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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0345700 |
Transcript ID | LotjaGi3g1v0345700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Zinc finger, B-box; TAIR: AT3G21150.1 B-box 32; Swiss-Prot: sp|Q9LJB7|BBX32_ARATH B-box zinc finger protein 32; TrEMBL-Plants: tr|I1KGP6|I1KGP6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0345700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72334942..72337019) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAAATTGACCCTATGGTGGGGTTCATAGCATTAACATATAACATGAGTCGACGAGACTAGTTCCTTCAAATATACAA ATATATACATAACATCTACATACACACTCTCCTCTCATACTCAAACTCAAACTCAAACTCAAACTCATTGATCAAGATTC TGTTTCAACTCTCAATTCTCAAAACCAAAAACTGCACAACACAAGAACATGAAGAAGGGTGGCAAGGCTTGCGCGCTTTG CAATCAACAAGCTTCACTCTACTGCCCCTCCGACTCCGCCTTCCTCTGCCGCAACTGCGACGCCACCGTCCACGGTGCCA ACTTCCTCGTCGCACGCCACCCCCGCCACCTCCTCTGCTCCACCTGCAACCGTTTCGCCGGAATTCACATCTCCGCCGCC GCACCCTGCTACCGCCAACCAACTTGCTCCTCCTGCTCGCCGTCCGAGACCGATCTCCTCTCTTGCTCCTCCTCCTCCGA GTCTTGCTCCACTTCCCCGAAGAAGGTTCACGTTGGGAGGGTGAGAGTGAGGGTGAGGAGCGTCTCTTCGAGTTCCGTGA CCGACGAGTTCTCTCCGGCGGCGAAAAGGAGGCGGGGGAATGACGGGTCGGTGGCGGCGGCGGAGGAGGTGATTGGGAAA TGGAGCAGGGAGTTAGGGTTAGGGTTAGGGGCGGATGGTAACCGTGTGGCGACGGAGGCGCTGGGGTTTTGTGTTGCAAC GTGGAGGTTCGTTCCGTTCAGGGTGGTTGCTGCGACGTCGTTTTGGTTGGGCTTGGGATTTTGTGGGGACGGGTCGCTTG CCACGTGTCGGAATCTGGCGAGGTTGGAAGCAATCTCCGGAGTGCCAGCTAAGCTCATTCTGGCCGCACATGCCAAGCTC GCACGTGCCTTCACGCTCCGCCGCGAATTGCAAGAGGGATGGGACGAGTCTTGAAGCCACTAAATTCTCTACCAGCCAAT ACATTTTGTGTGAATATCAAAAAACAGAATTCGAGTGAACGGTTAAATTCGTCCGTGAAAGTGTTACGTGTTAATAAGTT CGTTTCTAAAAGAAGTAAATATTTCCTTAGTCATAACTAATTGTGTAAAATGTTGGTAAAATTTTAACTAGCAATGTTTT ATTGAATTTCAATGAGTTAATTTGACCGACATTTTACATAATTATGAAGCAAGAAGTGTTTGCTAAGTTAAGGGATGAAT TTATCTGCACCAAACACTTTTAGAGATCAATTTGATGGTTCACTTGTTTCATTTCATTTCTTTCTTTCTTTGTCAATTTA GGACTAGGCTACTGTGATCATTGTTGGTTATCTATTTTATCAAATGTGTAATGAATGGAATCAACAAATTCGCAAAGAAA AGGAAAGTGAGTTGAGTAATGTTCAAAATGTGCTTAATTGGAATGCAAATATTGCAAAAGTGATTATGCAATTGTGAAAT TTCATTATGTGGACAAGTCTCATTCACTAGATCAATCAATGTTGTGGCGTAAGAAAAATTGAACCCAAAATGTGTGACAC GGGTTCACGATGTTGCATCTAATGATTCTAAACTTGGTGCCACTCATCATTGTGACGTCTAGCTAATTTTGGTTTTATCA