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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376100 |
| Transcript ID | LotjaGi3g1v0376100.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich-splicing factor; TAIR: AT4G25500.1 arginine/serine-rich splicing factor 35; Swiss-Prot: sp|P92965|RS40_ARATH Serine/arginine-rich splicing factor RS40; TrEMBL-Plants: tr|I3S483|I3S483_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0376100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76881838..76884802) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTTCAGAAGATACGGGAA GGTCGAAAGAGTGGACATGAAGTCTGGTATGTTGTTCTTCATAATCTATTTTCATGATAAATTTAATTTAATTTTTTACT TTTTGTGTAGTGTTTTTTAGCCCTTGAGTTTTGATAATAGTTTCAGCTAGTCAATTTCTTATTTTACTGGGTAGTATTCT TTGCACTGTGCTGTGCTTTATAGATTGTAAGTTTGGTATATTGGGTGGCCAAAAAGTATTATGGCTGTGATCATTTGTGA GTTTGCTATGCTGTGCTGAATTTGCTGGATGGATTTCGTACTCGCATTGGATATTTCAGAGACAATTTCTGTTGCGGGAC GGACAGTAGATTAACAGATTCGTGACCAGCGTTTCATGATGGAAGCCCATTTTTTGTGGCAGTGTTTGAGGAATTTGAAG TCGAGATGAAAGTGTCCTCTTGTGTTGAGTCAAAATGGGGTTATAATAATGTTTGAGGAAAGGAAAATGTTATGTACAAC CATTGGAAGCAATCATTTGCAAAGAACTCATTGACCCTTTTTTAATTTCAGTTTGGAGTTTGGACACATTACATACACAA AAACACACAGAGAATTGGAGAAGAGAAGGCGTAATATCCCACATGATTATGAAATTAATATTTCAAATTAGTCATTAACA TGATATGCTCATTTGGCAGAGGACAAGGCAAATAATAAAATCCTTTTAGGCCTCGTTTGGAAGAGCTTATTTGAGCTTAT CTGATAGCATGCTCATATGCCAGTGTTTGGGATGTTTTAGCTTATGAAAAAGAGCTTATGCTTATATATAACTTATTTTC GATTTACTCCAATAAATTTTTTAAAATAGCTTATGAATAAACACTTATGTCAAAAGCGCTTATGACCATAAGCGCTTAAT TAAGCTGTGTTTCCAAACGGGGCCTTACTTCTGTTTGCTCGGCTTTTCATGATAATGCACAGGATGTAATGTACATGGGC TGATTTCCCTGTTAACCTTTTAAACGTTCTGTCTTAATCTTGAATTTAAATGGAGCATGCGTAACAACCAGGAATTAAAT GTTGTTTCCTGAACTTAACATCCAAGAACTGTTTCCTCAAATGTTTCGTAAAACGGGTCGAGATGATGTTCTTTGACTAA TGACTAGTTACTTTTCAATGGATGTACATTTTCCTTTCCCTGTGAAAGAAGAAAAGCTGTCATTACGATATGAAACCCCA TACTCAACAATTTCTTTGTGGCAGGATTACTTGGAAGTTGGAATGTCCATGCTCTTGGATGGATGTGCTTCCCTGCATTT CTTTTCTAGAATGTGCCCCAGATTCTCCTTCTTGTATTTTTCCAGAAGAAATAATATGATCCGTCCTTGCTCTGCCATTC TGCATTCCCTCAGCATTCATTCCTTTTTCATTCCTCATGACTTTTGCTCAGTGTTCAATTTCCGACATGTTTCAACATAG AAACCATGATGATTTCGCAACTGTGGCAGGTGTTGTGGTACTTCTATATAGTCTTATTTTGTGTTTTATGATGATTTTTT CTCTCATATCTGTAAAGATACGGCCTTCCTCTTTAAACCATCTTCGTAAAAGTAGTATTCAAATGTTTGAAACATTTTTG TGCTGTTTTATGTTTAACATTCTTGTTTCATAGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCA ATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAAGGTAGATTGTAATTG TTAATTGCATTGAAACTTGATAAGACTTCAGACCATAGATTTAAATGTAAACGTGTTATGCTGCATTGTTATGCACTTAC TTCAAAGCTTGACACTTGGGGATCAAAGTATGGCATCTGGATCTTGATATAAATCATTTTGGGAAACTTTCATTTTGTTT AATTTTGATATTAGTGTGTGGACTCGTTATTGTGTTGTAGCTGCTGTTTATGTTCAATGCTTATTATAGAATATTAACAT TATTCAGTTAATTCTGGGCGATTGTTCATATTTCATTGTTCAAATAATGTACATTATGATTTTCAGCAAGAACGTGACAG TAGAAGGTCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTG TACATACCAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTT GCTTTTATTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGGTTGTACTCAGCTTCTCA ATTGTAAACTAGTTTTTTGTTCCCCTTTCTTTTATCCTTTAGAAATGAAGTAGATTCCAATGCCTTAAATAAATTAGGTA GAGGTACATATGTTAATGGTTCATTAATTTGAATGTTGGATTGTTTTATATTTTTTATGTGCAGCAAGTTTATGGATCGT GTTATCACAGTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTC TCCTGATGGGAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGAT CAAATCCAGCTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGAT AGGTTTGATCCAATTTAGCTGCGGTTTTTTTTTTTTATTTTTAAAATCTAGTGTCATATATATATATCTGACAATTTAAC TGTTCACGCAGCCGGTCTCCACCACCCCGAGATAGGTCGCGATCCTGAGGAGTAGCTGATTATAATTCTGTGAAATTATT GTTAG
CDS sequence (LotjaGi3g1v0376100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCCTGTCTTTTGTGGAAACCTGGATTTCGATGCGCGACAATCTGATGTTGAGAGACTCTTCAGAAGATACGGGAA GGTCGAAAGAGTGGACATGAAGTCTGGATTTGCTTTTGTCTACATGGAAGACGAACGTGATGCTGAATATGCAATCAGAA GACTTGATAGAACAGAATTTGGTAGAAAGGGGCGCCGGATTCGCGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGG TCTGCTGATTCAAGAAAACCTGCATCGAATATGAAACCGTCCAAGACTTTGTTTATTATAAATTTTGATCCTGTACATAC CAGGACAAGGGATCTGGAGAGACACTTTGATCCCTATGGGAAAATATCAAATATAAGGATCAGAAGGAATTTTGCTTTTA TTCAGTATGAATCCTTGGAGGATGCCACTAGAGCTTTGGAGGCAACTAACCTGAGCAAGTTTATGGATCGTGTTATCACA GTAGAGTATGCTATAAGAGATGATGATGACAGAAGGGATGGACAAAGTCCTGATAGAAGAGGTCGTGTTTCTCCTGATGG GAGATATGGTCGTGGAAGATCCCCGAGTCCATATCGTAGAGGCAGGGGTAGCCCGGATTATGGTCATGGATCAAATCCAG CTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACGTGCTGAAAGCCCGCAAAATGGGAGATATGATAGCCGGTCT CCACCACCCCGAGATAGGTCGCGATCCTGA
Protein sequence (LotjaGi3g1v0376100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKPVFCGNLDFDARQSDVERLFRRYGKVERVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRR SADSRKPASNMKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNIRIRRNFAFIQYESLEDATRALEATNLSKFMDRVIT VEYAIRDDDDRRDGQSPDRRGRVSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPEPRGSPKYERAESPQNGRYDSRS PPPRDRSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 237 | 237 | 1.4E-130 | – | |
| Gene3D | 1 | 87 | 87 | 4.1E-21 | ||
| PANTHER | 1 | 237 | 237 | 1.4E-130 | – | |
| ProSiteProfiles | 2 | 74 | 73 | 16.654 | ||
| SMART | 3 | 70 | 68 | 9.6E-17 | ||
| SUPERFAMILY | 4 | 85 | 82 | 2.31E-20 | ||
| Pfam | 4 | 62 | 59 | 9.5E-15 | ||
| MobiDBLite | 72 | 86 | 15 | - | – | |
| MobiDBLite | 72 | 91 | 20 | - | – | |
| SUPERFAMILY | 84 | 174 | 91 | 1.75E-20 | ||
| Gene3D | 88 | 180 | 93 | 5.4E-20 | ||
| ProSiteProfiles | 95 | 166 | 72 | 15.119 | ||
| SMART | 96 | 162 | 67 | 1.3E-15 | ||
| Pfam | 97 | 159 | 63 | 2.1E-12 | ||
| MobiDBLite | 168 | 187 | 20 | - | – | |
| MobiDBLite | 168 | 249 | 82 | - | – | |
| MobiDBLite | 220 | 249 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0376100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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