Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi3g1v0372900
Transcript ID	LotjaGi3g1v0372900.1
Related isoforms 3	LotjaGi3g1v0372900.2 LotjaGi3g1v0372900.3 LotjaGi3g1v0372900.4
Lotus japonicus genome version	Gifu v1.2
Description	Inositol oxygenase; TAIR: AT1G14520.2 myo-inositol oxygenase 1; Swiss-Prot: sp\|Q8L799\|MIOX1_ARATH Inositol oxygenase 1; TrEMBL-Plants: tr\|I3S3Z3\|I3S3Z3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:76420837..76425539) extracted from Lotus japonicus Gifu genome v1.2.

ATAATGTGGTAGTGCCCTATCAAATTAGAGGTGTACAGGACTTAACCTGATCCATTAACTCGTCATAACTCGAGTTCATT TAACCTGAATCAATCAGGTTTTATAAGTCTAGCGACGAGTTTAGTAAAAGTTAATTCAGTCAATAATATTTTACATTGGG TGAAAAATAAGTGCAACTCGCAGTCATATTTGAGATTATCAATTTGACAAGTTGGGTGGGTGGCCTTTGGCCTTGTCTCT AATATTTTTAAAGTTAAACGGGTTACCGCCTTTTCATATGATAAAAAATAGTAGATATTTAGATGATAAGGGAAGAATAA GGTTTTGATAATCATAATCATGTGTTGTGCCAAAGATGGAAAGAAAGAGAAGGAAAGGTTGGATTTTCAGGGAAGGACTT ATGAAGTCCCAATTCTCAGGGAAGGACTCTCCGGCCAGCTATAAATACTCCCATTCCAACGGCAACAATGCTCACCAAAC CCCAATTTCCTCCTCTTTTTCCTGCTTCCCTCACTTCTCTTTCTTTCTTAGTTTTCCTCTCTAACTCTCAGATTCAGAGT TATCACCATGACTATCATCATTGACCAACCTGATCACTTTGGTAATTTTTATAGCCCTTAGCTATTTTTTTATAGCAAAA TTTATGATTTTTTCTCTCCTCTAGTACTTTTTGTAATTTTTCTTTATTTTTAGCAATTTTTTTTTTCTCTCACAGAACAA AAAAATCTGAACTGTAGTACAAATTTTTTTTGGGCTTAATTTTTTATCGTCCATCTAATTGAAAAAGAGAAAAATCAACA AGGTTTTATTTATCTTGGTAATTTTTAATTAGTTTTTTTTGCTACAAGGTTTTTTATTTGTTGATGATAAAATTGCTAGA TCTGTTATTTTTAATGAATTATGTGCAATTTTCCTCTGATACAGTAAATGGTCTGGTTTTTTTTTTCTTTCTCTTTTGCT GGATTGATTTGGACATGTGAAGTGTGCACAAAAATTTGTACGTTTTTTATTTCAGATAATAATTTTTTTGTTTTAATTTG CAGGGTCTGATGTAGAGGGAAAGACGGTACCAATAGATGAGAAGGAACTGGTGTTGGACGGTGGATTTGTGATGCCACAT ACCAACTCATTTGGGCACACTTTTAGGTTCACATCTTTCATTAATCTGTTCAGTGTTCACTGTTTGTGCCTTTGTTTGTG TGTGCTATGCTTTTTTGCTTATAGATTCAACGTTTTGTTCCTTAATTAAGTGATTAGGGATTTGAATCTTAAGATTTGTG AATGAATAAAAACTCATTGAGCAACTGTTAGCACACTGATCGTAGAATGAGAGACTAGTCTAACTAATTTGAGTTTTATC GCTAAAGAATGTTTTTAGATGGGAAAAACTAGAGAGATTTGTGTGCTGCAAGTGTCACTGACCACTTATTTTTTTTTAGT CTTTTTTTTTTGCTTTAAAAAAAGTCTTTTTTTGTTTTTTAATTTCTTTTTCCTGGTTTGGGCCCATTAGTTTTAAAATC TTAGACGGTGCCAATGTGGCTCAACATAAAAAAAGTGTCAATGCGGTCCAGTTATTCTTGCCCCTTCTTTAATCTTTGGG CTAGGCCCATCAAGTACTCCCCCTTTAAAAATATAGTGAAAAATTATTTTTTGGTAAAAAAATTTAAATTACATTTATGA TGAAGAAAAACGAAATTTTGAAAAATTTGTATCCAATTTTAGGACTTAAATAATCATATTTTGTTCATTCCCAAGTTAAA ATAACACTGTTAGAATTATCTTACAAGTGAAAGTCATTGCAAATCAGGGATTACAATGCTGAAAGTGAGAGGCAAGAAGG AGTGGAGAACTTCTACAGGAAAAATCACATTTATCAATCCGTTGATTTCGTAAGTATCTATCTACTATAAAATCTTGTTT TTCAATTTGTTACACAATAAGATTTGGTATTCATTAATTAATATGAACTTACATTGTATCTTATAATAATACAGGTGAAG AAAATGAGAGAGGAATATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCTTCTTAATGAAGTGGT GGATGAGAGTGACCCTGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTATAAGGAAGGACTACC CAAATGAAGATTGGCTTCATTTAACTGGCCTTATCCATGGTACTTCCTACTTTCTAATCATCCCTTTACACATTGCGGTT GCCGTTTCGTCGTGGAATTGCAGACAAATGAAGGATGATGTGCCTGCAATTGTGGTTGTGATGCCAATGTGGGAACTGTA AAATCCATTGCATTATGGCCCCCATTGCAGTTGCCTACCATAATTTGAAACCCTTTATAAGTCCAGTACCTAAAAGATAC