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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0376400 |
| Transcript ID | LotjaGi3g1v0376400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2-A13; TAIR: AT3G61060.1 phloem protein 2-A13; Swiss-Prot: sp|Q9LEX0|P2A13_ARATH F-box protein PP2-A13; TrEMBL-Plants: tr|A0A151UCF1|A0A151UCF1_CAJCA F-box protein PP2-A13; Found in the gene: LotjaGi3g1v0376400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:76903170..76905921) extracted from Lotus japonicus Gifu genome v1.2.
GCTACACCCGTACGATGCGCCAAACAATTCGCTGTGTTATTCTTCTCACGCCGAACATGCAGGAGCTGCACACGCAAGAA CCTTGTCATCATATTTCTAATACATTGAGCCGAAACTTCCGATATTTCTAGTTAAACTAAAGAGTAAAATATTTTTCTTT AATATATATACTTTTTCATTAATTTTATCCTCAGAACTAAATTTATACAAATTAATTTTTTTAAAATTTTAAATATTCAA TTTTTTTCGTTCTTCAGAATTCTGATCCCAAGTCATATATATCTCTGAACAGAGTTCCTTATCGGATCTAGGGTTCACAA AATCCAATTTCTGCAACAGAGTTCCCAAAAATCTCAATTTGCCCCCTAATTCTCTTCAAATCCTCACGTTTTCTTACCCA ATTATCAAATTCAGGTCCAAACACAAAGTATCAAGACCAATTCAGATTCTGGGTGTGCGATAATCCAAGAAGAGCTTTGC AATTTTGGGGGAAATCAAAGTGGGTTGGTATTTGAATTGACAAATTCAGGTTGAAGTTCAAGTTTGGGGTTGAATTCTCA TTCTGATTACGTGAAATTTGAGAGTTCTGATATGGGTGCTAATTTTTCCTCTTATGATGGGGATTCTGCTGCTTTGGGAC CATGGCTTGGGGATATACCTGAGGGTTGTGTGGCATTGGCGTTTCGTGATGCTTCATTTGCAGATTTTATCTGGGAATCG AAGTTGCCTTTGAATTATAAGTTTATTGTAGAGAAAGCTTTGGGGGATGCTTCTGTTGCAGAATTGGGGAAGAGGGATGT TTATGCAGCACTCTGCAGGCCTAATTTGTTTGACAATGAAACCAAGGTGAGCAGCAATATTGGCTCCTTTTACTCATTCA ATCTCTTATGCACTTTAAGTGTTTGATGTTTTGTTTCTAAAACTGTTACTTTTGTGTAGGAAATTTGGCTAGATAAGAGG ACGGGTGGAGTTTGTTTGGCGATTTCTTCCAAAGCGTTGAGGATTACAGGGATAGATGATCGGAGATATTGGAATCACAT TGCGACTAAAGAGTCAAGGTGAGATTATTGTACAAGTGCAAGAAATCTTGTTACTCGTGCCAGTACTGGAAATGGTTTAC TCTTGGCTTTGTTATACACTTATACCTTGTTTTCATCTATCTTCATGCTTTGAGTTGCATCAGTTTTTTTTGCTGAACTT TTGTTTTTATGCGCTTTTCTTTATTAATTCCATGTAATTATAGACTCACTTTCTGGCATTTTTATCTATAAAGTTTGAAC ATTGGAGTATTCATGATTTTCTAACCCCTTTTTACTAAGCTTATGCAATACCAAATCTCAATACGCGAGTTGGAAGAATG TTTAACTTAACTTAGCTAGAGAACTTTTTGAACCCAAATGTATCTTTCCTTGTAAACTCAATTGCATCAACATTCTGATT TCATTTGAGTGGTTTTATTGATATACCTAGTCCAGTTTTCCTTTTGGATTCTATCATGTTTGGGAATTCTTCAATCAACA ATTGATTATAGAGGCAAAATCAATTTTGGGGAGAAGCATTAGCTTCTAGGTAGCACAATTGATTCTGGGAGCTGATCCAA ACATACTCTAGTCAGTTCTAAGTTTTGGTCACCTTTTCTTAGCAGACCTACTATTAGGCACTTCAGAATTCCATGACCCT ATTTTTTTTAAATATTTCTATTATGACATACTTTACATGGTTTATGGAAGTATAAGAACATGGAGGAACTTGATATATTA TGCATTTTTTGTTTGTTTGTGTGTGTGTGGGAATAGGTTCCATACAGTTGCATATCTTCAACAAATTTGGTGGCTTGAAG