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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0356300 |
| Transcript ID | LotjaGi3g1v0356300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LURP-one-like protein; TAIR: AT3G15810.1 LURP-one-like protein (DUF567); Swiss-Prot: sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12; TrEMBL-Plants: tr|I3SBZ2|I3SBZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0356300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:73812733..73815495) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAAAGTATAGAAATCAAAATAAAAAACTGAAAAGAGTGATAATGGACGATGTAGATTTATGATACTCCTGATCTTCC TTTACAATACATACAGGTCACACACTCTCATCAATGTTCCTTTCCCATTCAAACGCGAAATCTCTTTACAGCACATGTCA ACACAATAGGGTGCTTCATGTTCCTTCCCTCATTATTCATACACCTAGCTATATAAATACACCTTCCTCTCCACGTTTCC ATTCTCATTCAAATTCTGAACACTAGCTAACTCTGTTTTCTTCTCTTCAAAGCCTTTTATTAAAGAAGAAGAAGAAGAAG AATGACGGAAGAGCTGGTTGTGCAAGATGGGTATGTGTTCACTCAAGAGACCCAACTCACTGTTCTCAAAACCTCTCTGT TCTTCGCCGGTGATGGCTTCACCGTCTACGATTGTAAGGGCCAATTGGTTTTCCGATTCGACTGCTACGGACCCTCCACT CGTGACAAGGACGAGCTAGTTCTCATGGATCCCCAAGGTCATTCTCTTCTCACCCTCCGCCGAAAGGTACTGTTCGACTC ATCTTTCTCGGTCATTTTTGCATTCTCCTCTGTTTCACCGAGTTATGTTTCACTGAGTTAACTCACCGAGTCTACTCGGA GCAGGGCCAGCCCAACACCAAATGAGGCTTAAAACGAATTTTAATTTTGGGGGCCTTGAAACATGTTTGATCTAATATAA AATTTTGTTAATTTTAATTTTGAGAGCCTTTTTTACTTTAATAAAAATAAAATCGGAGGCCTCTTTTACTTAAGAAAAAA CAAAAGAAACTGGAGGCCTAAAGGCTAAAGCCTTTGCTTGGGTGGTTTTATCCTTGAGCCGGCCTTGATTCCGAGAATAA GATCTAAGCTTGTGAACTCAGTTTTGATCATATTTCTCTATATATTTGTATTTTCTTTTGAAGATTATAATTCTATTTGT AACTGATGAGAGGATTGCAATTTTTATTTTATTCAACTTTTTTATCATTGAGTTGAGTGAGTCATTGAGTTAACACAGAA ACCGAGTCTTCATCAACGGTGGGAAGGCTTCAGAGGGGAGAGAACGGACGGTGATAAACCAATGTTCAGCGTGAAGAGAT CTTCAATAATCGGACGGTCACGGACTACCTTGACGGTGGAGGTGTACGATAACCCCGGTGTGGAGTATCTCATCGAAGGG TGTTTCCCGCAGCGTTGTTGCAAGATTTACAACTCCACTCGAAAATTAGTGGCTGAGATTCGTCGCAAGGTGGACCCCAC CACCAGCGTTATGCTTGGGAAGGAAGTGTTCATGCTTTGCGTTCAACCTGGTTTTGATGGGTCCTTCGCCATGGGGTTGG TCCTAGTGCTTGATCAGATCAACGGTGAGAATTTCTTTGATAGTGGAATCACGACGGAGCCTGCTGTGCACCCTGCTACA GAAGATTGAGGACTTGGCTCTTTGGTTTGGTTTGGTTCCTTTTTTGAGTTGAGATTTGTGTTTATTTCAACTTTTTCGGT CACTATCTTCTCACCTTACCTGAATGGCTTAAATAAAAAGGGTTATTGGTGTATATATATTAATACCTTTCAAAAGTCAA ATTATGCTTCATTTAAACAAAATTGTTATTCCCATTTCACTTTTAAGTTGCAAGTATCTTAATTAGATGTTTTATGTCAA GGAAATTGTGAAAGGTGAAGTACCAACTATTTTATAATCAAGTATTCGTGTCTAAATTTTTTAAGCGATACCTGTAGTTT ATGAATGTCTCTCTGATCACTAGAAATCTGCATTTTGAGATACTGAGATAAACTGTGTAGAGTGTTTGCTATTTTTCTTA