ATTTTTAGTTTTGATTTAATTAGGACAACATGGAAGTGGAACCATAGAATTGGTAGACAGGAAATTAACTAAACTGTACT TAATTATAGCATTTAACCAATTTGATTCATTGCAGACCTTGGCAAGGTGCTTCTGCTCCCCGTTTTTGGAGGACTTCCTC AATGGGCTGTAGTAGGTAAGAATCATTTTCGTGTATGTTTGAAAATCCTTCTACAATTGATTATGAAACCAAAATCAATT CTGGGCAGCTTATGGATTTCAATATTACTTGTTGAAGTTACAGTCTTCTAATATTCACTATATGCATACAGGTGACACAT TCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAGGTAATCTATCTATCAATTCATTTTCTTTATTTGTGG AGAACAAACAAATTATTGAGATTAAACACCTGATATATATTGTATTTCCACTTCAGCATTTTAAGGAGAACCCAGACTAC AACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAACAACGTGCTGATGTCATGGGGACA TGATGACTACATGTATCTTGTAAGAACCTGAAAACCCCATGTGATTATAAGTCTGTTTGGATACATGGTGGAAAATCACA GTTGAGCCAAAATCGTGGTGGACAGATTTGTGACTGTCGACCATGATTTTGGCCTTACCGAGATTTTCCAATATATCCAA ACAATTCAATGCAATTATTTCATAAACAGTGAGGAAAAGGTCTAAAGTATATACTCTCTGTCTTCAGGTGGCAAAGGAGA ATAAGACTACTCTGCCTTCAGCTGCTCTGTTCATTATCAGATACCATTCATTCTATGGTAAGTCTAACTTAAAGAAGTAA TTAATGTTCCCATGTTAATCATTTAATCATAAGCCTATAACATATCAAATGGTCCATTTTGCAATTTGTTTGATATCATC ATTTGTTTTGCAGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGATTTTGAGAATCTGGAATGGCT CCACATTTTCAAGTAACACCATTACATGATCTTCATATTTAGCAATTAAGTTTGCAAAATTTTGTTAAATTTTTTTCTAA CTTCCTTCTACATTCACTCACTTGCAGCAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAAAAGGTCA AGCCATACTATCTCTCTCTCATTGAAAAGGTAAGCACTGCTAGAAAAATTTGTATTTCCTCTCCTTCTGAAAAAGAAATA AAAAAGTTGTTGTCTTTACCTAGTTAATTTTGAGCTTGTACTAATTAATGTATTTTTCTTTTCTGCAGTACTTTCCTGCA AAGCTAAAGTGGTGAGGTGTTGGAGCCTTGAAGTTGCAATAATGTAGCATGATAATTAGTTTAGTATGGAGTAGAGGGAC TAGGATTTTCCTTTTTGAGAATCAGTAGAGGGAATAAGCCATTAAGCTGAAGTAGCATGGATTTCTAAGCTTTGTTGGTT GAAGATTCATGTATGAATAAATATTTATGGTCAAATTCCCATGTGAAATACTGTCCACTCATGTTTCATTATAATGCCTA GACAAATAGTTTGAACAAACAGAACAGCAAAAACAAACATATAGAGAAGAGAACTACCCTTTCTCCATCAGAGGAAGTAC ATTACAATTTACAAGTTTCAAAAAACTCCTTTTCCCTCAAACCCTGCTTAGCTAAAGCATTTGTAACTCTATTCAACTTC ATCGGAACATGTTGAAACACTACCTCCCAATCCTGGTGAATCAAACAACAGATTTCCGCTAAAAGACCAGGCTTGCACGA TTCAGAAGTTAATTTTATCAAGGCTATCCGTCTCGCGGATGGATTACTTTATGCACACTAAGCTTCCAAGCTAAAGAAAG CCCCCTTATCACTTATAACATATCAGCTAATGACACTTCTTCCACCCTTTCAAGCTCGAAAAACCTGACAACCCTACCAC ATGGCTGATATAAAAAGAGGCATATTGATCTGCAAATAGAAGATGGCATTACACTTACTTCATGCTTGACAGTGATTAAG GAGAACCACTTAACTAAAAAGAAACAGGAAGCATTATTTGCTTTATTCTTAATTCTCATCTTTATAAAATGTGTTTTCAC CTTAATAAGGGTACCCCTTGACATGTAAATGTAATATCTAACAGTAAATGGTTCAGCTAAAGCATCTTTAAGGTGAATAA TTGATTCTTAAGAAGATTAAAGTTATTGTTAATGTGACTAATTTTTTCTTAAAAATATTAAAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0372900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTATCATCATTGACCAACCTGATCACTTTGGGTCTGATGTAGAGGGAAAGACGGTACCAATAGATGAGAAGGAACT GGTGTTGGACGGTGGATTTGTGATGCCACATACCAACTCATTTGGGCACACTTTTAGGGATTACAATGCTGAAAGTGAGA GGCAAGAAGGAGTGGAGAACTTCTACAGGAAAAATCACATTTATCAATCCGTTGATTTCGTGAAGAAAATGAGAGAGGAA TATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCTTCTTAATGAAGTGGTGGATGAGAGTGACCC TGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTATAAGGAAGGACTACCCAAATGAAGATTGGC