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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0346900 |
| Transcript ID | LotjaGi3g1v0346900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Snf1-related kinase interactor 1, putative; TAIR: AT1G80940.1 Snf1 kinase interactor-like protein; Swiss-Prot: sp|B8AE37|HDR1_ORYSI Protein HEADING DATE REPRESSOR 1; TrEMBL-Plants: tr|I3SHP4|I3SHP4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0346900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72460212..72465710) extracted from Lotus japonicus Gifu genome v1.2.
CAATTTGTTTCATTGCTCCAAAGGTCATTCCTAAGCAAACAAATAACTTTTTTATTGGAAAAGAATAGACAAGGAAGGAG GTAAGACAGGGTCCACATAAACAGTCATGGAAATTTTCACCCAACTGTGAAATCTCAACCGTTGAAAGAAGAATGATCTG ACCATCTTGGTCCCAGACAATTATCAGCATATGCTTGTAACTTAACTTGTAAGGTTGTTGATGACCTTTTGGATGGTTTG GTTGGTACTTGGTGGCAAAGATCAAGGAGAAAAGCCAAACAGCACCTCCTAAGAAATCTCTCTCTCTTCTTTCTTTATGC CAGTGTTGAAGTTGTGAGCTTGAAGCATCTGGTTCTGCGTTTTTATCCTTGTATGGAAATTCGTGGTAGAGACAGGAAAA TGGTTATGGATGATGCTTTGAATGCTTTCTCTCCTGTCTCAACCCCTAGATTTGACTGGAAATCCAGAAGGAGATCAGGT ACCTCCTTGTTCTTAACTTCAACTATGATTTTCTTATGTATCAACTTTAATATTCTTGGTGATTTTTGCATGGAATTTGC TAAATTTACTAGCTTACTAGTAATTTTTCTTGCAAATATTTTATCTGTGAATTAGTATAGTTTTTGGAACTGAGATTTTC CTTTCTCAATTGTCAATTTAACTCTCTTTCTGTAACTAAGATTGGTTTCTACTTTCTACACTTTTTTGCAAAATTATCCA CTGTTACAGAGAAAGAGAGAAGCGTACAACTGGGGTTAACAGTTGGTGTGACTTTAATGTTACGTTGCTTCATTTGCAAT AATTGGTTTACTGAACTCCGGCTCTGTCTTGTTATCAATTAGGATCCAAATTTGTTATCATGAAAAAAGAAAAGATGAAA TTAATTTCTTTGAGTGATTATTTGCTTACAATTATGAGCTAACACTATCATTTTGATGAAATAATATAATAAAGCAACAC GACAATTTGAAGAATCTTATGAAAGTTCGTGTGATTCTAGAAATTGGTGATATATTGAATTGTGTGAACTGTGAAGGACA AGGGAAAAGATGCATGTGGCTATTGGGATTTGGGATAGTGTAGGCATCATCTTTTATTAAATTATGGGACACCTCACCCT GCATCCCTCCAAACAAGCCTTTCCAATGTAGCCTCCTGCTTGGTTTCCTTGCATTTCTGACCTTTCAATTTTACTTTGTC ACTGTCTCTATGCGACACTTGAGGGTGTAAAATTGAGCTGTGCAACTAAACACTACTCCAAGCTCTTGAATCCTACTAGT ATTTGAAGTGCTGTTTGCCCTAGGAAAAAGTCAATTTTAGGTTGAGATAACTTATTTAAGTAAACTTATCAAATTAGCTT ATAAATAGGTGTTTACCTTCATGTGATAAGCGTTTATAGCTATAAGCACTTAACTAAGTTGTTTACCCCACACACTTGAT CACTCAAGTGCCGTTTTACTCTGATTTATATCTAGTAATCTTGGCATGTCAAATCTCTGCTCTTAGAGCAAGGCATCAGT TGAGACTAGGAGCTCATGCCTTGAGTACCCCCCTTTCAAATTTCAGTATCCCATAGTATAGCTTCTTATTAGTAGTTTTA ACTTCTTTTAGTTGCCTTATTAGTATTGGCTTATGTATTATTTAAGCAATGATGATAGTTCATGAACCATATTTGAAGTA ATTATTGGGTATATATTTGTTGAATGCAATGGATATACCTACTTTGGTGAACAATTTATAGCAATTGGAGTCTTCGTTTT TAATCTTTATGCTAAACAAATGCTTCTATTAGTTGTGAAAATTTACTGTCTCTAAATGAGTTGCAAAAAGAATTGTAACT TGTTAACCACAGCTAGCGGGAGGAACTTAGAGGTATCGGTAGACACTGCTAAAACACCACCCACCAAGCAGGAAGATACT