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LotjaGi3g1v0349900.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0349900
Transcript ID	LotjaGi3g1v0349900.2
Related isoforms 1	LotjaGi3g1v0349900.1
Lotus japonicus genome version	Gifu v1.2
Description	V-type ATP synthase subunit D; TAIR: AT3G58730.1 vacuolar ATP synthase subunit D (VATD) / V-ATPase D subunit / vacuolar proton pump D subunit (VATPD); Swiss-Prot: sp\|Q9XGM1\|VATD_ARATH V-type proton ATPase subunit D; TrEMBL-Plants: tr\|I3S2J9\|I3S2J9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0349900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:72782978..72783757) extracted from Lotus japonicus Gifu genome v1.2.

ATGTCGGGGCAAACACAGCGTCTGAATGTGGTGCCCACAGTGACGATGCTTGGAGTGGTGAAAGCGCGTCTGGTCGGAGC CACCAGAGGCCACGCGCTTCTCAAGAAGAAGAGCGACGCTCTCACGGTGCAGTTTCGTCAGATCCTGAAGAAGATCGTGT CCACCAAGGAATCAATGGGTGACATCATGAAGAACTCTTCTTTTGCCTTAACTGAGGCTAAGTATGTTGCTGGTGATAAC ATCAAGCATGTGGTCCTTGAGAATGTTAAGGAAGCTTCCCTCCGGGTCCGTTCTCGTACGGAGAATGTGGCCGGAGTTAA GCTCCCTAAGTTTGATTATACTGCGGATGGTGATGCATCGAAGAATGATCTCACCGGGTTGGCGAGGGGTGGCCAGCAGG TGCAGCAGTGCCGCGTCGCTTACATCAAGGCGATTGAGGTTCTTGTGGAGCTTGCTTCCCTTCAGACCTCTTTCCTCACC CTTGATGAGGCTATTAAGACCACCAATAGAAGGGTCAATGCTCTTGAGAATGTGGTCAAGCCGCGATTGGAGAACACCAT TAGTTACATCAAGGGGGAACTGGATGAGCTTGAGAGGGAGGATTTCTTCAGGCTGAAGAAGATTCAGGGGTATAAGAGGA GGGAAATTGAGAGGAAGAGGCTGGAGGCGGCTGCAAAGGACAAGCTTGGTGACAAGTTCCCCTTGCACAAAGATGTTTCC TTCAATTCTCAGAACTTGTTGGCTGCAGCGGGTGGCAAAGATGAGGATATCATTTTCTGA

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CDS sequence (LotjaGi3g1v0349900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCGGGGCAAACACAGCGTCTGAATGTGGTGCCCACAGTGACGATGCTTGGAGTGGTGAAAGCGCGTCTGGTCGGAGC CACCAGAGGCCACGCGCTTCTCAAGAAGAAGAGCGACGCTCTCACGGTGCAGTTTCGTCAGATCCTGAAGAAGATCGTGT CCACCAAGGAATCAATGGGTGACATCATGAAGAACTCTTCTTTTGCCTTAACTGAGGCTAAGTATGTTGCTGGTGATAAC ATCAAGCATGTGGTCCTTGAGAATGTTAAGGAAGCTTCCCTCCGGGTCCGTTCTCGTACGGAGAATGTGGCCGGAGTTAA GCTCCCTAAGTTTGATTATACTGCGGATGGTGATGCATCGAAGAATGATCTCACCGGGTTGGCGAGGGGTGGCCAGCAGG TGCAGCAGTGCCGCGTCGCTTACATCAAGGCGATTGAGGTTCTTGTGGAGCTTGCTTCCCTTCAGACCTCTTTCCTCACC CTTGATGAGGCTATTAAGACCACCAATAGAAGGGTCAATGCTCTTGAGAATGTGGTCAAGCCGCGATTGGAGAACACCAT TAGTTACATCAAGGGGGAACTGGATGAGCTTGAGAGGGAGGATTTCTTCAGGCTGAAGAAGATTCAGGGGTATAAGAGGA GGGAAATTGAGAGGAAGAGGCTGGAGGCGGCTGCAAAGGACAAGCTTGGTGACAAGTTCCCCTTGCACAAAGATGTTTCC TTCAATTCTCAGAACTTGTTGGCTGCAGCGGGTGGCAAAGATGAGGATATCATTTTCTGA

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Protein sequence (LotjaGi3g1v0349900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSGQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKNSSFALTEAKYVAGDN IKHVVLENVKEASLRVRSRTENVAGVKLPKFDYTADGDASKNDLTGLARGGQQVQQCRVAYIKAIEVLVELASLQTSFLT LDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKRREIERKRLEAAAKDKLGDKFPLHKDVS FNSQNLLAAAGGKDEDIIF

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11671 View details on PTHR11671 Search for proteins/transripts with this domain View external data on PTHR11671	1	259	259	1.2E-120	IPR002699 Show description in modal box View details on IPR002699 Search for proteins/transripts with this domain View on EBI InterPro Service
TIGRFAM	TIGR00309 View details on TIGR00309 Search for proteins/transripts with this domain View external data on TIGR00309	9	212	204	6.2E-58	IPR002699 Show description in modal box View details on IPR002699 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01813 View details on PF01813 Search for proteins/transripts with this domain View external data on PF01813	18	209	192	9.0E-71	IPR002699 Show description in modal box View details on IPR002699 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	180	200	21	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0042626 View details of GO:0042626 AmiGO InterPro QuickGO	Molecular function	ATPase activity, coupled to transmembrane movement of substances	Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.	Subterm of View details of GO:0015405 View details of GO:0043492

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0349900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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