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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0374300 |
| Transcript ID | LotjaGi3g1v0374300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MADS-box transcription factor; TAIR: AT2G45650.1 AGAMOUS-like 6; Swiss-Prot: sp|P29386|AGL6_ARATH Agamous-like MADS-box protein AGL6; TrEMBL-Plants: tr|I3RZS2|I3RZS2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0374300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76657281..76661561) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAACTTCCTTATTAATTCCCCTTGCCCTAAATTGCAGCAATTAAAATTTTGCAGCAAGCAGCAATAGCAATAGCCAA TAGGTAATAGCAATAGTACTAGTATATTTACTAAAATTAAATTGGGAAAAAGAGAATGAGATGAAAATAAGAATAACTTG GGTTTCCATTTTTTTGTAAAAGAAGATCAAGTGTGCCCCTTTCTGTGTTCATAGTCTATTTCTATATACTACCCTAACTC CCACTTCTCTGAAACAACCCATTATCTCACTCTCACACACAACTACTTATATCTCTCTCTCTCTCTACCCTTTTTCTTTT TAGCATTGCACTAAATCAGTATCCCACTCTCCTCTTCTATCCATCAAATTGCTATTAACTTTGAGTTACAAGACACAGAA AAAGAGAGTGAAAAGAGAGAGAAACTGATCAAATGGGTAGAGGTAGAGTTGAGCTGAAGAGGATAGAGAACAAAATCAAC CGCCAGGTTACTTTCTCCAAAAGGAGGAATGGTTTGCTCAAGAAAGCATGTGAGCTCTCAATTCTGTGTGATGCTGAGGT TGCTCTCATCATTTTCTCAAGCCGTGGGAAGCTCTATGAATTTGGAAGTGTTGGGTAAATATTGCAAATTATATATATAA AAACTCATCTTTTTGTTTTTGTTTTCTTTTTTTGGATGCCCATTTTTGTATGGTGTGCAAATCCCAATAGGTAGTAACAG TTTAGAATCCCTAGCTAGTTAAAAACATTGGGTTTTCTGATACCTCCTTCTTCTCTTGTTCTGTGCAATTCACTTTCTTC CTTGCATCAGCTTCTTTCACCAAAATGGTTACTCGCAGCCCTTTATCTGAATTTGTTATTTTTAAGATTTAACCACACAC ACACCTTTCCTCACTACTTTTTCACCCATTACCCCTTCCATTTCTTCTCTCTTCAAATTTTCCCTTGTTTTTCTCTTCTT TCCATATAACTTAACTATTTTCTTCTTCCTGATTTCATCTCTCTCTGAATTGCTAGTTCATTTTTCTTCAAATAGAGAAG ATGGATAGATAGATATGATGATGAGGGGTTTGGTTTTTCCAATCACAGATCGACACGTTTCATGGTCCTTTTCAGCCTGA TATCTCAATTTTGTGAGATAAAGGTTCAGCTTTAACATCACTGTACTGCAGATGGAGCAGTATATGTGTGCACAACTCTA TTTCTTCTTTTCTCAGAAACAAGAAAACAGAAAAGGAAGAAAGCAATCATATGAGATGAGATCATGTATGAGTGAGTGGA CGATGCAGTTTTGTATCATAGTGTAATTAAATGGTGTGTGTGTGTGATAAGGTAAAGTACATGTTCAGTTCACTCTCTTT GTACCGTTGTACAAGATCTAGGGCTTCCTCAACATCTTCCACTAAATTATAGGGCCAATATAAGAAACTTAAGGCCTTAA ACTTTTAGTACTCTAGCTACCTTCAATAATGCAGTTCTTGATATTGTCCACATCCCTTTTAATCGTTTGATCTTTTGGTT CTATCATTGTATCTTCTCAGAAAATGCTCTATCATCCCAAAAACAACTGTAGGCTGCATCTGGGTTTGGACTTTGCAATC AATCTGAGTATACTGCTTATCTTGTTGTCTTTTTCTCTTAGGTTTTCTAGATCAATTGTTTCTCTCTCTTTTCTCTCTAA TTGCATTTTTCATGTCTATAATAAATTTAATTATCCACCACTACATTTAGTTTATGAGAAATTATACTAAAACATAATAA