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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0360200 |
Transcript ID | LotjaGi3g1v0360200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Phototropic-responsive NPH3 family protein; TAIR: AT1G52770.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q5KS50|NPH3_ORYSJ Coleoptile phototropism protein 1; TrEMBL-Plants: tr|A0A072UH38|A0A072UH38_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi3g1v0360200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:74280813..74284535) extracted from Lotus japonicus Gifu genome v1.2.
GGCATTCTGCAAATGTATATGGGGACAAAGTCCAAATTCCTTACGCAAAACATGAGATGAGATAGAGAATGAACAGAAGG GTCCCCTTCAAGTGCCTTTCAAGTTTTAAGTGCGCCATAATTAATTTTGTTCTCCATTTAAGGCATGTCAGTATGTGACC AGCAAAGTCTGTTGTCTGCTATAGCCTATAGGGAGAGAATAAACACTTATTATATGAGAGGTCCTACTCCTATCTCAGTA ATAGCCTTATCCATCCTCTTCATTCCTAGCTTAGTAAAACCTCATCTCCACAAAAAGAATGTGATATTTTTAACATATAC TCCACAATACAAATATGTCAAAGACAGCTACAACATCTACTCTACTTGAGCTTCTCATGGAAATGAAGAAGCAATCCTAC CCAGAAGTACTCACTTTCCACCCAAAATCACCATCCCAATTCCCCTCTGAATGCTGGTTCGACGACGCATGCATCCTCGA CATGGATTACTTTGTGAAGACCCTCTCCGGCATCAAGGCCAAAGGCGTCCGCGCAGACCTCATCGGCTCCATCATCACGC ACTACGCCTCCAAATGGCTCCCTGACCTCTCTTCCGACGACATGGCCGAAAAGGGTCTCACACAGTTCGAGGAATCGACT GAGAGTGTCACCACTTCATGGATGAAGAAGAGGTTCTTCATGGAAACCTTGGTTGGTGTTCTGCCTCCTGAGAAGGACGC CGTCCCCTGCAACTTCCTCCTCCGCCTCCTCAGAACCGCCAACATGGTTGGCGTTGAGGGCAGTTACAGGCGAGTAATGA TTCATTCACACCAACTTCTTTTCCATCTCATTCCACTAACTTTTTCTTCATATATTTCTCTGCATTTCCTATCACATCGC ATGCATATCATTCATTTCTTTCTTCTCTTCCTATGTCACTTGCTGTGACCTGTGAGGGAAATAAGAGTGTGAATAAGTAT TATTCGTTACAGGCAGGAGCTGGAGAAGCGCATTTCGTGGCAGTTAGACCAGGCTTCGTTGAAGGAGCTTGTGATACCTT CTTTCAGTCACACTTGTGGGACTCTGTTGGATGTTGAATTGGTGATTAGGCTGGTGAAGAGGTTCGTGAGCTTGGATAGT GAAGGGGCTAAGAGCGGTGCTGCTTTGCTTAAAGTGGCGAAGTTGGTTGATTCGTATCTTGCTGAAGCTGCTATGGATGC CAATTTGAGCTTGTCTGAGTTTGTTACTCTTGCGGGTGCTCTTCCAAGTCATGCAAGAGCAATAGATGATGGATTGTACA GAGCCATTGACACTTATCTAAAAGTATGTATGTCTTTTTTTTATCTTGGAATTAGTTTCAAATTGGTTACTAGAGTTAAA CTTTTTTTAGCTCAGGCCTTCTGTTAGGAAATCGTAATAGAGAAATAAAAACGGTGACACAATCACAACACAAGGATTTA ACGTGGAAACTCCAAAACCGGAGAAAAACCACGACCGTTGTTAAAACCGACAACCAGAGAATAAACACTATGTGAAAATT GTTACAACACATAGACTCTTTCTCTCAACCACCCCTCAATCTCCTAGTACACTCAACACTCTCCAAAGCTATTATCTGAA