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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0376100 |
Transcript ID | LotjaGi3g1v0376100.4 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Arginine/serine-rich-splicing factor; TAIR: AT4G25500.1 arginine/serine-rich splicing factor 35; Swiss-Prot: sp|P92965|RS40_ARATH Serine/arginine-rich splicing factor RS40; TrEMBL-Plants: tr|I3S483|I3S483_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0376100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76881838..76884765) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTTCAGAAGATACGGGAA GGTCGAAAGAGTGGACATGAAGTCTGGTATGTTGTTCTTCATAATCTATTTTCATGATAAATTTAATTTAATTTTTTACT TTTTGTGTAGTGTTTTTTAGCCCTTGAGTTTTGATAATAGTTTCAGCTAGTCAATTTCTTATTTTACTGGGTAGTATTCT TTGCACTGTGCTGTGCTTTATAGATTGTAAGTTTGGTATATTGGGTGGCCAAAAAGTATTATGGCTGTGATCATTTGTGA GTTTGCTATGCTGTGCTGAATTTGCTGGATGGATTTCGTACTCGCATTGGATATTTCAGAGACAATTTCTGTTGCGGGAC GGACAGTAGATTAACAGATTCGTGACCAGCGTTTCATGATGGAAGCCCATTTTTTGTGGCAGTGTTTGAGGAATTTGAAG TCGAGATGAAAGTGTCCTCTTGTGTTGAGTCAAAATGGGGTTATAATAATGTTTGAGGAAAGGAAAATGTTATGTACAAC CATTGGAAGCAATCATTTGCAAAGAACTCATTGACCCTTTTTTAATTTCAGTTTGGAGTTTGGACACATTACATACACAA AAACACACAGAGAATTGGAGAAGAGAAGGCGTAATATCCCACATGATTATGAAATTAATATTTCAAATTAGTCATTAACA TGATATGCTCATTTGGCAGAGGACAAGGCAAATAATAAAATCCTTTTAGGCCTCGTTTGGAAGAGCTTATTTGAGCTTAT CTGATAGCATGCTCATATGCCAGTGTTTGGGATGTTTTAGCTTATGAAAAAGAGCTTATGCTTATATATAACTTATTTTC GATTTACTCCAATAAATTTTTTAAAATAGCTTATGAATAAACACTTATGTCAAAAGCGCTTATGACCATAAGCGCTTAAT TAAGCTGTGTTTCCAAACGGGGCCTTACTTCTGTTTGCTCGGCTTTTCATGATAATGCACAGGATGTAATGTACATGGGC TGATTTCCCTGTTAACCTTTTAAACGTTCTGTCTTAATCTTGAATTTAAATGGAGCATGCGTAACAACCAGGAATTAAAT GTTGTTTCCTGAACTTAACATCCAAGAACTGTTTCCTCAAATGTTTCGTAAAACGGGTCGAGATGATGTTCTTTGACTAA TGACTAGTTACTTTTCAATGGATGTACATTTTCCTTTCCCTGTGAAAGAAGAAAAGCTGTCATTACGATATGAAACCCCA TACTCAACAATTTCTTTGTGGCAGGATTACTTGGAAGTTGGAATGTCCATGCTCTTGGATGGATGTGCTTCCCTGCATTT CTTTTCTAGAATGTGCCCCAGATTCTCCTTCTTGTATTTTTCCAGAAGAAATAATATGATCCGTCCTTGCTCTGCCATTC TGCATTCCCTCAGCATTCATTCCTTTTTCATTCCTCATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTTCAACATAG AAACCATGATGATTTCGCAACTGTGGCAGGTGTTGTGGTACTTCTATATAGTCTTATTTTGTGTTTTATGATGATTTTTT CTCTCATATCTGTAAAGATACGGCCTTCCTCTTTAAACCATCTTCGTAAAAGTAGTATTCAAATGTTTGAAACATTTTTG TGCTGTTTTATGTTTAACATTCTTGTTTCATAGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCA ATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAAGGTAGATTGTAATTG TTAATTGCATTGAAACTTGATAAGACTTCAGACCATAGATTTAAATGTAAACGTGTTATGCTGCATTGTTATGCACTTAC TTCAAAGCTTGACACTTGGGGATCAAAGTATGGCATCTGGATCTTGATATAAATCATTTTGGGAAACTTTCATTTTGTTT AATTTTGATATTAGTGTGTGGACTCGTTATTGTGTTGTAGCTGCTGTTTATGTTCAATGCTTATTATAGAATATTAACAT TATTCAGTTAATTCTGGGCGATTGTTCATATTTCATTGTTCAAATAATGTACATTATGATTTTCAGCAAGAACGTGACAG TAGAAGGTCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTG TACATACCAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTT GCTTTTATTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGGTTGTACTCAGCTTCTCA ATTGTAAACTAGTTTTTTGTTCCCCTTTCTTTTATCCTTTAGAAATGAAGTAGATTCCAATGCCTTAAATAAATTAGGTA GAGGTACATATGTTAATGGTTCATTAATTTGAATGTTGGATTGTTTTATATTTTTTATGTGCAGCAAGTTTATGGATCGT GTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTC TCCTGATGGGAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGAT CAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGAT AGGTTTGATCCAATTTAGCTGCGGTTTTTTTTTTTTATTTTTAAAATCTAGTGTCATATATATATATCTGACAATTTAAC TGTTCACGCAGCCGGTCTCCACCACCCCGAGATAGGTCGCGATCCTGA
CDS sequence (LotjaGi3g1v0376100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTTCAGAAGATACGGGAA GGTCGAAAGAGTGGACATGAAGTCTGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCAATCAGAA GACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGG TCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTGTACATAC CAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTTGCTTTTA TTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGCAAGTTTATGGATCGTGTTATCACA GTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTCTCCTGATGG GAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGATCAAATCCAG CTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGATAGGTTTGAT CCAATTTAG
Protein sequence (LotjaGi3g1v0376100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRR SADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVIT VEYAIRDDDDRRDGQSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYDRFD PI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 234 | 234 | 8.2E-131 | – | |
PANTHER | 1 | 234 | 234 | 8.2E-131 | – | |
Gene3D | 1 | 86 | 86 | 3.8E-21 | ||
ProSiteProfiles | 2 | 74 | 73 | 16.654 | ||
SMART | 3 | 70 | 68 | 9.6E-17 | ||
SUPERFAMILY | 4 | 85 | 82 | 2.17E-20 | ||
Pfam | 4 | 62 | 59 | 9.1E-15 | ||
MobiDBLite | 72 | 91 | 20 | - | – | |
MobiDBLite | 72 | 86 | 15 | - | – | |
SUPERFAMILY | 84 | 174 | 91 | 1.61E-20 | ||
Gene3D | 87 | 180 | 94 | 4.5E-20 | ||
ProSiteProfiles | 95 | 166 | 72 | 15.119 | ||
SMART | 96 | 162 | 67 | 1.3E-15 | ||
Pfam | 97 | 159 | 63 | 1.9E-12 | ||
MobiDBLite | 168 | 187 | 20 | - | – | |
MobiDBLite | 168 | 242 | 75 | - | – | |
MobiDBLite | 220 | 242 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0376100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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