Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0330000 |
| Transcript ID | LotjaGi3g1v0330000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 9A; TAIR: AT3G19770.1 Vacuolar sorting protein 9 (VPS9) domain-containing protein; Swiss-Prot: sp|Q9LT31|VPS9A_ARATH Vacuolar protein sorting-associated protein 9A; TrEMBL-Plants: tr|G7J0B1|G7J0B1_MEDTR Vacuolar protein sorting-associated protein VPS9; Found in the gene: LotjaGi3g1v0330000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:69747587..69751721) extracted from Lotus japonicus Gifu genome v1.2.
CTAAACTCTTGTTAACTTATGATTCCATGAAAATATAGACATGGAGGGATCAACATCAACATCAGCATCAACGTTTTTCC ATGATTTTCTCCACCGCATGCGACACCCTGCTTCCCTCGACCTCGTCCGAGCCATCAAGAGGCAATTAATCAAACCCCAT TCTGCTTATCAATTTCAGTGTTCTTTCACTTTGTTATGCATTAGTTGCTTTTGCATTTATTTGTTCTACTTTTGTGATGA ATTGTATAGCAAGGGAAACAAGTTCATGTGTTTTCTATTGACGTGTATGTATGCACGTTTCATAGCACTAGCAGTTACCA TTTTATGGTAGATTTTTTAAGTTTCAGTTGAATCATGAGTACTTTAACTTGTTTTGTAGTTAATTGCCTTTGGTTGCTTT GTTATCGGCCCAAAATGAGTTTCCTTCAGGGTAGCAGTTCCTGGTTAAAATGCAATGATGTTTGCAATTTCAAATATAGG ACAAAATTTTAATATTTGTTAGTTAGACTCATTAAGGAAATTATCTAGTGATTGAAAGCTTATATCAAGTTTTCTTAGAT TAATCCGGTTCACGAATGGAATCGAAATTACAGGAAGTACACCAAAGTTAAAACATTGAATCTAAATTTCAACTATAAAG CCATTATTTAACGAGTTCAATTCTTCAATACTATTGATTAAGCCTACTGATTCAGAAATGCTTTCACAAACCATCTCTAG CACATACACTAGTATTTACATGAAAATCCTGTATAGAAATACTATAATTTCTTTCCATTATTATTTCTTTTTTTATTAAA AAGGATATATAGTTGCTATTTTTTGTATTTTCACATTGCTTTCAAGTTGATTTTAGAGGGATGTATGATAAGTATGCTTG ATTTTGTGCCTCTTTCATAGCTAGGAATCGATTTAATAACTATGTGAGCAAGTAAGTCTGTATAATCAGAAACAAAATGG ACAAAATGTATCCAGAGATTACTGAATAGATTTTTTTGGTCTCAGTCTTCAATATAGTTATGCTTATTACTGATTACACA CAATCGGCACTACAATTTGCAAAATCTTTCTGAGGGCTGCATGTGGTGCACTGGTGCAGCTTTAATTAGTATACAATGAT CAGCTTGACAAATAATCATAAAATGCTTCTAGTGACTTGATTGATTTGTTTCCCTGATTTATTTGTGAATTACCAACTGG ATCATTATTCATTACTTCTTTTATGTACCATATATTATGTCAATTGCTTCCCTTAAATTGTTTTCTCAGTTTTTGGTTGA TCTTACCCCTTATGGCAAATTGTTTTATCAGCTTCATTGTGTCATTTTCATTTTACCCTCCAAAACCTGAAAATGATGGG AAAAGAGTTCAAGACTTCTTTCTGTCTATGGAAGTTACAATCAGAGATCATCCATTGTGGGCCAATGCCACTGAAGATGA CATTGATTGTGCGATGGAGGTAATTCACAATGTATTTAATTACATATGCTACTCTTGGTGTAAGTTATGAATGCAAATTT ATCTTAGCAGTTAGTTCAGGATAGTATGTGTTTGGTTACCAGCTGCATTCAACGAAAAAGCACTTTTATCCAATCCTTCC ATTTGCTTCATTTAGCTTTTTATGCTTTAGAATCCTACATAACTCTGTTAGCCTCATCTCCAACATGTTTCTAAACACGT CCATAGTAGTTATATTCAATATGATAAAGCCTTTTTCTTCGTTTTCTTTTTTGGTCTTTGGCAGTACTTTTGTATTACAT