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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0331600 |
| Transcript ID | LotjaGi3g1v0331600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uridine kinase; TAIR: AT1G58210.1 EMBRYO DEFECTIVE protein; Swiss-Prot: sp|Q8RWD7|EMB74_ARATH Protein EMBRYO DEFECTIVE 1674; TrEMBL-Plants: tr|K7LB36|K7LB36_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0331600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:70055101..70057989) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTTTTGACGGTCTATTTATTCAACTTTAAAATAGGGAGGATTTATTAATTTGAACACACGGTCCGTCCACTCAGTT CAGTCACTGGTTCGAAATTTGGAATGCTATTGTACCACTCTCGGCGCGAGCACGGAGGCGTAGGCATTCATTCATATCTG ATATTTTCCAGATAAAGGTAATCCTTCAATTCTCCAATGCACATTTTTGTAACTATTTGTTCGGTTTTACCTTGTTCTTC TTCATGCCTTTAAGGTGTTTGTTGAAATGACAATGAAAGACTATTGATATCTGAAATGTATGTTTGATGATTTTCCAATG CATTTCATGAAAAATTGAATTTCTGTATTATTCAAGATTTCTTCATTTGTGTATGTTTTGGATGAGTTTCATGCAATTTG GTCATTTGGGTATGCAGTGCAGTGCCCATCAGGAACCAGAATGGAAGAAAGCAGCAGGGATTTTTCCAACACCCAATTTG GGTCTTCTTTTGATCCAACTTCTCCTCTCTCCAACACCAAACCCATCACTCCCTCCCTATTCAAATCCAAACCTGTATTT CCCCTTCTCTTCTTTTGTTTCCTTTTAATTAACTGAATCAACATACAGTACAATACAATACTCTACTTATTTTGTAGGTT TTCTTACATGAATGGTGGCTCGCAAAGCCGCAAAACGAACGTGGGGGTTTAGCTGTTGGCGGCGTTGCTTCGATGGAGTA AAATTTTAATAGTATATTTACTTTTGTATTTTAGTTTGTTCATTGGTTCTCTTAGTAATTGCAATTTCTACAATGCAGGA GAGAGAGGGTGTTTTTGTCAGCAGTGATTGCAAAGAGACATGAGGCTAATGTCCTAGAGACTGAAGATGGCATCACAGTT GTTTTCCGTGGTTTCATCAACACTAATCGGACATGTGAAAATGGTTTTCCATCTGAGGTAAATCACATTTCCTTTTTCTT TGGTTTTACCCGACTCTATTAGCTTCAATCAATCTTGTTCTTCTGCTTATTACTAGTATCGCATCAATGCATACCGCTGT GCCTGTGTTGTAGTTCAATTCTTGGGAAATTATGCTTCGCTTTTTTCTTCTATAGCCTTGACTTAGGGAAATAGGAACCC TTTAAATTGAGTTTGTCTGTAAAGTGAGCAAGTGAGGCTACATGCGTGTTTGGGTCAGCGTTATCAGAATTGATTTATAT TTGGATATATTTCTGAGAAATGTGAACTTCGTAGGGTATTGTTGTGAAATCCAATTGTGAAGTCCGACGATTGATTGTGT CCTCTGCAGAAGCTAGGTTAGGATTTGTAGCTCCATTCCGGAATTGATTCTGAAGCTAGAATCAGTTGTTTAAAGGCAGT ATAACACCCAAAAATTGATTTTGATAGTGGGTAATCAATTCTAACACTTGAAAGAGTGAAGCCAAACATGCTATTTAGCT ATCATTGATAAAGTTCATCCAAATGTTGACCATAAAAATCCAAGAGTGGATATAGACCCTTATTTTCTCATTTAGCCAAA CTCATTTGAGAAGAGTTTTTTTTTTCTGACTTAACACACCTTATCTGCTACCCCTATAACTGACCCATCTCATCCTCCAT TTTTTTTATTTTTAAGGAGTGGGGATCTTTTATATTCAAATTTTAAATGTGTTTCGTCGATAATATACTGCTAATTAACA CACTTTTCTGTACCCAACAAAGTAGACACTTTTATATGCCAATCACATCTAATTAGAGTATCTGACATAAACTGTTGTAT GCTCGATTGGTACCATATGAAACATGTGATCCTCACCTCAGTGCAACTTGCTGAATGAGTTTCATTGTGAACTATTCTAG TGAAAACATTAGTAAGTAAGAGCAATTCAGGGGAACAGAAGTGACAAATTGGGTTATGGGCTTATGGCATTTTGTGCAGT GGAGATAAAAGAATGCTGAGTTGATTGGTTGGGCAAGAAAAAGATCAGAAATGATTGTATCCAAGAAAAAAAGTTGAAGT