TGCTTACAATCAATTTTGTCTTTATTTCTCTATTCTATCATATTCATTACATATCTCTCTACTTTTCTTTTTTGATTCTG ATTGTCTATTGGATGTCTGCATTATCCAGATGTATGCATATCATATTCCTTAGTGAAAATCTTTTTTTTTTTTTTTCACT TAGACTTTTCCTCTCTCTCTTCTTTTAATTGCACCAGTTAATTTGGATGTGTAATTATACGTTCTCTGCATGATGATGGT GAAAGGTTTTACCAATAATGGGTCGAAATTGAAAGCTTAAAACTTTTTTCTTGTTTTTGCTTGTTAGCCCTAGGTAATAG GTATATCTGAGTCCGGTACAGCCATGGACTATGGAAAATATGAAAAGGGGAAAAAGAGGACAATATAAAAAGACTAAATA TGTTTCACTCTTTGTTCTTTCCTTTATTTCTTCTAATTTTTAACCTGACGTTGCAATTTGTGTAGTTTTTTGTACATATA AATTCCACTGATTTGGAATGCCTTAATTTAGTGATCATTTCTCTTTCTCCTTAGCATATATTGAGAGCTCAAAGTGTGTC AAAGCTCATCACCTACACTTCATATTACATATTCCATATACTAGTAAAAAAATTATTTGACTAATACAAAGCGAGTATTC TTTATAATTCACAGCACTGCCAAAACTATTGACCGATACCAACGGTGCTCTTTTAATCCTCAAGATGAGCATGTTAATTG TGAAACTCAGGTATGTCTTCACCAATCTTATATTAATCTGTGCGATGCTCATGACTTCAATTGTGTTTGAATTTATTTAT TTATTTACATAGCCTGTTAATCAATGAATTTCTATTTTGGCAATTAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCA AAGTATGAGTCTCTTCAAAGGACTCAGAGGTATTGACTTAAACCCCTTAATTTCAAGTATACAATTTTTAATTCACCTTC ACTACTTATGACTATATATTATCTTGGTTCCAATACTCATTGCATATGTTAATCACAAACAGAAAAGAGTTAATCCAGTA ATTAACATAGGTTACAAAATCATATTCACCACTTCCAAAAAGTTATTTTCCAATATATAATGTCCTTTCAGGCATTTGCT TGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTGCAGAATCTTGAGAAGCAGCTTGAAGGAGCTCTGGCACAAGCTA GGCAAAGGAAGGTGAGCAGACATTCTAGCAGCTTTAACTTTATTAAAATTGTTATGAAGGAGAGGAAACAAATTTGTACA CATCATGCTCTTTATGTACTCTTTTAATACATAAGGGGCAAGAAAAAAAATCAGATAGAAATTATTTAAGCAAACAACTT GATTTAGGAAAAATGTTTTAACAAACTCATGCTTGAAATTTTATTTCAATTGCAGACAGAAATCATGATTGAACAAATGG AAGAGCTTCGCACAAGGGTAAGATATACACAATTTTTTTATATGGTGGACATGTTAAAAACTGGTACACATTACAAGTAA TATTGTCCTTATGTACTAAAATTAATTTACAGAGAAATTCTTTTAACTTGTTAATCATGTTTTTCTTAGTCTACGGTAGA CAAAATAACTTTTGAATATGAAAAAAACATCCCCTCAATTTTGGTGTTTTCTTCCATCTTGCAGGAACGTCATTTAGGAG ACCTCAATAAGCAACTTAAACTCAAGGTTTTGTTACTCCTCATACAATTTCAGTATAGCTAGGATACATCATATATATAC ACATGTTATCATTTATTTTTTCAAGTGATTAACTCATTCTAATATCTTATAATTAGTTATCTTTCTTGCAAAACTTCATT TTCAGCTTGAATCAGAGGGATATAATCCCAAAGTTATGGAAAACTTGTGGTCCTCTACTTCAGCTGCTGGAACCAGCAAC TTTCCCTTTCATCCTGCTCAATCCAACCCAATGGATTGCCAACCAGAACCCTTTCTGCAAATAGGGTACATGAAATTGTG CATTGAATTTTATGTCTAACTTGGTATATAAGAAAATCAAATTAACTTAATCATCAATTGTTTAATTTGAACAGGTACCA TCAATATGTTCAAGCTGAATCATCTAGTATTCCAAAGAACAGCATGACTTGTGAGACAAACTTCATGCACGGATGGATGC TTTGATTTGATCACTTAGTCATTAATAAATTAAATATATGACTTATTAATTGCCTCATTGTCTATATGCTTTTTAATTAG ATTTGTGTTTCAGCATATAAAATTAATGTATCTTTGTGACCACCACGGGAAGCTGCAGACTTGATTATATAGTGTTTCCT GTAACTGGATACACATAGATACTACTTTTTCTTACTGTATTTAATTTGAACAATATTGATCGTTATTTGAACTTTGAAGA TTGAACAGATTATGTATGTACAATCTCTCTACCTCTCGTGCGGAAAAACCTTTCTCTATGGTTGAAGGGGAAAGGAAGTG AATAAAATCAAAGGAATACAAACTTAGGCATGTTAAGGAAG
