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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0369700 |
Transcript ID | LotjaGi3g1v0369700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT1G52140.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|O74834|UNG_SCHPO Uracil-DNA glycosylase; TrEMBL-Plants: tr|G7II06|G7II06_MEDTR Avr9/Cf-9 rapidly elicited protein; Found in the gene: LotjaGi3g1v0369700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:75622802..75623797) extracted from Lotus japonicus Gifu genome v1.2.
GCCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAATTCCAAGCAAATTACATATAAAACAGCTTATAGA AATGGAAAACAATACACAAGTACTAGCTAAGAGAGTGTGGAGCATGATACGTGTGGCATTCTACATGTTGAGGAAAGGCG TCACAAAGGGAAAGCTCATGATGGACCTCAACACCATGCTCAAACGCCGCCGCAAGCTCGCCGGCAAAGCCATCACCAAC CTCATGTTCCACCACCACAACCACGCCAACTCGGTCTCAAGCCGACAATTCACCGCTGCCAGGGAGTACGAGTTCAGCTG CAGCAACACCCCCAACAACTTCTTCACCCTCGGCCACAGCAACAAGCGCCACCGCCACAACAACTTCTTCACGCGCTCTC ACGCGCAGCCCACACTTGACGACGACGCCGTGACTGCTAATGCAGTTAAGGCCGTGCTGGAGATGCTGAACAATGAGGCC GTGGCCGAGGCGATGTCTCCGGCATTACCCGGGTTCGGGCGGAGCCCTATGGTGAGGCAGCTGAGGGTGACTGACTCGCC GTTCCCACTGCAAGACAGTGAGATTGTGGGAGAAAAAGATAGCCAGGTGGACAAGGCAGCTGATGAGTTTATAAAGAGGT TCTACATGGAGTTGAGGCAGCAAGATTGAGCAGCATTGTTCAGTTTCTTTCTTTCTTGAGACAAGTTAACAATTTCAATT TTGATTATTTGTTAATTAAAGCAATTGTTTTGAGCAGTTTTGTAGTATGTTCTTGTTCAGTTCAGTTGCTGCTTAATATA TATGGACAATAAAAGAGAAGTTAAGGAGCATGATTAACTCTCAAGGCTGTGTATTTTCAAATTTTATGTTGCTTATTAAT TATCTGTTTCCAAATTTTTTGTCAAAAGTTTGTTCATCTATATCTATACCTCTTTCTGATTTGAAGCTTTGAAAATGTTT GAGAATGATAGCTCAAGTAGAAAGAGCTGAATGATA
CDS sequence (LotjaGi3g1v0369700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACAATACACAAGTACTAGCTAAGAGAGTGTGGAGCATGATACGTGTGGCATTCTACATGTTGAGGAAAGGCGT CACAAAGGGAAAGCTCATGATGGACCTCAACACCATGCTCAAACGCCGCCGCAAGCTCGCCGGCAAAGCCATCACCAACC TCATGTTCCACCACCACAACCACGCCAACTCGGTCTCAAGCCGACAATTCACCGCTGCCAGGGAGTACGAGTTCAGCTGC AGCAACACCCCCAACAACTTCTTCACCCTCGGCCACAGCAACAAGCGCCACCGCCACAACAACTTCTTCACGCGCTCTCA CGCGCAGCCCACACTTGACGACGACGCCGTGACTGCTAATGCAGTTAAGGCCGTGCTGGAGATGCTGAACAATGAGGCCG TGGCCGAGGCGATGTCTCCGGCATTACCCGGGTTCGGGCGGAGCCCTATGGTGAGGCAGCTGAGGGTGACTGACTCGCCG TTCCCACTGCAAGACAGTGAGATTGTGGGAGAAAAAGATAGCCAGGTGGACAAGGCAGCTGATGAGTTTATAAAGAGGTT CTACATGGAGTTGAGGCAGCAAGATTGA
Protein sequence (LotjaGi3g1v0369700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENNTQVLAKRVWSMIRVAFYMLRKGVTKGKLMMDLNTMLKRRRKLAGKAITNLMFHHHNHANSVSSRQFTAAREYEFSC SNTPNNFFTLGHSNKRHRHNNFFTRSHAQPTLDDDAVTANAVKAVLEMLNNEAVAEAMSPALPGFGRSPMVRQLRVTDSP FPLQDSEIVGEKDSQVDKAADEFIKRFYMELRQQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 4 | 194 | 191 | 9.2E-79 | – | |
PANTHER | 4 | 194 | 191 | 9.2E-79 | – | |
Pfam | 174 | 194 | 21 | 6.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0369700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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