GCCATTTATTGAGGAAAAGAAGACAAAAATCAGCCTGGAACAGAAAACTTGTAGAAGCTATCCATGTTCAAAGTGGATAA AATGGTGGTGAAAAAAGTAAGATAACCTATTAAAAACAATTTTCTTCTAAATGGTTATACTGAAAATCTTGTTCTGCTTG GATGTTTTATTTTACTAAGCTAGAAAGTTCCACATCGTTGTAATTGATGAGCTTTTCCGACTAGCAACAAAGACTTTGAG CACTTGGCACCAAAATTATTGCTTTTAAAATATACAGGTTCCTGCATGGTTTATCATTAGGATTACAATTTCCCAAGTTC ACTAAATGTTCAATGTCTTTCAACAGGTATATCGCCGCTTCTTGATTGGATTTCCCCACGATTGGAAAAAGTATTCAGCT CACAATTTAGGTGATGAATATATTGATGGAGTGTCAGGTGTTGCAGTTGAAAGCCAAACTGGAAATCCTGTTTCTTGTAC AGGATTTTCTGGAAGAAGCATGGTTGAATCTCCAAAAACCCCAATTTTTTTGGAAAAAGACCAATCAGCAAGTGACCCCA AGGAGAAGCAACGAAATAGGCAAGAGATTATAGAGGACAGAGATGATTCCTGTAGTAGGAGGGTAACTAGAAGCATTTCC AAAAGAGGTCACACAATGCTTGTAAAAGATAAGAAGGCTAAAGTAACCTGTGTTAATTCTCCTGTTAGAAGATCTCCCAG ACTATGTAATTATAGAAAATAATCTGTTATGCTAAAATAGTGGCGGGTAAATGAAAATGTAAAAGGAATCAATCAGTTTG TTATTTTGTGATTGAAATATGAAAGATGTTAATTGTTTTCGTACATGTGTTTGTATTAAAACTAATTGCATTTCAGTAAA CAACACTTC
CDS sequence (LotjaGi3g1v0331600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAAGCAGCAGGGATTTTTCCAACACCCAATTTGGGTCTTCTTTTGATCCAACTTCTCCTCTCTCCAACACCAA ACCCATCACTCCCTCCCTATTCAAATCCAAACCTGTTTTCTTACATGAATGGTGGCTCGCAAAGCCGCAAAACGAACGTG GGGGTTTAGCTGTTGGCGGCGTTGCTTCGATGGAGAGAGAGAGGGTGTTTTTGTCAGCAGTGATTGCAAAGAGACATGAG GCTAATGTCCTAGAGACTGAAGATGGCATCACAGTTGTTTTCCGTGGTTTCATCAACACTAATCGGACATGTGAAAATGG TTTTCCATCTGAGGTATATCGCCGCTTCTTGATTGGATTTCCCCACGATTGGAAAAAGTATTCAGCTCACAATTTAGGTG ATGAATATATTGATGGAGTGTCAGGTGTTGCAGTTGAAAGCCAAACTGGAAATCCTGTTTCTTGTACAGGATTTTCTGGA AGAAGCATGGTTGAATCTCCAAAAACCCCAATTTTTTTGGAAAAAGACCAATCAGCAAGTGACCCCAAGGAGAAGCAACG AAATAGGCAAGAGATTATAGAGGACAGAGATGATTCCTGTAGTAGGAGGGTAACTAGAAGCATTTCCAAAAGAGGTCACA CAATGCTTGTAAAAGATAAGAAGGCTAAAGTAACCTGTGTTAATTCTCCTGTTAGAAGATCTCCCAGACTATGTAATTAT AGAAAATAA
Protein sequence (LotjaGi3g1v0331600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESSRDFSNTQFGSSFDPTSPLSNTKPITPSLFKSKPVFLHEWWLAKPQNERGGLAVGGVASMERERVFLSAVIAKRHE ANVLETEDGITVVFRGFINTNRTCENGFPSEVYRRFLIGFPHDWKKYSAHNLGDEYIDGVSGVAVESQTGNPVSCTGFSG RSMVESPKTPIFLEKDQSASDPKEKQRNRQEIIEDRDDSCSRRVTRSISKRGHTMLVKDKKAKVTCVNSPVRRSPRLCNY RK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 7 | 24 | 18 | - | – | |
| PANTHER | 21 | 136 | 116 | 6.3E-80 | – | |
| PANTHER | 21 | 136 | 116 | 6.3E-80 | ||
| Pfam | 39 | 127 | 89 | 5.8E-26 | ||
| PANTHER | 138 | 242 | 105 | 6.3E-80 | – | |
| PANTHER | 138 | 242 | 105 | 6.3E-80 | ||
| MobiDBLite | 174 | 206 | 33 | - | – | |
| MobiDBLite | 177 | 205 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0331600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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