CCTAAAAGAGTTTTGTCCTTTAAAGTATATCATAATCACAATACATTATACTAATTTGATGTCTGATTACTCTAAATTGT TATTCTCTCCTTTTCACATTCCTTACGCAAATTCATTAATTTCAACAACTTGCTTAAGGCTGAGTGCTGCTCATAAAATC TCAAGAACAAGGATATTGTATTACTCGAAAATACTACATTAGTTTAGGAATGCACGCGCGCACACACACACACACACACA CTGACAGTATGTCTATTGACTTTTTAGATTTCAGATTGTAAACCAAAGAATAGACATATGTCGGTTTCTCTTTCTTTAGG TAGAATCCTTTGATTTGGCATATTCATCGAATTATATGTATTCTCTGCAGGGATTAGAGAAATATATATTGACTAAATTG TTCGCTCGGACATTTGCTGCTTCTCCTGAGGATGCAAAGATTGACAATGAAATCTCTGAGAAAATATGCTTGCTCCAAAC CTTTCTGAAGCCTGAACATTTGGATATACCACCAATTCTTCGTAATGAAGCGTCATGGCTGGTATGCCTCATCACGATGC ATGATTAAATTTTAAACCGTTCATTTCCGGGTGTATGAAATGAGTTTCTTGATGCATATAATGACTATTGACACCAGTTT CCTATTCCATTCAGCTTGCAGAGAAAGAATTGCAGAAAATCAATGCTTTCAAAGCTCCCCAAGAGAAACTCTTGAGCATT ATGAATTGTTGCAGGGTCATTAACAATCTGTTGCTCAATGCTGCAATGTCTGAGCATGTGCCAGCCGGGGCGGATGACTT TCTCCCTGTGCTTATATATGTTACGATCAAGGCAAGCGCCCCTTGGTAATAAGACATTCTGCTGATTGTCAAATATAGTT TTTGGATACTGAGACCCTTTATTTGTTTATAAAGTAAGAAGCATAGAACGAGATTTGTTCTACTTCTACTATTTTTATTT GTTCGTAAAATTTAAACAAAGTTAAAATTAATTGTTAAAATATGAGAACTGCTCATGAGTATAAAATACTGGAATGCTTG GCTTGAACTGTGGCTCATAAAAATTAAAGGTTAGCTTTTGTTTCAGTGATTTTAGGCCTCTAAGCATGATTGGTTTACCT TTTGACTCATTGATACTAATTTCATCTTTTTGGTTTATCACTTCAGGCGAATCCTCCAATGTTGCATTCTAACCTCAAAT TCATCAAGCTGTATCGAAGGCAAGCAAAACTCATCTCAGAAGCTGAATATTATTTCACAAACCTTGTGTCAGCCAAGACA TTTATAGCTGACTTAAATGCTAAATCCCTTACAATGGATGAAATCATATTCGAGGAGAGCATGCAAGCAGCCAGATTAAC CAGCAGAGTCTCAAGTGTAAAACCCTCTACATGTCAAGCAAGCCAGCAAGGGAAGAACGATGGCAGTTTTTCGAAGAAAA TGCACCTTAAACGTGATGATACTGGAGGTTAGTTTAACTTGCTTTCTGAACAAGCAAAGTTATGTGCAACCCTAAGCCTC ACACTTACTTAGTTAAAAGTCACTTGTATTACAGTAGTAGTTTACTTTTTGTTTCTCGAGTTTCCAATCCTTATCACAAT CATGGTAACACCTTGCAGTTTTTCAAGTTTTGCAACATGAAACAAATTATCCATACACGGAAGCTAAGGGTGAAGAGCTA GCAGTTGAAGATGTTGACATATTATTAAATTACTACAAGGATTTAGTTGCTAAGTACACAATCCTGTGCAAAGCTATCGA TTGCCTTTCAGTGCCAGAGAAAGAACCCCTCCTTCATCATCTTGAAATGCAAGGAGCAGGAAGTCTGTTTTCCCAGCACA ACAAAATCAACACAAACACAAACGACCAAACCATCTCAGAAACACCAAGATGAATGACAATGAGAATGCACGAGTGTGTG TATACAATATCATCAAGCAAGATTTAATATCTCCATGCATTGAAATATAATTAGGCAGGGATGTCACATGTACAAATATT TTCATGAAGAATTAGCCGTGGAACACCCAAGTGTGTGTCCTTTGAATGTATAATTTCAGATTCCATTTAAGGTGGACATG CCAAAACAAGGTGCACAGGTGCAGGTATGTTATGTTTTAGCTGTTGAATTGAACTATGTTTTCCTTAAGATAATCTGACA ACAAATAGTAATGGACCAATGTGTAAATCAAATTAACGGACTATTTTCATATATTATTTAAAGTTTCTGTTAGGATGTCA AAGAAGGGAAAATTAGTTAGGGGTTGTTGTGGTAGTTAGTAAGTAATTACTAGGAGGGGACTAGCTAGATATATAAATTG GGTCGTCTGAGACTAGAGAGGCATTTATTTAGTTGTAAACTTAGGAAAACAGCGC
