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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0372900 |
Transcript ID | LotjaGi3g1v0372900.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Inositol oxygenase; TAIR: AT1G14520.1 myo-inositol oxygenase 1; Swiss-Prot: sp|Q8L799|MIOX1_ARATH Inositol oxygenase 1; TrEMBL-Plants: tr|I3S3Z3|I3S3Z3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0372900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76421765..76424034) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGTTTTAAAATCTTAGACGGTGCCAATGTGGCTCAACATAAAAAAAGTGTCAATGCGGTCCAGTTATTCTTGCCCCT TCTTTAATCTTTGGGCTAGGCCCATCAAGTACTCCCCCTTTAAAAATATAGTGAAAAATTATTTTTTGGTAAAAAAATTT AAATTACATTTATGATGAAGAAAAACGAAATTTTGAAAAATTTGTATCCAATTTTAGGACTTAAATAATCATATTTTGTT CATTCCCAAGTTAAAATAACACTGTTAGAATTATCTTACAAGTGAAAGTCATTGCAAATCAGGGATTACAATGCTGAAAG TGAGAGGCAAGAAGGAGTGGAGAACTTCTACAGGAAAAATCACATTTATCAATCCGTTGATTTCGTAAGTATCTATCTAC TATAAAATCTTGTTTTTCAATTTGTTACACAATAAGATTTGGTATTCATTAATTAATATGAACTTACATTGTATCTTATA ATAATACAGGTGAAGAAAATGAGAGAGGAATATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCT TCTTAATGAAGTGGTGGATGAGAGTGACCCTGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTA TAAGGAAGGACTACCCAAATGAAGATTGGCTTCATTTAACTGGCCTTATCCATGGTACTTCCTACTTTCTAATCATCCCT TTACACATTGCGGTTGCCGTTTCGTCGTGGAATTGCAGACAAATGAAGGATGATGTGCCTGCAATTGTGGTTGTGATGCC AATGTGGGAACTGTAAAATCCATTGCATTATGGCCCCCATTGCAGTTGCCTACCATAATTTGAAACCCTTTATAAGTCCA GTACCTAAAAGATACATTTTTAGTTTTGATTTAATTAGGACAACATGGAAGTGGAACCATAGAATTGGTAGACAGGAAAT TAACTAAACTGTACTTAATTATAGCATTTAACCAATTTGATTCATTGCAGACCTTGGCAAGGTGCTTCTGCTCCCCGTTT TTGGAGGACTTCCTCAATGGGCTGTAGTAGGTAAGAATCATTTTCGTGTATGTTTGAAAATCCTTCTACAATTGATTATG AAACCAAAATCAATTCTGGGCAGCTTATGGATTTCAATATTACTTGTTGAAGTTACAGTCTTCTAATATTCACTATATGC ATACAGGTGACACATTCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAGGTAATCTATCTATCAATTCAT TTTCTTTATTTGTGGAGAACAAACAAATTATTGAGATTAAACACCTGATATATATTGTATTTCCACTTCAGCATTTTAAG GAGAACCCAGACTACAACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAACAACGTGCT GATGTCATGGGGACATGATGACTACATGTATCTTGTAAGAACCTGAAAACCCCATGTGATTATAAGTCTGTTTGGATACA TGGTGGAAAATCACAGTTGAGCCAAAATCGTGGTGGACAGATTTGTGACTGTCGACCATGATTTTGGCCTTACCGAGATT TTCCAATATATCCAAACAATTCAATGCAATTATTTCATAAACAGTGAGGAAAAGGTCTAAAGTATATACTCTCTGTCTTC AGGTGGCAAAGGAGAATAAGACTACTCTGCCTTCAGCTGCTCTGTTCATTATCAGATACCATTCATTCTATGGTAAGTCT AACTTAAAGAAGTAATTAATGTTCCCATGTTAATCATTTAATCATAAGCCTATAACATATCAAATGGTCCATTTTGCAAT TTGTTTGATATCATCATTTGTTTTGCAGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGATTTTGA GAATCTGGAATGGCTCCACATTTTCAAGTAACACCATTACATGATCTTCATATTTAGCAATTAAGTTTGCAAAATTTTGT TAAATTTTTTTCTAACTTCCTTCTACATTCACTCACTTGCAGCAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTG ATGTTGAAAAGGTCAAGCCATACTATCTCTCTCTCATTGAAAAGGTAAGCACTGCTAGAAAAATTTGTATTTCCTCTCCT TCTGAAAAAGAAATAAAAAAGTTGTTGTCTTTACCTAGTTAATTTTGAGCTTGTACTAATTAATGTATTTTTCTTTTCTG CAGTACTTTCCTGCAAAGCTAAAGTGGTGA
CDS sequence (LotjaGi3g1v0372900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGCTCAACATAAAAAAAGTGTCAATGCGGTCCAGTTATTCTTGCCCCTTCTTTAATCTTTGGGCTAGGCCCATCAA GGATTACAATGCTGAAAGTGAGAGGCAAGAAGGAGTGGAGAACTTCTACAGGAAAAATCACATTTATCAATCCGTTGATT TCGTGAAGAAAATGAGAGAGGAATATGGAAAACTGAACAGGGTGGAGATGAGCATGTGGGAATGTTGTGAGCTTCTTAAT GAAGTGGTGGATGAGAGTGACCCTGATTTGGATGAACCTCAGATTGAGCACTTGCTACAGACAGCTGAAGCTATAAGGAA GGACTACCCAAATGAAGATTGGCTTCATTTAACTGGCCTTATCCATGACCTTGGCAAGGTGCTTCTGCTCCCCGTTTTTG GAGGACTTCCTCAATGGGCTGTAGTAGGTGACACATTCCCAGTTGGTTGCAGATTTGATGAGTCCATTGTTCATCACAAG CATTTTAAGGAGAACCCAGACTACAACAACCCTGCATACAACACTAGATATGGGATGTACTCAGAGAAATGTGGACTTAA CAACGTGCTGATGTCATGGGGACATGATGACTACATGTATCTTGTGGCAAAGGAGAATAAGACTACTCTGCCTTCAGCTG CTCTGTTCATTATCAGATACCATTCATTCTATGCTTTACATAGGGAAGGAGCCTATAAGCACTTGATGAATGAAGAGGAT TTTGAGAATCTGGAATGGCTCCACATTTTCAACAAATACGACCTCTATAGCAAGAGCAAAGTTCGAATTGATGTTGAAAA GGTCAAGCCATACTATCTCTCTCTCATTGAAAAGTACTTTCCTGCAAAGCTAAAGTGGTGA
Protein sequence (LotjaGi3g1v0372900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWLNIKKVSMRSSYSCPFFNLWARPIKDYNAESERQEGVENFYRKNHIYQSVDFVKKMREEYGKLNRVEMSMWECCELLN EVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHDLGKVLLLPVFGGLPQWAVVGDTFPVGCRFDESIVHHK HFKENPDYNNPAYNTRYGMYSEKCGLNNVLMSWGHDDYMYLVAKENKTTLPSAALFIIRYHSFYALHREGAYKHLMNEED FENLEWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLKW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 9 | 286 | 278 | 3.8E-171 | – | |
PANTHER | 9 | 286 | 278 | 3.8E-171 | ||
SUPERFAMILY | 29 | 286 | 258 | 1.26E-117 | – | |
Pfam | 37 | 286 | 250 | 6.9E-126 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
Biological process | Inositol catabolic process | The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. | ||
Molecular function | Inositol oxygenase activity | Catalysis of the reaction: myo-inositol + O(2) = D-glucuronate + H(2)O + H(+). | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi3g1v0372900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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