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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0325500 |
| Transcript ID | LotjaGi3g1v0325500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrane lipoprotein lipid attachment site-like protein, putative; TAIR: AT5G54240.1 membrane lipoprotein lipid attachment site-like protein, putative (DUF1223); Swiss-Prot: sp|A6VME2|CLPX_ACTSZ ATP-dependent Clp protease ATP-binding subunit ClpX; TrEMBL-Plants: tr|A0A072TQV0|A0A072TQV0_MEDTR Membrane lipoprotein lipid attachment site-like protein, putative; Found in the gene: LotjaGi3g1v0325500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69283151..69285614) extracted from Lotus japonicus Gifu genome v1.2.
GTAACTTTTGAACGTTACGCAACCTGTCTTCCCCATGCAACAACAATAAAAGACAGAAAAACATTCGATATTGAAAATCA TTCTCACCCATTTTCTTCGCCATCTTTCTTTCTCCACCTTCCATCTCCATATTCCCCTTCCCCTTATTAGTATTCCACCA CACACAAACCTTCTCTCTCTATATTGCATTTTTTGTTTTCTTCACAACTTCTCCACCATTGTCATTATTAACTCTTCCAT TTTCTGCAACAAACATCTCATCTCACACAAACACCACCGCCACCGCTGATTAACATAAGCGATGGCGCCACGTCTCTGGA CCTGCTTCGGGAGCAAGGGGAGCCGCGGCGGCGCTGAGGGAGTCACGCCGGAGGTATCCGCGGAGGAGCAGGGACGAGTG GGTCCGGTGGTGGTGGAGTTGTTCTCGTCACAGGGATGCGCCACGTCGCCGGCAGCGGAGCTGGTGCTGTCGCGGCTGGG GAGGGGTGATTTTCAGCTGGAGGTGCCGGTGGTGGTGCTGGCGTTCCACGTGGACTATTGGGACTACATGGGCTGGAAGG ATCCTTATGGGTCCAGCCAGTGGACCGTTAGGCAGAAGGCCTATGTTGAGGCCCTTGGGCTTGACACCATGTTCACCCCT CAGGTTGTTGTTCAAGGTCAGGCCCATTGTGTTGGAAATGACGAGAATGCCCTTATTGAGGCCATCACAAATGCTCCTAC ATTCCCTGCTCCTTCATTCCAGGTTTGTTTGCAATTGCATCCCTTTTATGTGCCTGATTTCATTCATTAGGAGAAATTGC CATCCTTAGTTAGGCAAATTCTCAAACTAGAAGGCAATCATAGCTTTAATCAGGGCGGTTTGGGCATCGGTGAGCTAGTT CGGTTAAATCCACTATTTGGATGGGTTGGTTGGAAAATTTTACTAATATTTAATTGGGCATTTTTTGCTCGGCTCACCTA ACTCGTGAGCTAAGCGGGTTGGAATTTAAGTTAGTCAAACTGCTCGTGAACCATGTTTTTGTAGCGACATATTGTAACTT TTAAACTTTCCGTTCCATTTTAATGACTCTACTCACCTAATCCACAAACTTGTTGTGGGTTAAGTCGGGTTAAGAATTTA GGATCACGATTCGTAATCTTAGATGATGTCTCATTCTTGGATTTCTTGTAGTTGGGAGTCCTTGCATTCATTGCGATCAA GGGTTCTCTGCCATCTGATCAAAATTCAATGACTCAAATTTAAAGAATTTTTGCATTCGTTAAAAAACATGATCCATTCT ATTAAGATCGAACTGCCTGCATTTGTGACGGTAGTGCAGCCAACGGCACATAATCCAAATTCCTCATTCCCACCAAGAAT TTAGAGGCTTATTAAAAAAGTGAGCTAGCTCGGCTCACCTCAATTTTATTCCCTCTTGTGGTGAGTCAACTCTTAGTCGG GGCTACTCACTTCACTTTGAGAGGCCTAACTTTTAAAATCAATTCTCACAAACCTTATGGCAAACATAGATTTAATTAAC TTCATCGTATTAGCGACATTATTTATTCTAATCCTGCTTCAAATTTTTTGTTGTATGTTTTTTTCAACACTAACATTGTT AACTAATGAAGCAAAATTCTTTGGTTACAGGCAACATTTACAAGGCCTGCACCAGATTCATTACAAGTATCCCTAACAGG