CDS sequence (LotjaGi3g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGATCAACATCAACATCAGCATCAACGTTTTTCCATGATTTTCTCCACCGCATGCGACACCCTGCTTCCCTCGA CCTCGTCCGAGCCATCAAGAGCTTCATTGTGTCATTTTCATTTTACCCTCCAAAACCTGAAAATGATGGGAAAAGAGTTC AAGACTTCTTTCTGTCTATGGAAGTTACAATCAGAGATCATCCATTGTGGGCCAATGCCACTGAAGATGACATTGATTGT GCGATGGAGGGATTAGAGAAATATATATTGACTAAATTGTTCGCTCGGACATTTGCTGCTTCTCCTGAGGATGCAAAGAT TGACAATGAAATCTCTGAGAAAATATGCTTGCTCCAAACCTTTCTGAAGCCTGAACATTTGGATATACCACCAATTCTTC GTAATGAAGCGTCATGGCTGCTTGCAGAGAAAGAATTGCAGAAAATCAATGCTTTCAAAGCTCCCCAAGAGAAACTCTTG AGCATTATGAATTGTTGCAGGGTCATTAACAATCTGTTGCTCAATGCTGCAATGTCTGAGCATGTGCCAGCCGGGGCGGA TGACTTTCTCCCTGTGCTTATATATGTTACGATCAAGGCGAATCCTCCAATGTTGCATTCTAACCTCAAATTCATCAAGC TGTATCGAAGGCAAGCAAAACTCATCTCAGAAGCTGAATATTATTTCACAAACCTTGTGTCAGCCAAGACATTTATAGCT GACTTAAATGCTAAATCCCTTACAATGGATGAAATCATATTCGAGGAGAGCATGCAAGCAGCCAGATTAACCAGCAGAGT CTCAAGTGTAAAACCCTCTACATGTCAAGCAAGCCAGCAAGGGAAGAACGATGGCAGTTTTTCGAAGAAAATGCACCTTA AACGTGATGATACTGGAGTTTTTCAAGTTTTGCAACATGAAACAAATTATCCATACACGGAAGCTAAGGGTGAAGAGCTA GCAGTTGAAGATGTTGACATATTATTAAATTACTACAAGGATTTAGTTGCTAAGTACACAATCCTGTGCAAAGCTATCGA TTGCCTTTCAGTGCCAGAGAAAGAACCCCTCCTTCATCATCTTGAAATGCAAGGAGCAGGAAGTCTGTTTTCCCAGCACA ACAAAATCAACACAAACACAAACGACCAAACCATCTCAGAAACACCAAGATGA
Protein sequence (LotjaGi3g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSTSTSASTFFHDFLHRMRHPASLDLVRAIKSFIVSFSFYPPKPENDGKRVQDFFLSMEVTIRDHPLWANATEDDIDC AMEGLEKYILTKLFARTFAASPEDAKIDNEISEKICLLQTFLKPEHLDIPPILRNEASWLLAEKELQKINAFKAPQEKLL SIMNCCRVINNLLLNAAMSEHVPAGADDFLPVLIYVTIKANPPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIA DLNAKSLTMDEIIFEESMQAARLTSRVSSVKPSTCQASQQGKNDGSFSKKMHLKRDDTGVFQVLQHETNYPYTEAKGEEL AVEDVDILLNYYKDLVAKYTILCKAIDCLSVPEKEPLLHHLEMQGAGSLFSQHNKINTNTNDQTISETPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 346 | 338 | 8.3E-143 | – | |
| PANTHER | 9 | 346 | 338 | 8.3E-143 | – | |
| SUPERFAMILY | 10 | 251 | 242 | 4.58E-59 | ||
| Gene3D | 20 | 100 | 81 | 1.7E-31 | – | |
| Pfam | 30 | 94 | 65 | 1.5E-11 | ||
| Gene3D | 101 | 265 | 165 | 1.6E-57 | ||
| ProSiteProfiles | 105 | 248 | 144 | 39.63 | ||
| SMART | 138 | 257 | 120 | 3.8E-23 | ||
| Pfam | 142 | 242 | 101 | 1.1E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0330000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…