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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376100 |
| Transcript ID | LotjaGi3g1v0376100.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT4G25500.1 arginine/serine-rich splicing factor 35; Swiss-Prot: sp|P92965|RS40_ARATH Serine/arginine-rich splicing factor RS40; TrEMBL-Plants: tr|I3S483|I3S483_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0376100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76881423..76885674) extracted from Lotus japonicus Gifu genome v1.2.
CCCGAAGAGCCGGATGCTCGGATCTATTTTATTCATTTACACTCTCAAAATAGTTCAAGGTGAGTTTAGCAAAACGGTGC GTTTCGATTCGTAGGCTCACAGCTCATGCAAATATGAGGCAGTGTTAGGTGAGTGAGTGAGTGCATTCATCACTCTTCCT CTCGAATTTTGCAATTTGCCCCCAAATCGCCAACCTAGGGTTTCATCCCCACACCCTCCCTCTCTCCAACAAGGTACCGA TCCTTCAACAGAGCATCAGATCCGGCTCAGTTCCTTCTTCAGACGCCGGCGATCCTCCAATCGCCACCTTTGTTTCGTTC AATTCACTATTTTCGAGTCTCGAAGTTCATTTTTTCTTGCATTGCGGTGCAGGTCGATTGCAAAGGGATTTCGCAGTAGC TCTGACTCTTCGAAAATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTT CAGAAGATACGGGAAGGTCGAAAGAGTGGACATGAAGTCTGGTATGTTGTTCTTCATAATCTATTTTCATGATAAATTTA ATTTAATTTTTTACTTTTTGTGTAGTGTTTTTTAGCCCTTGAGTTTTGATAATAGTTTCAGCTAGTCAATTTCTTATTTT ACTGGGTAGTATTCTTTGCACTGTGCTGTGCTTTATAGATTGTAAGTTTGGTATATTGGGTGGCCAAAAAGTATTATGGC TGTGATCATTTGTGAGTTTGCTATGCTGTGCTGAATTTGCTGGATGGATTTCGTACTCGCATTGGATATTTCAGAGACAA TTTCTGTTGCGGGACGGACAGTAGATTAACAGATTCGTGACCAGCGTTTCATGATGGAAGCCCATTTTTTGTGGCAGTGT TTGAGGAATTTGAAGTCGAGATGAAAGTGTCCTCTTGTGTTGAGTCAAAATGGGGTTATAATAATGTTTGAGGAAAGGAA AATGTTATGTACAACCATTGGAAGCAATCATTTGCAAAGAACTCATTGACCCTTTTTTAATTTCAGTTTGGAGTTTGGAC ACATTACATACACAAAAACACACAGAGAATTGGAGAAGAGAAGGCGTAATATCCCACATGATTATGAAATTAATATTTCA AATTAGTCATTAACATGATATGCTCATTTGGCAGAGGACAAGGCAAATAATAAAATCCTTTTAGGCCTCGTTTGGAAGAG CTTATTTGAGCTTATCTGATAGCATGCTCATATGCCAGTGTTTGGGATGTTTTAGCTTATGAAAAAGAGCTTATGCTTAT ATATAACTTATTTTCGATTTACTCCAATAAATTTTTTAAAATAGCTTATGAATAAACACTTATGTCAAAAGCGCTTATGA CCATAAGCGCTTAATTAAGCTGTGTTTCCAAACGGGGCCTTACTTCTGTTTGCTCGGCTTTTCATGATAATGCACAGGAT GTAATGTACATGGGCTGATTTCCCTGTTAACCTTTTAAACGTTCTGTCTTAATCTTGAATTTAAATGGAGCATGCGTAAC AACCAGGAATTAAATGTTGTTTCCTGAACTTAACATCCAAGAACTGTTTCCTCAAATGTTTCGTAAAACGGGTCGAGATG ATGTTCTTTGACTAATGACTAGTTACTTTTCAATGGATGTACATTTTCCTTTCCCTGTGAAAGAAGAAAAGCTGTCATTA CGATATGAAACCCCATACTCAACAATTTCTTTGTGGCAGGATTACTTGGAAGTTGGAATGTCCATGCTCTTGGATGGATG TGCTTCCCTGCATTTCTTTTCTAGAATGTGCCCCAGATTCTCCTTCTTGTATTTTTCCAGAAGAAATAATATGATCCGTC CTTGCTCTGCCATTCTGCATTCCCTCAGCATTCATTCCTTTTTCATTCCTCATGACTTTTGCTCAGTGTTCAATTTCCGA CATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGTGTTGTGGTACTTCTATATAGTCTTATTTTGTGTT TTATGATGATTTTTTCTCTCATATCTGTAAAGATACGGCCTTCCTCTTTAAACCATCTTCGTAAAAGTAGTATTCAAATG TTTGAAACATTTTTGTGCTGTTTTATGTTTAACATTCTTGTTTCATAGGATTTGCTTTTGTCTACATGGAAGACGAACGT GATGCTGAATATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAA GGTAGATTGTAATTGTTAATTGCATTGAAACTTGATAAGACTTCAGACCATAGATTTAAATGTAAACGTGTTATGCTGCA TTGTTATGCACTTACTTCAAAGCTTGACACTTGGGGATCAAAGTATGGCATCTGGATCTTGATATAAATCATTTTGGGAA ACTTTCATTTTGTTTAATTTTGATATTAGTGTGTGGACTCGTTATTGTGTTGTAGCTGCTGTTTATGTTCAATGCTTATT ATAGAATATTAACATTATTCAGTTAATTCTGGGCGATTGTTCATATTTCATTGTTCAAATAATGTACATTATGATTTTCA GCAAGAACGTGACAGTAGAAGGTCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTA TAAATTTTGATCCTGTACATACCAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGG ATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGGTT