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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0340800 |
| Transcript ID | LotjaGi3g1v0340800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SAUR-like auxin-responsive family protein; TAIR: AT2G24400.1 SAUR-like auxin-responsive protein family; Swiss-Prot: sp|Q9SGU2|SAU71_ARATH Auxin-responsive protein SAUR71; TrEMBL-Plants: tr|I3SN83|I3SN83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0340800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71543358..71544278) extracted from Lotus japonicus Gifu genome v1.2.
TTCACACTCTAGTCTCAACATAGCAAGGAAAAAGAACATAACCATCAAATAGTTGTTTCCTAGATGGATTCAAAGAAGTC CAACAAGATCAGAGAGATTGTTAGGCTTCAACAAATCCTCAAGAAGTGGAAGAAAGTTGCAAATACTTCCAAGAATGACT CTGTCTCTGCGGTCACCACCACCGCCGCCACTACCACTGTCACCGCCACCAGTGGAAGTAGCAACAAAGGCATCAAGTTT TTAAAACGAACTTTGTCATTCACAGATGTTTCTTCTTCCAATAATGACATCGTTCCAAAAGGGTTTCTTGCTGTTTGTGT GGGGAAAGAACTCAAGAAATTCATCATTCCCACACATTACTTGAGACACCAAGCATTTGAGATGTTACTGCAAGAGGCCG AAGAGGAATTTGGTTTCCAGCAAGAGGGTGTGCTCAAAATTCCGTGTGAAGTTTCAGTGTTTGAGAAGATATTGAAGGTG GTGGAAGATAAAAAAGAAGCATTCCTCAGCTTGCATGAGTTTGGGTTGAGTGGAGAGAACAACAAGATTAATAGTTGTGA AGTTACTCCCACTCATCATGCTCAAGTGTGTAGATGATCAACATAAGAATTCTTTTTTGTCTCTTTTCATTTATCTTCTC ACAGTTCTTGCTCTTCTAAATGATTTTCTTTCGAGTTTGTGAAAGACAATACATTAATTAGAAAGAAGTGAGAATTATAT TAATTACTCTGAGTGGGTTCTTCATCAATTTTTTCTTGATAGCTTACAGGTTTATAACTCTATCCATATGATATATTCGT AAACCATTTTAATTTGTTTCTTTACATTGCAACATATTAATAATTTCCTCTCAAAAGGTTATATGATGTTCAATTTTCAC TCCTAATGTAAGGCTATGTCGGTACGTGAACAATTATAAGA
CDS sequence (LotjaGi3g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCAAAGAAGTCCAACAAGATCAGAGAGATTGTTAGGCTTCAACAAATCCTCAAGAAGTGGAAGAAAGTTGCAAA TACTTCCAAGAATGACTCTGTCTCTGCGGTCACCACCACCGCCGCCACTACCACTGTCACCGCCACCAGTGGAAGTAGCA ACAAAGGCATCAAGTTTTTAAAACGAACTTTGTCATTCACAGATGTTTCTTCTTCCAATAATGACATCGTTCCAAAAGGG TTTCTTGCTGTTTGTGTGGGGAAAGAACTCAAGAAATTCATCATTCCCACACATTACTTGAGACACCAAGCATTTGAGAT GTTACTGCAAGAGGCCGAAGAGGAATTTGGTTTCCAGCAAGAGGGTGTGCTCAAAATTCCGTGTGAAGTTTCAGTGTTTG AGAAGATATTGAAGGTGGTGGAAGATAAAAAAGAAGCATTCCTCAGCTTGCATGAGTTTGGGTTGAGTGGAGAGAACAAC AAGATTAATAGTTGTGAAGTTACTCCCACTCATCATGCTCAAGTGTGTAGATGA
Protein sequence (LotjaGi3g1v0340800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSKKSNKIREIVRLQQILKKWKKVANTSKNDSVSAVTTTAATTTVTATSGSSNKGIKFLKRTLSFTDVSSSNNDIVPKG FLAVCVGKELKKFIIPTHYLRHQAFEMLLQEAEEEFGFQQEGVLKIPCEVSVFEKILKVVEDKKEAFLSLHEFGLSGENN KINSCEVTPTHHAQVCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 157 | 155 | 9.4E-67 | – | |
| PANTHER | 3 | 157 | 155 | 9.4E-67 | – | |
| Pfam | 21 | 139 | 119 | 9.2E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Response to auxin | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. |
Expression pattern of LotjaGi3g1v0340800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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