfiles
PS50879
33 163 131 10.855
IPR002156
Gene3D
G3DSA:3.30.420.10
35 163 129 3.0E-18
IPR036397
SUPERFAMILY
SSF53098
36 163 128 7.71E-18
IPR012337
CDD
cd06222
39 159 121 2.26848E-39 –
Pfam
PF13456
40 160 121 6.7E-24
IPR002156

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004523
Molecular function RNA-DNA hybrid ribonuclease activity Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0295400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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