GGCTCAAATAAAAGAATCAATTTTTGTGAACCATTAATTCATGTTGCTGATGCCTGCACGTCTCTATCTTAGTACTGATA TTTGGAAATGAAAGAAAGGCACTGGTAGGTGCTACTTCAAATCGAAAAAACCAATATCTGAATTCTGCCAAGAAATTTTA ATTTGTTTTAGTTGAGGCTCATTCATTTGCTTCGGAGCAGGCACCAACCATAATTGATGTTCTATCATTCATGGAGCACC AAATTTAAAACCACATGTTTGTTACCTTATACTGCTTTTCACAATATATGGCGTGTAATAATCAATACACCGCAACAACC TGAAAATATCATGAGGTTACATAAAGACCCAATCAAAGAGGTTGAGCTACCACACAAAGGAAGTTGTGGCCAAAAAGTGC TTCTCAAAAGTGAGGTCTGAGAAGCCTTGATGAATAGCAAATGCAGTACTTCATTGTGGTTGCTGTTTAAAGTTTTTG
CDS sequence (LotjaGi3g1v0345700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAAGGGTGGCAAGGCTTGCGCGCTTTGCAATCAACAAGCTTCACTCTACTGCCCCTCCGACTCCGCCTTCCTCTG CCGCAACTGCGACGCCACCGTCCACGGTGCCAACTTCCTCGTCGCACGCCACCCCCGCCACCTCCTCTGCTCCACCTGCA ACCGTTTCGCCGGAATTCACATCTCCGCCGCCGCACCCTGCTACCGCCAACCAACTTGCTCCTCCTGCTCGCCGTCCGAG ACCGATCTCCTCTCTTGCTCCTCCTCCTCCGAGTCTTGCTCCACTTCCCCGAAGAAGGTTCACGTTGGGAGGGTGAGAGT GAGGGTGAGGAGCGTCTCTTCGAGTTCCGTGACCGACGAGTTCTCTCCGGCGGCGAAAAGGAGGCGGGGGAATGACGGGT CGGTGGCGGCGGCGGAGGAGGTGATTGGGAAATGGAGCAGGGAGTTAGGGTTAGGGTTAGGGGCGGATGGTAACCGTGTG GCGACGGAGGCGCTGGGGTTTTGTGTTGCAACGTGGAGGTTCGTTCCGTTCAGGGTGGTTGCTGCGACGTCGTTTTGGTT GGGCTTGGGATTTTGTGGGGACGGGTCGCTTGCCACGTGTCGGAATCTGGCGAGGTTGGAAGCAATCTCCGGAGTGCCAG CTAAGCTCATTCTGGCCGCACATGCCAAGCTCGCACGTGCCTTCACGCTCCGCCGCGAATTGCAAGAGGGATGGGACGAG TCTTGA
Protein sequence (LotjaGi3g1v0345700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKKGGKACALCNQQASLYCPSDSAFLCRNCDATVHGANFLVARHPRHLLCSTCNRFAGIHISAAAPCYRQPTCSSCSPSE TDLLSCSSSSESCSTSPKKVHVGRVRVRVRSVSSSSVTDEFSPAAKRRRGNDGSVAAAEEVIGKWSRELGLGLGADGNRV ATEALGFCVATWRFVPFRVVAATSFWLGLGFCGDGSLATCRNLARLEAISGVPAKLILAAHAKLARAFTLRRELQEGWDE S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SMART | 3 | 49 | 47 | 4.1E-8 | ||
ProSiteProfiles | 3 | 49 | 47 | 8.916 | ||
PANTHER | 6 | 241 | 236 | 7.1E-77 | – | |
PANTHER | 6 | 241 | 236 | 7.1E-77 | – | |
Pfam | 6 | 43 | 38 | 1.4E-5 | ||
CDD | 8 | 46 | 39 | 1.35195E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi3g1v0345700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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