TGGAAGGAGATATTGATTTCCAATTTCCACATGGAACATACAGTGTGTTCTTCAGACTCTACCTTGGCAGGTCATCCAAG AAGCTGGGTCGTCGAGTTTGTAAGACTGAGCACATCCATGGTTGGGATATAAAACCTGTCAAATTTCAGCTTACGACTTC TGATGGCCAACATGCTGAATCCCATAGTCATTTGGATAATCCAGGGCACTGGGTCCTCTACCATGCAGGAAACTTTGTTT CTAAGAATTCAAATGATTTGATGAATATCAAATTTTCATTATCTCAAATCGATTGCACTCATACGAAAGGTGGTTTGTGT GTAGACTCTGTACTTATATGCAACAGTAATGCAAGAAAAGAGCTGTAAATTGTTTTTGTAGGTAGGAAAGTGTTACAGAG TTGGATTTTGCGATTTTGGATGTAGGGGAGTTTAATATAGGTCATAATTGAAAATATCTCCAAAAAATTGCTTCTTTTAG ATGTTTTGGTTCTCTAATAGGACAATGTTTTAGACTTTTAGTAGGCTGCACATATTTATTTTACCCCTTTTTTGGCCTGG AATGTATTTGTGACTCATGTATATCTCCTCTTTCATTGATGTTGGGAATTGATTGTTGTGTTTTCTCAGAATGAAACGAG TCATGTGTTCAAACTTCAGCTGGTATGCATGGGTAGTCTATGTAACAACACACTTTTTAGTTTTTGCACTGAATAATTAT GGAATATTGTATATTTGATAAAAGGATATATCTTGTGGAATATATCATATATCAGTAGTTTATTTGTTATGGCATACAAT TTGTGATGAATAAGGGGTATTATTATGCCAATTTGATTAACTTTGGGTTACAACTTTGGAAGTTTGCACTCTTTTAATTA TTGTTTTCATTAGTTGATGTTTGGAAACAGAG
CDS sequence (LotjaGi3g1v0376400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTAATTTTTCCTCTTATGATGGGGATTCTGCTGCTTTGGGACCATGGCTTGGGGATATACCTGAGGGTTGTGT GGCATTGGCGTTTCGTGATGCTTCATTTGCAGATTTTATCTGGGAATCGAAGTTGCCTTTGAATTATAAGTTTATTGTAG AGAAAGCTTTGGGGGATGCTTCTGTTGCAGAATTGGGGAAGAGGGATGTTTATGCAGCACTCTGCAGGCCTAATTTGTTT GACAATGAAACCAAGGAAATTTGGCTAGATAAGAGGACGGGTGGAGTTTGTTTGGCGATTTCTTCCAAAGCGTTGAGGAT TACAGGGATAGATGATCGGAGATATTGGAATCACATTGCGACTAAAGAGTCAAGGTTCCATACAGTTGCATATCTTCAAC AAATTTGGTGGCTTGAAGTGGAAGGAGATATTGATTTCCAATTTCCACATGGAACATACAGTGTGTTCTTCAGACTCTAC CTTGGCAGGTCATCCAAGAAGCTGGGTCGTCGAGTTTGTAAGACTGAGCACATCCATGGTTGGGATATAAAACCTGTCAA ATTTCAGCTTACGACTTCTGATGGCCAACATGCTGAATCCCATAGTCATTTGGATAATCCAGGGCACTGGGTCCTCTACC ATGCAGGAAACTTTGTTTCTAAGAATTCAAATGATTTGATGAATATCAAATTTTCATTATCTCAAATCGATTGCACTCAT ACGAAAGGTGGTTTGTGTGTAGACTCTGTACTTATATGCAACAGTAATGCAAGAAAAGAGCTGTAA
Protein sequence (LotjaGi3g1v0376400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGANFSSYDGDSAALGPWLGDIPEGCVALAFRDASFADFIWESKLPLNYKFIVEKALGDASVAELGKRDVYAALCRPNLF DNETKEIWLDKRTGGVCLAISSKALRITGIDDRRYWNHIATKESRFHTVAYLQQIWWLEVEGDIDFQFPHGTYSVFFRLY LGRSSKKLGRRVCKTEHIHGWDIKPVKFQLTTSDGQHAESHSHLDNPGHWVLYHAGNFVSKNSNDLMNIKFSLSQIDCTH TKGGLCVDSVLICNSNARKEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 259 | 259 | 1.7E-134 | – | |
| PANTHER | 1 | 259 | 259 | 1.7E-134 | – | |
| Pfam | 96 | 252 | 157 | 6.2E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0376400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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