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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0341400 |
| Transcript ID | LotjaGi3g1v0341400.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF1666 family protein; TAIR: AT3G20260.1 DUF1666 family protein (DUF1666); TrEMBL-Plants: tr|A0A072UGG4|A0A072UGG4_MEDTR DUF1666 family protein; Found in the gene: LotjaGi3g1v0341400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:71619953..71622724) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATTTTTTGAAAATCAAGAAGTTCAGGAAATCTCAGAAAGGGAATGGAGAAAAGGATTTGACGGACAAGGCAGTGCC GGAGCCTGAAGAACCAAAGACTAACACTGGCGGTCCTGATCAGTGTAAATCAGAAAATGCTGATCCTGCTGGTGACGCTG AGGACGACGATGATTTTATTACCAACGAGGTCAAGAGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATT CCTGAAGAAGATTCCTGCCCGGAGGAGGGGGAGGATGAAGAGGAAGAGGGGGAGACTAGCTCGAACGAGTGGAGGGATGT GGAGGCAGAAGGTCAGCAGTGGTGGCGTGGCTTTGATGCTGTGTTTGAAAAGTACTGTGAAAAAATGCTATTCTTCGATC GGATGAGTATGCAGCAGCTTAATGAAATTGGCAAAGGTAGATTCTTTTTTTAATCTTACCATCTGGTCATCTCTGTTGGT ATTAGTAATGGCTGGGAATATCTATTTAGGTTTTTGCATTGGGTTCATTTAGGTGTTTTGTCTGTTATACTTATGATGTG ATTAGAACAATAACAGATGCTTGACAAAATTTGCTCTTTGCTATTTCTTTCCGGAATATGGGAATGTTTATTCAGATATA CGATCTTGCAAGCATCGCGGTATCTTATCAAGTGAAATTTGATTTACTTGAACATTTGAATTATAAGTTCTGCTATTAGA GATCCACGGTGCTTAAAGGTGTGCTGACATTCAAATAGTACCTCAATTGTGATTTTTTGCGATTAAGCTTGGCCCATGTG ATACGGGTTGACCCGTTTCTTAAATCGGGTTTGGCTTGTTTCTTAAATGTGTCGCTGCAAAACCCGTAGTGTATTTAGTA GCTGAGCCTCGCTTCTTATCCTCACTCACGTTCGCGAGTCCCCTTCTCTCCCCCGCAGCACCGGTGATGACTCTCTACCT TTGTTGACGAGGCTCCTCCTCCACCGGTGACAAGGACAAGGACTGAGGTTGGTAAGTCAAGTGGTGGTGTTCGGACTGAG GCTGGTGCCAAGGCTGTTTTAATATGACATTCCTATGAATTAAGAGTTATTTTTATGACTTATGAGTACAGCTTTATTTA AGTAATTCTAGTTATTTAATTTTTGAAGTGTTTCTTTTCTTATTTGTTCTATTTTATATGCGTATTATAGAATTTTACTA AAGTTTAGGATTAATATTACGGTTATGTGATTTACGATTAACACATCCCTCCCCGATTAAAGGCATGATTCCGATTTTGA CTATCTTGGTTTTAACTACACAACGGAGTGTATTATATATACTCGGCAGAATAAATGCATGTTATTGTTGTTTCCTTATA AACAATGATTACGCTACCTAATTACAATAATTATGAGATATTTTACCTATTTACATTATTTCTAACATTACATAATAAGT TCTTTGGTGAATAATAAGTTCTTTGGTGAAGAACTGAAATCTAGTTTTATTGAATTTGTTGAAGGTATTATTTGGAAACT TGGAGATAGTCATCAGAATATTTTACCACCTTAAAATTCCAACTGCTAACAAAATATACTATTGCTATCATCTCCACATT TGTTATATCATGTGATATGCTACATATTCATTGTTAGGTTCTCTACAAACTTCAACTCAATCTCCAAGATCTGCGTCGAA GAAGTTGACTTCTCCTCTTCGATGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGAGGATACTGAACATCTTCAACAGC CTGGAAATGATCCCTACCTGGATATTGAAATGGCGTATGTTGGTCAAATTTGCTTAACTTGGGAGGCACTTCATTGTCAA TACTCGCATACAAGTCAGAAGATATCCTGGCAACCTGAAAATCCTACCTGTTACAACCATAGTGCGCAGGAGTTTCAGCA GTTCCAAGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTCGAGCAGGGCCCTCGAGCTGAAAGTTATGCTCGCACAA GGAAGGCTTTGCCTAAACTGCTACAGGTTCCTAATATACGAGGCAAGTTTTCTGTAAATCAACTACATTCAATTGGGCTT TCATGGATATCACTGAAGTAATTCGCAATCTGAGAAAAAAAGGCACTTTTTCATTGGTTGTCTTGTTTGTCACTGAATGT AAATGTAAAATTCTACATTTGTCTCGGATGTTAATGTTTGTAGGACTAACTATCCAACTTCGTGAATCTATTCAGGTTCA GATCATGAATTAACAGATGATTCAGACATGAGAGTTCTTGCTCCTGATCTTATCAGGATAATTGAAAATTCTATCCTCAC