CCTCCTCCTAATGTGGAGATGCAGGACGCATCAGCGGTTACTGAGCTTGAGCTTTCTGAGCGTCGAAAGGCCTTGTTTGA ACCATTAGAACCTATAAAGAACATCAATGGCCGACGACCCTCTGCTGAGTCTCTGCTTCCTCCCCCTGATTTTGACGCCG CAAACTATCCAAAGGGATGGCTCATCGGAAAGAAGCGAAAGCTTGTCAATGTGGATGTCGTTGAAAGCATGCGAAGGATT GCCATCCAAGAAATGAACAGAAAGGTTTCTTTCCAAATCCGTTCCAAGTTTCTTCAAATACCTTAACTTCTAAGCTAAGA CAGAACTATAAGCCTGAGGTATTTGCTGATTGGTTTTTCTTCTTTGTTGCAGGACAGGGAAATTGACGGGCTAAATGAAC AACTTGATGAGGATTCACGATGCCTTGAGCACTTGCAAATCCAGCTTGTGGAAGAACGAAGCAAACGTGCTCGAGTGGAA AGAGATAATGCAATGCTGCAAGAGCAAGTGAACATGCTTATGAACATGTTACAAGAAACTGAGCCAATGGGAGATGAAGA TCAAGACCAAGAAGAACCTTAAACTGTATCATACCCCTTTTGAGCTTGTGTGTATTAAAATTCTTTATTAGACTTTGCCC AGAATGTTTGTTAGGTTGGGCGTATCATGTTTTTACAGTGATTAGAGTGCATAATAGTTATATGGGCTATGGAGACAACC AAACGCTACTTGAAACTATTTATATGTCTTAAATAAAAAATTGTATATCTTTTAGTATGTGTCTCTGTTAATTTATTTGA TGTTGGATATTTCTTTCTCAGCTAAATGATAACATATTATCATATATAATTTTCCAAGTTGATTCTGTGATTAGTAGAAT AATGATGCAAGTCAAAGATCATATTCATCTACTGTTCTGGTATCATTAGGTATAGGATTTCTTTCACACAAAAGTTCTAC ATGTTATTCTCTTATATTGTTCAACTGAAAATACAAAGTGTGCCATAATCTCGGACGGGATTCTTCATCAATGTGAATTT CCGAATCCCATTGAGTTGAGGTAACAGAGATCACATACAATATTCACACTGTTGAAAGACTACATAAGTATTTTTGTGAT GATGTTTTCAAGCTTTAGTAGATCATATTACACTATCTAACTTGATTAACAGAGTCCTCTGGCATGGGAAATAAAAAGTG AGGCAGAGAAGCAATCCTTGGAAGATTATGAAGCAAATCACCAGCTGATTCCTTCCTTGACATGCCTATTCCCTGGTTGC TGCCAGAAGCATCATCTGGCTGACATTCCAAATCAATCACCTTGTTTTTGCATGGTGACAATCGAGTTTGAGTGGAGTTA CTCTCACCAACTTCTCCAACCTTATTTACATCAAAAACATTATTACCATGTCTCATGGTTTTGTCCTCTGCTGTTGGAGG GTCCTTCTGCAGAAGGCTGTATAGTGAGTTCACCCTTGACATGACAAACTTTTCATCAGAGGCTGGTGTGAGCTGAGAGT CATTGAATAAGTATTGTGTAAATTCCTCCAACATGGCATACTGGCTGTCACCACCAAATTTCGAATTCTCAGATGTCATC TGTGTTGAAATGCAATGTCCAATGTGGTTTACAAGATCATCCATCGACATTGAAGGGTGAAGTCCAGGCAATTTTATCTG ATCCAAATTACTAAGAAACTTCAAAGTTTCAGCTCCTCTGCTCCTGAAATCTTTAATTGCATGGCTGTTCATCACTGCAC ATGATAACCAAAGCAAATAAAGCCAAAAGGAATTGCTAAAAAGGTGCATTCACTATCATGATACATTAATCAATAGATAT CAAAGAAAATCCACAGCCATTACCTGTGCTAGGTGAGGTAATTTCTTGGGAAACATTTTCAACAGCTTTACCCATAAGAT TATGTTCACTTCTAGAGGAAGATGATTGAACTGCAGATCCTGATTCCACTTCATGCAATCCAAACAAACTAGGTTGCTCT TCACTTTTACTATCAAAACCATCACTGGATTCAATGTGATCATGAATTGCAGTTCCAGATTCAAAATATGGAGATTCCAA CACCAGCTCTGGTTGTTGGCTCAGAAAGTTGAGACGGGGATCACACTGAATCAGTTTCTCAAAGTGCTTGCCTAACAAAC CTTGGGGGCACTGCATAAAATGTCGCCTGTGACAATTCAAGGAATCATATCATATCACCAACAAATCATACTGAAACAAC CTGAATACCAGAAGAACACCACTTGTATAATACAATTAGTACCTCTGTATGCTGGCCTGTCCACCAGTAAAGTCTGATGT TGCTTGCCACAAGGTATGCTTCCTTGGTTGGGGATTGATCTCTCTAAAAAACAAGGGTCTTCTTGCCAGCTAGAAGAAAC AGGAACACCAACTTAGCATGATACCAACAAAACAAGCATGCATTAACAACACCGTTACAATAAAAAGTTCAACAAAATGG ATGCTTACCACTACTTCAAGAGTTCCTGGTGCATCCTCAGGGTAGTTTGCTTTGAGGGCCATGATATCAGACCAAGGAAT