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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0377200 |
Transcript ID | LotjaGi3g1v0377200.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | BON1-associated protein 2; TAIR: AT2G45760.1 BON association protein 2; Swiss-Prot: sp|Q58FX0|BAP2_ARATH BON1-associated protein 2; TrEMBL-Plants: tr|I3SZB1|I3SZB1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0377200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:77002546..77004595) extracted from Lotus japonicus Gifu genome v1.2.
GACACACGGTGCAATTGCTTGCCTTAACCAAACAACGTATCCAATGGTGTGCCGCGGAGTATATAAATACTAGGTCAAAG TCCCAATCACAAGTCAACACACATTTTGCAAATTCAATTACACTGAAACAACAAGCCATTTTCGCTCTTTCTTTCTTCCA CTGCTTCCCCTCACTTTCCAAACCAAAACTCATCGACTTATATAACTATGATCAAAGCACAACAACAATTCACAACAACC AGCAAATTAAACAAACCAACTTTTCACACAAAGTTAGATATATAGATTAGATATATACATACACATTCATTTTTGTGCAC TACATAACTTGATTAAATTTTCTGCTATGGGTATAAGCTCACGTACTCTAGAGATCACCGTTATATCTGGCGAAAACCTC CGCGTAACCGACGACGCCTACGTCGTCGTTCGGGGGGAGTCTCTTAACTGCTGCACCACGAGGACGGTGAAGGATAGCGG TGAAGGTGACAAAAACAACCGCAATTCGAGTTTGCTTTCGTGGAATGAGAAGTTCTTGCTGGACATGCCAGCGCATGCGA GGTCCATCACGTTTGAGGTGCAGTGCGGGAAGTTCAAAGGTGTTCGGCCGGTTGGGGTGGCAAGGATAGCGGTTTCGGAT TTTCTGGGCTGCGATGTGCCGGATAGTTGCTTGAGGGTGTTGAGCTATAGGCTGAGGGACTGGGAAGGGAAGCGGAATGG GGTGCTTCATTTTGCGGTGAGGGTGGTGGTGCCGGAGAGATCGTGTTCGATTTCTGCGGCGGAACAAATGAAGGAAATGG TGCCAAAGTGTGAAGGATGTCGGTGATCAATTCACTGGAATTCATGAACTTCAGGGGTGTGTTATGATATTTTCAATGCT AGAAAAATATAGCATTCATTTTTTTCTTCTTCACCTTATTGGAATTTATTAAAAAGTATTTACTTTTTTTTAAGACAAAA TGTATTCAATTCTAAGCATAAGGGTGCTTAAACCCAGAAGATAAGAATAAGAGTTACTTGTAAAACATAGTTAATTACAA GCACTATATATATAAATATATATAAAACCCAGTACAAGATGAGGCTTCAAATACACAAAGCCTTTTGGATACCCCCAGCC TAATCAAGCTCAAAGTACTTCTCATATTTCAATATTAACATCAAAGAAGCCGCAGCAGTAGGGAAATGAGATATGAAGCA ACTAAGTGTAAATGAGAATAGAAAATGGTTGTGGTTATATAATCACATATTTAGAAATATAAGCAGATTTCACTAAGTAA AGAACTTTAGAATCCGTCTGCCATTTAAGGAATTTCTTGTATAAGAATTGTTGCATTAAGGTAAAGTTGTAACTCTTTCA GCTATCTTTTCTCCCTATTAGAGCTAGGTAAGTGGGTCGAAGTTCGCTGGTCGGCCCACGAAACCGTAGGCTATAGCCCA GAAAATATAGGACCGTTTAATTGCAGGCCTACGCGAGGCGGGTTAGCACGGGTCGGGCCTACGAGGAGGATCAAAAAGGT AATAGAGGTCAAAGCCTGCGGATCGGCCTGCAAAACTGCAGACTAGGGGGCTAAGCCTGAAGAACAGAAGACCTCTTAAT TGCAGGCCTACACGGGGCGAGCGAGCCTGCGTACCTAGCTCTAAATCCTATCCACAAGGGTGTTCTCCAACTTAATTCCC ACTGCCCCATTTCATTAATTCTTTTCTTTTTCTGATTAGAGATGCAGAAAAGCCTTCTAAATATAGTGCTCAAAGCTTCA TTTCCAAGCCAGATATTCTCCCAGAATATAACTTTGTTCCCTTCTCATATTTTTCAGATTCGCCCCTGGGTCAAGAAGCA TTTATTTGGGGTCAAGAAGCATGTTTTCGGCAGTTCCGACTTCCAACCACGAATAAGAGGCTGATAAAGGTTTTTTTTCC CCATGATTGTACTGCTTTGAACTTAAACATTTATGATTCAATCGTAGATTCGTAGTAAAGCAAATACGAGTTTATCGTCC TCATAAATTATGTGATTATCAATTCCACTAGCTAAATATTAATTCGAGCG
CDS sequence (LotjaGi3g1v0377200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTATAAGCTCACGTACTCTAGAGATCACCGTTATATCTGGCGAAAACCTCCGCGTAACCGACGACGCCTACGTCGT CGTTCGGGGGGAGTCTCTTAACTGCTGCACCACGAGGACGGTGAAGGATAGCGGTGAAGGTGACAAAAACAACCGCAATT CGAGTTTGCTTTCGTGGAATGAGAAGTTCTTGCTGGACATGCCAGCGCATGCGAGGTCCATCACGTTTGAGGTGCAGTGC GGGAAGTTCAAAGGTGTTCGGCCGGTTGGGGTGGCAAGGATAGCGGTTTCGGATTTTCTGGGCTGCGATGTGCCGGATAG TTGCTTGAGGGTGTTGAGCTATAGGCTGAGGGACTGGGAAGGGAAGCGGAATGGGGTGCTTCATTTTGCGGTGAGGGTGG TGGTGCCGGAGAGATCGTGTTCGATTTCTGCGGCGGAACAAATGAAGGAAATGGTGCCAAAGTGTGAAGGATGTCGGTGA
Protein sequence (LotjaGi3g1v0377200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGISSRTLEITVISGENLRVTDDAYVVVRGESLNCCTTRTVKDSGEGDKNNRNSSLLSWNEKFLLDMPAHARSITFEVQC GKFKGVRPVGVARIAVSDFLGCDVPDSCLRVLSYRLRDWEGKRNGVLHFAVRVVVPERSCSISAAEQMKEMVPKCEGCR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 152 | 152 | 9.0E-72 | – | |
PANTHER | 1 | 152 | 152 | 9.0E-72 | – | |
Gene3D | 4 | 155 | 152 | 1.5E-6 | ||
SUPERFAMILY | 7 | 135 | 129 | 5.66E-9 | – | |
CDD | 7 | 129 | 123 | 6.67288E-31 | – | |
SMART | 7 | 108 | 102 | 3.4E-8 | ||
Pfam | 7 | 98 | 92 | 8.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0377200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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