TAACATATCACAACACTCTAAAACAAGAGTATAGGAAAAACAACAGATAAAAGCTTAAAGCTTGAGAAACTACATCTTGC TGGATTTGCTCTCTACCATGGGACACAATTGCTGGGATTGATAATTTCCTACAGGTTGCTATGACATTTATAGGAGCTGA TGCCAAGCCAATGCATATGCATTATGTGTGTATGCATACCATCATTTTCAACAAGTGCTGCACCGTCCTTTTTTACCCAT GCCAATTTTCTTGACTTTCAATTCTGCAAGTGGCATGGTGATATTGACTTACACCTTCAGGGTTCTATATACACTAACTC AATTGATGATGAGAGAAACAAACAGTGGACTGCATGTGAATCAATAGGCTCATTTGGATATATGGAGAATTTTCCTGTGT TGTCACTTGTCACCAGCATGAGAATATTCTTCTGAAAAGAGAGTTATGTTTGGAAAATTATAGACACCCAAACATAACTG ATATATGATAGTCATGTGGGTAGACAAGTGATAAGTAATAGATGTGATATGTAATATAATGTGATAAAAAGTGAAAAATA GATGAAAAAATGTGGTGTATGTAAAATGTTTGTACTGTTTAGTGTCTACGTATTATAAGTACCGCCTATGATTTGTATAA AGAAATGTGATTTGGAAAACTTTTTCATGTCCAACTCATAGATAATGTTATGATAAATAATAATAAATTTTAAAATTAAC ATTTTAGTGATTAAGAATGAGAGGGATCCAGATTCATTATCCTTTCATCCAGTGATATTATGTCTTGTTAATTAGAAGTC ATGACATATGATATTCATAATCTTATATGAGTTATTTTTAATTGACATGATACGATCTAAAATTATTAGGTGTCAGATTA TCTTAAATTATCTTTATGTGCATGATAGAACTACCATGACATAACAGGCAAAAAAAAAATAGAGGAATGTATGGAAATGC GATTAAGCACTAAAGTAGTATGTTAATTTGGGCATGTTGAAAATTTAACTCTGGCTTTGTAGGCACATCCAAGTGTGTCA AAGCAAGAAAGGAAGGGTCTGTGCAGGCTTATTGATTGCCGGAAACTGACACAAGAGGCTTCACTTCACGCAGCTCAAAA CGAACGCTTCCCTGTGAGGGCGGTGATTCAGGTTCTCCTCTCCGAGCAAACCAAACTGAACCGCCACACGGAGTGGAGCG GCTCCATCATGAGTGGCGGCCCGAGCCCAAATGGTGGCGGCTGGTTTGACACGGCGCGGTGCCTGTCGAAGCGCGAGATA AACGCTCAGCATGTGGAGATAAGGAAGCTGAAGGAGGACGTGCAGAGGCTGCAAGGGCAGTGCAGCGCCATGCAGGTGCA GATGGAGAAGATGGTGGAGAAGAAGAAAGGTTTCTTCAAGTGGAAGAAGTTCCCATTCAGCAAAGGGGAGAGTGCAGTGT TGGAGAAAACGGAACAAGATGGAGTTGAGTTTGAAAGGCAAACACCTGGTGCTGCCACTAATGTGGACATGAAAACCAGG TTAGTGACTGTCAAAGGGAAGACTCCTCAGAAGTGGAGGAAATCCATGTCCTGAAACAGCAGCAACAACAACTGATGAAA TCAAGATTACATAGGTAGTTCACCTAGTTTCCTTGTTTGTGTTTGTTATATTGAGCAAATTATAAGTGTGAGGAATAAGA AATAAAATAACAATATTAATCAATTTTGTCTTCAATCTCATTTTTACCTATTATTTTTATTCATGTAGGTTTGATTTGAC GTTGATTTAAACACAAATGTGATTTCACTTATCTCAAATATCAACAGAGAAATCATAATTTGTCATGTTAAGATTTTTGT GGATAAGAGAAGCCCCACTTTGTCATGTCCAATTAATGTGGGCCTCTCGTTGAGTTCAACTGAAATTAAAACAATCACAT TTCTTATTTTCTCTCTCTTCTCTTCACCTCCTCTCCAATGGAGTGTGAAAACCTAATCCAACTTTTTTCCCTATCATTTT CTTATCTAATTTATCAAACTTCTCCTTTTATCTTCTCTCTCCTCATCTAAAATGAGAAAGCAAGACACAAGAAGGGGTAA TTCCCGGTGGAGGAGAGGTCTTGCCTATAGAGGATAGAAGAAC