AGCATTGAAGACGAAGGTGGACAGTAACGGTGCCAATGTAATGGTAGCATTATATGAAAGTGGTTTGGTCACTGACTGTC CAAGAGGGGAGAACAAAGGGCGTGTTCTGTCCAATGACTATGTCGTTAGAAAGCTTGAAAAGCTCTGCAATGTCAAAGAC ATCTCAGCCAAGAAAACTGTATTAGGAACCATTGATTTTCCTCTGTGGAAAGGATTCAACAGCAGCAAATGTGGTGTGGC TGTTTTTCTTCAGAACAGCTCTCACCAAATTTTTGGATCACAGAGTTTTCACCTGCCGGATGATATATGAAAATGTTATT GATTAATTCATTAGTTTTATTTGATATTCTGGTTAATTACATTGGTCTTGATTGTTAGGATGTGTGTACAGTGTTATATG TATTGTGTTATAGGATAATATTTTGTTCTTTTGCACTTTTCCTTCATGATTGATTGTTGAGATGATTAGAAGATGGATAG AGAAATTTAAAATTGTGGGGTGCGCTATTTGATTATTTGGATCTGGATTTGGATTTGAATTTGGATTTAGATTAGATTAT TACTGGTTAAACAATCTCATTCATACACAGACAAACACTCACAGCAATAAAGAAGCTGATGTGAAGGTATTACCTTGGTT GCTGTTTGTGGTTATTTTTATCTTGAGGAAGAAGAAGGGTCAGCTGGTGGTGAGGAAAAGGATGGTGGAATAAGAAAAAT AATGAGTGAATTAGTTAATAGTGGGACCATCAGATTACAAGTTAATATGAGTTAGCCATGCCAG
CDS sequence (LotjaGi3g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCCACGTCTCTGGACCTGCTTCGGGAGCAAGGGGAGCCGCGGCGGCGCTGAGGGAGTCACGCCGGAGGTATCCGC GGAGGAGCAGGGACGAGTGGGTCCGGTGGTGGTGGAGTTGTTCTCGTCACAGGGATGCGCCACGTCGCCGGCAGCGGAGC TGGTGCTGTCGCGGCTGGGGAGGGGTGATTTTCAGCTGGAGGTGCCGGTGGTGGTGCTGGCGTTCCACGTGGACTATTGG GACTACATGGGCTGGAAGGATCCTTATGGGTCCAGCCAGTGGACCGTTAGGCAGAAGGCCTATGTTGAGGCCCTTGGGCT TGACACCATGTTCACCCCTCAGGTTGTTGTTCAAGGTCAGGCCCATTGTGTTGGAAATGACGAGAATGCCCTTATTGAGG CCATCACAAATGCTCCTACATTCCCTGCTCCTTCATTCCAGGCAACATTTACAAGGCCTGCACCAGATTCATTACAAGTA TCCCTAACAGGAGCATTGAAGACGAAGGTGGACAGTAACGGTGCCAATGTAATGGTAGCATTATATGAAAGTGGTTTGGT CACTGACTGTCCAAGAGGGGAGAACAAAGGGCGTGTTCTGTCCAATGACTATGTCGTTAGAAAGCTTGAAAAGCTCTGCA ATGTCAAAGACATCTCAGCCAAGAAAACTGTATTAGGAACCATTGATTTTCCTCTGTGGAAAGGATTCAACAGCAGCAAA TGTGGTGTGGCTGTTTTTCTTCAGAACAGCTCTCACCAAATTTTTGGATCACAGAGTTTTCACCTGCCGGATGATATATG A
Protein sequence (LotjaGi3g1v0325500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPRLWTCFGSKGSRGGAEGVTPEVSAEEQGRVGPVVVELFSSQGCATSPAAELVLSRLGRGDFQLEVPVVVLAFHVDYW DYMGWKDPYGSSQWTVRQKAYVEALGLDTMFTPQVVVQGQAHCVGNDENALIEAITNAPTFPAPSFQATFTRPAPDSLQV SLTGALKTKVDSNGANVMVALYESGLVTDCPRGENKGRVLSNDYVVRKLEKLCNVKDISAKKTVLGTIDFPLWKGFNSSK CGVAVFLQNSSHQIFGSQSFHLPDDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 266 | 266 | 5.4E-141 | – | |
| PANTHER | 1 | 266 | 266 | 5.4E-141 | ||
| SUPERFAMILY | 34 | 252 | 219 | 1.43E-57 | ||
| Pfam | 37 | 248 | 212 | 4.8E-68 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0325500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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