GTACTCAGCTTCTCAATTGTAAACTAGTTTTTTGTTCCCCTTTCTTTTATCCTTTAGAAATGAAGTAGATTCCAATGCCT TAAATAAATTAGGTAGAGGTACATATGTTAATGGTTCATTAATTTGAATGTTGGATTGTTTTATATTTTTTATGTGCAGC AAGTTTATGGATCGTGTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAG AAGAGGTCGTGTTTCTCCTGATGGGAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGG ATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAA AATGGGAGATATGATAGGTTTGATCCAATTTAGCTGCGGTTTTTTTTTTTTATTTTTAAAATCTAGTGTCATATATATAT ATCTGACAATTTAACTGTTCACGCAGCCGGTCTCCACCACCCCGAGATAGGTCGCGATCCTGAGGAGTAGCTGATTATAA TTCTGTGAAATTATTGTTAGTAGTCTATGTTCATTTCATTCTGACTTGTTTTAGTCCATAGTTCAGCAACAAAGAAAACT CGAACTTGTTTATTGTATTTACTTTTATGTATGGTTAGAATTTTTTATGCTTAATGTGCTAAGAGATTATATATTTATAT TAGATGTTCTTATGTTACTCATCAAATTCTATGGTTTATAAGATTTTCAAAAATGATTTGTCTAATCTTACTTTACACCG ATGGTAAGCAAATTATCTTATGGTGTTTCTACTTTCTCTATATCTACGTTTAGCATATCACTCTACAGTGTAATTATTTA ACGTTTGACTTAGCTGTTATGGTGGTCATGTAGCTCTTGACATTTTTCTTTGATTTGATTCAACTCAACTGTGTCATGTG CATCGGGTTATGCTACGGAGGTAGCTATCGGTTGCAATGTGTTTGATCAACGAATTGTCTTATTTGCTTTTCAATCTTTT GATTTCAAGTAATTTCAATTTCTGTGGATCCTGCATTTATTAATTAGTGTAAAATCCATGTTATTTTTTTTGGTCGATAA AATCCATGTTCCCCAATTCAACCAAAAAAAATCTTATCCTACTCTAATCACGGTGTCACCTTGGATATCCCTTCAAATCT GAGATTTTCCTTGTCAGGGAATGCCCCTTTTTGATTAAGTCTGTCACTCGAGCCCCTCTTCGTCTTTAGGAGAAATTGCT TCAGTATTTTTAGCTTTATGGGCCTTGATGGTTGATTTTTGTGAAGATCGATGTTGTGTATCTTCTGTGTTTTCAGAAGT AAATGGAATAGATTTTGGTGGGGGTATGGGTCTGAATCTCTACATGCCCTTATTCATAACAACAGACATGGTTACGTGCG AAAAGAGTGAGA
CDS sequence (LotjaGi3g1v0376100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGATTTGC TTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGC GCCGGATTCGCGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCTGCTGATTCAAGAAAACCTGCATCGAATATG AAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTGTACATACCAGGACAAGGGATCTGGAGAGACACTTTGATCC CTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCTTGGAGGATGCCACTAGAG CTTTGGAGGCAACTAACCTGAGCAAGTTTATGGATCGTGTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGA AGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTCTCCTGATGGGAGATATGGTCGTGGAAGATCCCCGAGTCCATA TCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGT ATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGATAGGTCGCGATCCTGA
Protein sequence (LotjaGi3g1v0376100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTFAQCSISDMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSADSRKPASNM KPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVITVEYAIRDDDDR RDGQSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYDSRSPPPRDRSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 63 | 63 | 9.473 | ||
| Gene3D | 2 | 75 | 74 | 5.8E-9 | ||
| PANTHER | 19 | 226 | 208 | 2.3E-106 | – | |
| PANTHER | 19 | 226 | 208 | 2.3E-106 | – | |
| SUPERFAMILY | 23 | 155 | 133 | 2.43E-24 | ||
| Pfam | 24 | 51 | 28 | 5.3E-5 | ||
| MobiDBLite | 61 | 75 | 15 | - | – | |
| MobiDBLite | 61 | 80 | 20 | - | – | |
| Gene3D | 76 | 168 | 93 | 4.5E-20 | ||
| ProSiteProfiles | 84 | 155 | 72 | 15.119 | ||
| SMART | 85 | 151 | 67 | 1.3E-15 | ||
| Pfam | 86 | 148 | 63 | 1.9E-12 | ||
| MobiDBLite | 157 | 238 | 82 | - | – | |
| MobiDBLite | 157 | 176 | 20 | - | – | |
| MobiDBLite | 209 | 238 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0376100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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