TTCATTTAACTGGCCTTATCCATGACCTTGGCAAGGTGCTTCTGCTCCCCGTTTTTGGAGGACTTCCTCAATGGGCTGTA GTAGGTGACACATTCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAGCATTTTAAGGAGAACCCAGACTA CAACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAACAACGTGCTGATGTCATGGGGAC ATGATGACTACATGTATCTTGTGGCAAAGGAGAATAAGACTACTCTGCCTTCAGCTGCTCTGTTCATTATCAGATACCAT TCATTCTATGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGATTTTGAGAATCTGGAATGGCTCCA CATTTTCAACAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAAAAGGTCAAGCCATACTATCTCTCTC TCATTGAAAAGTACTTTCCTGCAAAGCTAAAGTGGTGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0372900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTIIIDQPDHFGSDVEGKTVPIDEKELVLDGGFVMPHTNSFGHTFRDYNAESERQEGVENFYRKNHIYQSVDFVKKMREE YGKLNRVEMSMWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPVFGGLPQWAV VGDTFPVGCRFDESIVHHKHFKENPDYNNPAYNTRYGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYH SFYALHREGAYKHLMNEEDFENLEWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR12588:SF3 View details on PTHR12588:SF3 Search for proteins/transripts with this domain View external data on PTHR12588:SF3	1	305	305	3.2E-188	–
PANTHER	PTHR12588 View details on PTHR12588 Search for proteins/transripts with this domain View external data on PTHR12588	1	305	305	3.2E-188	IPR007828 Show description in modal box View details on IPR007828 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF109604 View details on SSF109604 Search for proteins/transripts with this domain View external data on SSF109604	48	305	258	1.44E-117	–
Pfam	PF05153 View details on PF05153 Search for proteins/transripts with this domain View external data on PF05153	56	305	250	8.7E-126	IPR007828 Show description in modal box View details on IPR007828 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005506 View details of GO:0005506 AmiGO InterPro QuickGO	Molecular function	Iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.	Subterm of View details of GO:0046914
GO:0005737 View details of GO:0005737 AmiGO InterPro QuickGO	Cellular component	Cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	Subterm of View details of GO:0044424
GO:0019310 View details of GO:0019310 AmiGO InterPro QuickGO	Biological process	Inositol catabolic process	The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.	Subterm of View details of GO:0006020 View details of GO:0044275 View details of GO:0046174
GO:0050113 View details of GO:0050113 AmiGO InterPro QuickGO	Molecular function	Inositol oxygenase activity	Catalysis of the reaction: myo-inositol + O(2) = D-glucuronate + H(2)O + H(+).	Subterm of View details of GO:0016701
GO:0055114 View details of GO:0055114 AmiGO InterPro QuickGO	Biological process	Oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.	Subterm of View details of GO:0008152

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0372900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi3g1v0372900.1