ATTCCACCTTTTCCTGAAGAGGGACAAGAAAAAGTCAAGTGGTGTTATCAACCTGTTTGGAAACCAGAACCAGCTTGCAA CTCCTCTTCAGCAGGTTCAATCTACACTTGATAAGGTAAAGTCAGATCCTTTACCTTGTGATGCAAGTTTGCAATTTTAT AGGACTAAGAAATCATCCATCTTACACTATTTTCTTGTAAATGCAGAAAGTGTTGAAACTTAAGGAACTGCGCAGAAAGG TGAAGGGTTGGAAAAAAAATTCCTGGCCCCAGAAGCACGAGGACATTCAGCTATTGCTTGGCCTTATCGATGCGAAAATC ATATCAAGGGTTCTGAGGATGACGCGGATGAGTAGAGAACAGCTGTTTTGGTGTGAAGAAAAGATGAAGAAACTGGATTT ATCAAATGGTAGGTTAGAGAGGGATCCATGCCCTATCCTCTTCCCTTGCTAG
CDS sequence (LotjaGi3g1v0341400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTTTTGAAAATCAAGAAGTTCAGGAAATCTCAGAAAGGGAATGGAGAAAAGGATTTGACGGACAAGGCAGTGCC GGAGCCTGAAGAACCAAAGACTAACACTGGCGGTCCTGATCAGTGTAAATCAGAAAATGCTGATCCTGCTGGTGACGCTG AGGACGACGATGATTTTATTACCAACGAGGTCAAGAGGAGGCTGAAAGAATTGAGAAGAAACAGTTTTATGGTGTTGATT CCTGAAGAAGATTCCTGCCCGGAGGAGGGGGAGGATGAAGAGGAAGAGGGGGAGACTAGCTCGAACGAGTGGAGGGATGT GGAGGCAGAAGGTCAGCAGTGGTGGCGTGGCTTTGATGCTGTGTTTGAAAAGTACTGTGAAAAAATGCTATTCTTCGATC GGATGAGTATGCAGCAGCTTAATGAAATTGGCAAAGGTTCTCTACAAACTTCAACTCAATCTCCAAGATCTGCGTCGAAG AAGTTGACTTCTCCTCTTCGATGTCTTTCCTTGAAAAAATTTGAAGAACCTGATGAGGATACTGAACATCTTCAACAGCC TGGAAATGATCCCTACCTGGATATTGAAATGGCGTATGTTGGTCAAATTTGCTTAACTTGGGAGGCACTTCATTGTCAAT ACTCGCATACAAGTCAGAAGATATCCTGGCAACCTGAAAATCCTACCTGTTACAACCATAGTGCGCAGGAGTTTCAGCAG TTCCAAGTTCTATTACAAAGGTTTATTGAAAATGAACCTTTCGAGCAGGGCCCTCGAGCTGAAAGTTATGCTCGCACAAG GAAGGCTTTGCCTAAACTGCTACAGGTTCCTAATATACGAGGTTCAGATCATGAATTAACAGATGATTCAGACATGAGAG TTCTTGCTCCTGATCTTATCAGGATAATTGAAAATTCTATCCTCACATTCCACCTTTTCCTGAAGAGGGACAAGAAAAAG TCAAGTGGTGTTATCAACCTGTTTGGAAACCAGAACCAGCTTGCAACTCCTCTTCAGCAGGTTCAATCTACACTTGATAA GAAAGTGTTGAAACTTAAGGAACTGCGCAGAAAGGTGAAGGGTTGGAAAAAAAATTCCTGGCCCCAGAAGCACGAGGACA TTCAGCTATTGCTTGGCCTTATCGATGCGAAAATCATATCAAGGGTTCTGAGGATGACGCGGATGAGTAGAGAACAGCTG TTTTGGTGTGAAGAAAAGATGAAGAAACTGGATTTATCAAATGGTAGGTTAGAGAGGGATCCATGCCCTATCCTCTTCCC TTGCTAG
Protein sequence (LotjaGi3g1v0341400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFLKIKKFRKSQKGNGEKDLTDKAVPEPEEPKTNTGGPDQCKSENADPAGDAEDDDDFITNEVKRRLKELRRNSFMVLI PEEDSCPEEGEDEEEEGETSSNEWRDVEAEGQQWWRGFDAVFEKYCEKMLFFDRMSMQQLNEIGKGSLQTSTQSPRSASK KLTSPLRCLSLKKFEEPDEDTEHLQQPGNDPYLDIEMAYVGQICLTWEALHCQYSHTSQKISWQPENPTCYNHSAQEFQQ FQVLLQRFIENEPFEQGPRAESYARTRKALPKLLQVPNIRGSDHELTDDSDMRVLAPDLIRIIENSILTFHLFLKRDKKK SSGVINLFGNQNQLATPLQQVQSTLDKKVLKLKELRRKVKGWKKNSWPQKHEDIQLLLGLIDAKIISRVLRMTRMSREQL FWCEEKMKKLDLSNGRLERDPCPILFPC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 60 | 60 | - | – | |
| PANTHER | 1 | 428 | 428 | 1.2E-214 | – | |
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 428 | 428 | 1.2E-214 | – | |
| MobiDBLite | 79 | 107 | 29 | - | – | |
| MobiDBLite | 84 | 101 | 18 | - | – | |
| Pfam | 194 | 427 | 234 | 8.4E-90 | ||
| Coils | 338 | 365 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0341400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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