ATTGAAAATGTGATAGTAAATTAGCAATGTAACATTCTACCATCATAAGATAGGATCATAAGATGTTTTCTCATATATTT CAGGTACGAAAACATTACTCAGTTCGGACTGTTTTCCCTTGGAACTGCCTGAGATGCATACAATATGGTGGTCTCGTTTT AGGGAACAAATATATAATTAATCGAGACAAATCCATGATGATTTTCATCCAAATTATATAATTATTACAACCTTTTAGAG ATATGGAGTTAGTCATCAAGGTAGATGTTGTTGGGTTGACTTGGATCACAATTTCTTTTATGAAAAGGACATTTTTGAAA TATGTTTGTTTATGCATTAGATATCTTTCACTTTTGAATTTAATATTGTAATGTGACTTCTAACTTACCAATTTAATGAA TACAAATTTGAATTGAAAACTCTTCCTTTCTTTTAGTCTAATATATTTTATATTTTAAAACCCTTCCTGAACTAGACAAT TGCAACTAATTTGACTATTAGTTATCTTCTGTTTCATTAGAAAGGAAACCTACCTAGCTAATTCCATAGAGCTAAACTTA TATATCACGTCACCGGCCACCACCGGCCAAAAGGAACTAAACTAATTGCACTTTTTATTTGTGTGTTTGATGTTTCCTCT ACACTATGTTTGGTTTAGGAATAAAAGAGAGAAATAGAAAAAATGAATAGAGAGAAAGAGGAGAGAAAGTGCGTATATTT TATTGGTTGTTTGGTAGAAGAAAAAGAGAAGAGAAAAAGTGATTTGGGTTAAGATTGTGGAGTGAAACAAGTAGGTTAAC TGATCAAGTGTGGTTAATTAAGAGGATAGCCATGTAACATGTTTGATATGAAGTGATTAAACACTGATAAACTAACTAGC AGTACAGTGAACTAGTACAAATGGTTGTTAATGTGTAACATAC
CDS sequence (LotjaGi3g1v0356300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGAAGAGCTGGTTGTGCAAGATGGGTATGTGTTCACTCAAGAGACCCAACTCACTGTTCTCAAAACCTCTCTGTT CTTCGCCGGTGATGGCTTCACCGTCTACGATTGTAAGGGCCAATTGGTTTTCCGATTCGACTGCTACGGACCCTCCACTC GTGACAAGGACGAGCTAGTTCTCATGGATCCCCAAGGTCATTCTCTTCTCACCCTCCGCCGAAAGAAACCGAGTCTTCAT CAACGGTGGGAAGGCTTCAGAGGGGAGAGAACGGACGGTGATAAACCAATGTTCAGCGTGAAGAGATCTTCAATAATCGG ACGGTCACGGACTACCTTGACGGTGGAGGTGTACGATAACCCCGGTGTGGAGTATCTCATCGAAGGGTGTTTCCCGCAGC GTTGTTGCAAGATTTACAACTCCACTCGAAAATTAGTGGCTGAGATTCGTCGCAAGGTGGACCCCACCACCAGCGTTATG CTTGGGAAGGAAGTGTTCATGCTTTGCGTTCAACCTGGTTTTGATGGGTCCTTCGCCATGGGGTTGGTCCTAGTGCTTGA TCAGATCAACGGTGAGAATTTCTTTGATAGTGGAATCACGACGGAGCCTGCTGTGCACCCTGCTACAGAAGATTGA
Protein sequence (LotjaGi3g1v0356300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEELVVQDGYVFTQETQLTVLKTSLFFAGDGFTVYDCKGQLVFRFDCYGPSTRDKDELVLMDPQGHSLLTLRRKKPSLH QRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEVYDNPGVEYLIEGCFPQRCCKIYNSTRKLVAEIRRKVDPTTSVM LGKEVFMLCVQPGFDGSFAMGLVLVLDQINGENFFDSGITTEPAVHPATED
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 202 | 202 | 9.4E-119 | – | |
| PANTHER | 1 | 202 | 202 | 9.4E-119 | ||
| Gene3D | 3 | 194 | 192 | 2.5E-64 | ||
| SUPERFAMILY | 5 | 190 | 186 | 9.15E-50 | ||
| Pfam | 6 | 185 | 180 | 3.3E-57 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0356300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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