CDS sequence (LotjaGi3g1v0374300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAGGTAGAGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAGGTTACTTTCTCCAAAAGGAGGAATGG TTTGCTCAAGAAAGCATGTGAGCTCTCAATTCTGTGTGATGCTGAGGTTGCTCTCATCATTTTCTCAAGCCGTGGGAAGC TCTATGAATTTGGAAGTGTTGGCACTGCCAAAACTATTGACCGATACCAACGGTGCTCTTTTAATCCTCAAGATGAGCAT GTTAATTGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACTCAGAG GCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTGCAGAATCTTGAGAAGCAGCTTGAAGGAGCTCTGG CACAAGCTAGGCAAAGGAAGACAGAAATCATGATTGAACAAATGGAAGAGCTTCGCACAAGGGAACGTCATTTAGGAGAC CTCAATAAGCAACTTAAACTCAAGCTTGAATCAGAGGGATATAATCCCAAAGTTATGGAAAACTTGTGGTCCTCTACTTC AGCTGCTGGAACCAGCAACTTTCCCTTTCATCCTGCTCAATCCAACCCAATGGATTGCCAACCAGAACCCTTTCTGCAAA TAGGGTACCATCAATATGTTCAAGCTGAATCATCTAGTATTCCAAAGAACAGCATGACTTGTGAGACAAACTTCATGCAC GGATGGATGCTTTGA
Protein sequence (LotjaGi3g1v0374300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRGRVELKRIENKINRQVTFSKRRNGLLKKACELSILCDAEVALIIFSSRGKLYEFGSVGTAKTIDRYQRCSFNPQDEH VNCETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSVKELQNLEKQLEGALAQARQRKTEIMIEQMEELRTRERHLGD LNKQLKLKLESEGYNPKVMENLWSSTSAAGTSNFPFHPAQSNPMDCQPEPFLQIGYHQYVQAESSSIPKNSMTCETNFMH GWML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 61 | 61 | 32.506 | ||
| SMART | 1 | 60 | 60 | 1.4E-39 | ||
| SUPERFAMILY | 2 | 81 | 80 | 1.2E-32 | ||
| CDD | 2 | 73 | 72 | 2.02751E-45 | ||
| PANTHER | 2 | 198 | 197 | 5.9E-107 | – | |
| PANTHER | 2 | 198 | 197 | 5.9E-107 | – | |
| PRINTS | 3 | 23 | 21 | 1.7E-31 | ||
| ProSitePatterns | 3 | 57 | 55 | - | ||
| Pfam | 10 | 57 | 48 | 4.4E-26 | ||
| Gene3D | 13 | 107 | 95 | 7.7E-28 | ||
| PRINTS | 23 | 38 | 16 | 1.7E-31 | ||
| PRINTS | 38 | 59 | 22 | 1.7E-31 | ||
| Pfam | 84 | 169 | 86 | 3.0E-29 | ||
| ProSiteProfiles | 85 | 175 | 91 | 16.275 | ||
| Coils | 119 | 142 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA polymerase II regulatory region sequence-specific DNA binding | Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0374300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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