CDS sequence (LotjaGi3g1v0360200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAAGACAGCTACAACATCTACTCTACTTGAGCTTCTCATGGAAATGAAGAAGCAATCCTACCCAGAAGTACTCAC TTTCCACCCAAAATCACCATCCCAATTCCCCTCTGAATGCTGGTTCGACGACGCATGCATCCTCGACATGGATTACTTTG TGAAGACCCTCTCCGGCATCAAGGCCAAAGGCGTCCGCGCAGACCTCATCGGCTCCATCATCACGCACTACGCCTCCAAA TGGCTCCCTGACCTCTCTTCCGACGACATGGCCGAAAAGGGTCTCACACAGTTCGAGGAATCGACTGAGAGTGTCACCAC TTCATGGATGAAGAAGAGGTTCTTCATGGAAACCTTGGTTGGTGTTCTGCCTCCTGAGAAGGACGCCGTCCCCTGCAACT TCCTCCTCCGCCTCCTCAGAACCGCCAACATGGTTGGCGTTGAGGGCAGTTACAGGCGAGAGCTGGAGAAGCGCATTTCG TGGCAGTTAGACCAGGCTTCGTTGAAGGAGCTTGTGATACCTTCTTTCAGTCACACTTGTGGGACTCTGTTGGATGTTGA ATTGGTGATTAGGCTGGTGAAGAGGTTCGTGAGCTTGGATAGTGAAGGGGCTAAGAGCGGTGCTGCTTTGCTTAAAGTGG CGAAGTTGGTTGATTCGTATCTTGCTGAAGCTGCTATGGATGCCAATTTGAGCTTGTCTGAGTTTGTTACTCTTGCGGGT GCTCTTCCAAGTCATGCAAGAGCAATAGATGATGGATTGTACAGAGCCATTGACACTTATCTAAAAGCACATCCAAGTGT GTCAAAGCAAGAAAGGAAGGGTCTGTGCAGGCTTATTGATTGCCGGAAACTGACACAAGAGGCTTCACTTCACGCAGCTC AAAACGAACGCTTCCCTGTGAGGGCGGTGATTCAGGTTCTCCTCTCCGAGCAAACCAAACTGAACCGCCACACGGAGTGG AGCGGCTCCATCATGAGTGGCGGCCCGAGCCCAAATGGTGGCGGCTGGTTTGACACGGCGCGGTGCCTGTCGAAGCGCGA GATAAACGCTCAGCATGTGGAGATAAGGAAGCTGAAGGAGGACGTGCAGAGGCTGCAAGGGCAGTGCAGCGCCATGCAGG TGCAGATGGAGAAGATGGTGGAGAAGAAGAAAGGTTTCTTCAAGTGGAAGAAGTTCCCATTCAGCAAAGGGGAGAGTGCA GTGTTGGAGAAAACGGAACAAGATGGAGTTGAGTTTGAAAGGCAAACACCTGGTGCTGCCACTAATGTGGACATGAAAAC CAGGTTAGTGACTGTCAAAGGGAAGACTCCTCAGAAGTGGAGGAAATCCATGTCCTGA
Protein sequence (LotjaGi3g1v0360200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSKTATTSTLLELLMEMKKQSYPEVLTFHPKSPSQFPSECWFDDACILDMDYFVKTLSGIKAKGVRADLIGSIITHYASK WLPDLSSDDMAEKGLTQFEESTESVTTSWMKKRFFMETLVGVLPPEKDAVPCNFLLRLLRTANMVGVEGSYRRELEKRIS WQLDQASLKELVIPSFSHTCGTLLDVELVIRLVKRFVSLDSEGAKSGAALLKVAKLVDSYLAEAAMDANLSLSEFVTLAG ALPSHARAIDDGLYRAIDTYLKAHPSVSKQERKGLCRLIDCRKLTQEASLHAAQNERFPVRAVIQVLLSEQTKLNRHTEW SGSIMSGGPSPNGGGWFDTARCLSKREINAQHVEIRKLKEDVQRLQGQCSAMQVQMEKMVEKKKGFFKWKKFPFSKGESA VLEKTEQDGVEFERQTPGAATNVDMKTRLVTVKGKTPQKWRKSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 37 | 445 | 409 | 1.3E-197 | – | |
PANTHER | 37 | 445 | 409 | 1.3E-197 | ||
ProSiteProfiles | 39 | 313 | 275 | 87.043 | ||
Pfam | 40 | 289 | 250 | 1.2E-87 | ||
Coils | 348 | 382 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0360200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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