CTCAATCTTATTCTTAAGACAACCATCAAGTACTTCCCACACGAGCTTATGTTTTGCAAAGTAACATTTTGCAACCAAGT CCCCTTCGTACCTAGACTTGTACTGCAAGGACACAACCACCAAAATTACCACAAACAGCACATCACATCACATCAATTTT TGTATCATTACCTAATTCAGCAAAACTATAAACATACCTCCCAAGTACCAATTTTCAAAACAGTACCAGGAAAATTGGAA GCCTTGAGCTTAGAATCCGCAGCAGCACCACCACCAGAACCCTTCTGATCTCCCATTCTGGAGTCATGCTGCTGGGAAAG CCTCATCTGAATCAAATCCAAAAGTGAAGGACTCTTCCTGAGACGCAAACCAAGAGGACTAGGCTCATCAAGAGGATTGT AAAAACCTTGTGGAACTCCAAGGGTATCATCATCGCTTGAATCACACTGTTTCAAAACAAAACAAACCAAGCAGATAAAA ATGAGAAAAAAGAGGGTTTAGAGATAAAAAAAACAAAACCACCCCAAAAATAGAAAGCGAGAAAATCATACAGGGTATAA CAGAAAGATTCAGATTTTAACAGAAAATGAAACCTTGGTTGCAGAATCCAACTTGGGTCGTTTATGGGTGAAAAGAAATG GATCTTCATCATCTTGATTCTCCATCTTCACCTTCTTCTTCAAGCAGAGACTATCCATATCAGAAGGCATTAGATGAACC ATGTTGTTGAGCTGAATCAGGCGAGAAATTCAAGAGGGAAAAAGCTTCTTCTACTTCTTTCTTCAATGGCAATGGCAATG GCGGGCGCTAACAACAACAAGAAGAAGCCAATCTTTCTTTCTTTCTCTCTCTTCAATGTCACGTGCCGCAGACGAAACGA CGCCGTATTTAAAACAAGATAGATACTTCCAGCTAAGACTGAATTTACGAACATACCCTTTATTCAGAACATGACATTGG CATGTTTTGTCGTTTTATGTGGGTAGATTAAGGATTTTGTTCGCAGTGTGAAACGGCGG
CDS sequence (LotjaGi3g1v0346900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTCGTGGTAGAGACAGGAAAATGGTTATGGATGATGCTTTGAATGCTTTCTCTCCTGTCTCAACCCCTAGATT TGACTGGAAATCCAGAAGGAGATCAGCTAGCGGGAGGAACTTAGAGGTATCGGTAGACACTGCTAAAACACCACCCACCA AGCAGGAAGATACTCCTCCTCCTAATGTGGAGATGCAGGACGCATCAGCGGTTACTGAGCTTGAGCTTTCTGAGCGTCGA AAGGCCTTGTTTGAACCATTAGAACCTATAAAGAACATCAATGGCCGACGACCCTCTGCTGAGTCTCTGCTTCCTCCCCC TGATTTTGACGCCGCAAACTATCCAAAGGGATGGCTCATCGGAAAGAAGCGAAAGCTTGTCAATGTGGATGTCGTTGAAA GCATGCGAAGGATTGCCATCCAAGAAATGAACAGAAAGGACAGGGAAATTGACGGGCTAAATGAACAACTTGATGAGGAT TCACGATGCCTTGAGCACTTGCAAATCCAGCTTGTGGAAGAACGAAGCAAACGTGCTCGAGTGGAAAGAGATAATGCAAT GCTGCAAGAGCAAGTGAACATGCTTATGAACATGTTACAAGAAACTGAGCCAATGGGAGATGAAGATCAAGACCAAGAAG AACCTTAA
Protein sequence (LotjaGi3g1v0346900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIRGRDRKMVMDDALNAFSPVSTPRFDWKSRRRSASGRNLEVSVDTAKTPPTKQEDTPPPNVEMQDASAVTELELSERR KALFEPLEPIKNINGRRPSAESLLPPPDFDAANYPKGWLIGKKRKLVNVDVVESMRRIAIQEMNRKDREIDGLNEQLDED SRCLEHLQIQLVEERSKRARVERDNAMLQEQVNMLMNMLQETEPMGDEDQDQEEP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 212 | 207 | 1.8E-100 | ||
| MobiDBLite | 21 | 64 | 44 | - | – | |
| Coils | 136 | 156 | 21 | - | – | |
| Coils | 164 | 198 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of flower development | Any process that modulates the frequency, rate or extent of flower development. |
Expression pattern of LotjaGi3g1v0346900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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