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LotjaGi3g1v0372900.3

Overview

Field Value
Gene ID LotjaGi3g1v0372900
Transcript ID LotjaGi3g1v0372900.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Inositol oxygenase; TAIR: AT1G14520.1 myo-inositol oxygenase 1; Swiss-Prot: sp|Q8L799|MIOX1_ARATH Inositol oxygenase 1; TrEMBL-Plants: tr|I3S3Z3|I3S3Z3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:76421765..76424022) extracted from Lotus japonicus Gifu genome v1.2.

ATCTTAGACGGTGCCAATGTGGCTCAACATAAAAAAAGTGTCAATGCGGTCCAGTTATTCTTGCCCCTTCTTTAATCTTT GGGCTAGGCCCATCAAGTACTCCCCCTTTAAAAATATAGTGAAAAATTATTTTTTGGTAAAAAAATTTAAATTACATTTA TGATGAAGAAAAACGAAATTTTGAAAAATTTGTATCCAATTTTAGGACTTAAATAATCATATTTTGTTCATTCCCAAGTT AAAATAACACTGTTAGAATTATCTTACAAGTGAAAGTCATTGCAAATCAGGGATTACAATGCTGAAAGTGAGAGGCAAGA AGGAGTGGAGAACTTCTACAGGAAAAATCACATTTATCAATCCGTTGATTTCGTAAGTATCTATCTACTATAAAATCTTG TTTTTCAATTTGTTACACAATAAGATTTGGTATTCATTAATTAATATGAACTTACATTGTATCTTATAATAATACAGGTG AAGAAAATGAGAGAGGAATATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCTTCTTAATGAAGT GGTGGATGAGAGTGACCCTGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTATAAGGAAGGACT ACCCAAATGAAGATTGGCTTCATTTAACTGGCCTTATCCATGGTACTTCCTACTTTCTAATCATCCCTTTACACATTGCG GTTGCCGTTTCGTCGTGGAATTGCAGACAAATGAAGGATGATGTGCCTGCAATTGTGGTTGTGATGCCAATGTGGGAACT GTAAAATCCATTGCATTATGGCCCCCATTGCAGTTGCCTACCATAATTTGAAACCCTTTATAAGTCCAGTACCTAAAAGA TACATTTTTAGTTTTGATTTAATTAGGACAACATGGAAGTGGAACCATAGAATTGGTAGACAGGAAATTAACTAAACTGT ACTTAATTATAGCATTTAACCAATTTGATTCATTGCAGACCTTGGCAAGGTGCTTCTGCTCCCCGTTTTTGGAGGACTTC CTCAATGGGCTGTAGTAGGTAAGAATCATTTTCGTGTATGTTTGAAAATCCTTCTACAATTGATTATGAAACCAAAATCA ATTCTGGGCAGCTTATGGATTTCAATATTACTTGTTGAAGTTACAGTCTTCTAATATTCACTATATGCATACAGGTGACA CATTCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAGGTAATCTATCTATCAATTCATTTTCTTTATTTG TGGAGAACAAACAAATTATTGAGATTAAACACCTGATATATATTGTATTTCCACTTCAGCATTTTAAGGAGAACCCAGAC TACAACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAACAACGTGCTGATGTCATGGGG ACATGATGACTACATGTATCTTGTAAGAACCTGAAAACCCCATGTGATTATAAGTCTGTTTGGATACATGGTGGAAAATC ACAGTTGAGCCAAAATCGTGGTGGACAGATTTGTGACTGTCGACCATGATTTTGGCCTTACCGAGATTTTCCAATATATC CAAACAATTCAATGCAATTATTTCATAAACAGTGAGGAAAAGGTCTAAAGTATATACTCTCTGTCTTCAGGTGGCAAAGG AGAATAAGACTACTCTGCCTTCAGCTGCTCTGTTCATTATCAGATACCATTCATTCTATGGTAAGTCTAACTTAAAGAAG TAATTAATGTTCCCATGTTAATCATTTAATCATAAGCCTATAACATATCAAATGGTCCATTTTGCAATTTGTTTGATATC ATCATTTGTTTTGCAGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGATTTTGAGAATCTGGAATG GCTCCACATTTTCAAGTAACACCATTACATGATCTTCATATTTAGCAATTAAGTTTGCAAAATTTTGTTAAATTTTTTTC TAACTTCCTTCTACATTCACTCACTTGCAGCAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAAAAGG TCAAGCCATACTATCTCTCTCTCATTGAAAAGGTAAGCACTGCTAGAAAAATTTGTATTTCCTCTCCTTCTGAAAAAGAA ATAAAAAAGTTGTTGTCTTTACCTAGTTAATTTTGAGCTTGTACTAATTAATGTATTTTTCTTTTCTGCAGTACTTTCCT GCAAAGCTAAAGTGGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0372900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAGAGGAATATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCTTCTTAATGAAGTGGTGGA TGAGAGTGACCCTGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTATAAGGAAGGACTACCCAA ATGAAGATTGGCTTCATTTAACTGGCCTTATCCATGACCTTGGCAAGGTGCTTCTGCTCCCCGTTTTTGGAGGACTTCCT CAATGGGCTGTAGTAGGTGACACATTCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAGCATTTTAAGGA GAACCCAGACTACAACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAACAACGTGCTGA TGTCATGGGGACATGATGACTACATGTATCTTGTGGCAAAGGAGAATAAGACTACTCTGCCTTCAGCTGCTCTGTTCATT ATCAGATACCATTCATTCTATGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGATTTTGAGAATCT GGAATGGCTCCACATTTTCAACAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAAAAGGTCAAGCCAT ACTATCTCTCTCTCATTGAAAAGTACTTTCCTGCAAAGCTAAAGTGGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0372900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MREEYGKLNRVEMSMWECCELLNEVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPVFGGLP QWAVVGDTFPVGCRFDESIVHHKHFKENPDYNNPAYNTRYGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFI IRYHSFYALHREGAYKHLMNEEDFENLEWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12588:SF3
1 229 229 1.7E-151 –
Pfam
PF05153
1 229 229 1.1E-117
IPR007828
PANTHER
PTHR12588
1 229 229 1.7E-151
IPR007828
SUPERFAMILY
SSF109604
2 229 228 1.76E-109 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0005737
Cellular component Cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Subterm of
GO:0019310
Biological process Inositol catabolic process The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
Subterm of
GO:0050113
Molecular function Inositol oxygenase activity Catalysis of the reaction: myo-inositol + O(2) = D-glucuronate + H(2)O + H(+).
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0372900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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